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  1. Published

    Whole-genome sequence analysis unveils different origins of European and Asiatic mouflon and domestication-related genes in sheep

    Chen, Z., Xu, Y., Xie, X., Wang, D., Aguilar-Gómez, D., Liu, G., Li, X., Esmailizadeh, A., Rezaei, V., Kantanen, J., Ammosov, I., Nosrati, M., Periasamy, K., Coltman, D. W., Lenstra, J. A., Nielsen, Rasmus & Li, M., 2021, In: Communications Biology . 4, 15 p., 1307.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Detecting Selection in Multiple Populations by Modeling Ancestral Admixture Components

    Cheng, J. Y., Stern, A. J., Racimo, Fernando & Nielsen, Rasmus, 2022, In: Molecular Biology and Evolution. 39, 1, 14 p., msab294.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Conservative plumage masks extraordinary phylogenetic diversity in the Grallaria rufula (Rufous Antpitta) complex of the humid Andes

    Chesser, R. T., Isler, M. L., Cuervo, A. M., Cadena, C. D., Galen, S. C., Bergner, L. M., Fleischer, R. C., Bravo, G. A., Lane, D. F. & Hosner, Peter Andrew, 2020, In: Auk. 137, 3, 25 p., 009.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    The Coupled Influence of Thermal Physiology and Biotic Interactions on the Distribution and Density of Ant Species along an Elevational Gradient

    Chick, L. D., Lessard, J., Dunn, Rob & Sanders, N. J., 2020, In: Diversity. 12, 12, 16 p., 456.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    North and South: Exploring isotopic analysis of bone carbonates and collagen to understand post-medieval diets in London and northern England

    Chidimuro, B., Doherty, S., Finch, J., Ponce, P., Eggington, J., Delaney, S., Speller, C., Collins, Matthew James, Holst, M. & Alexander, M., 2023, In: American journal of biological anthropology. 182, 1, p. 126-142 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Grim up North? Exploring the diet of urban populations in post-medieval Greater Manchester, England, using stable isotope analysis

    Chidimuro, B., Holst, M., Newman, S., Keefe, K., Collins, Matthew James & Alexander, M., 2023, In: Archaeological and Anthropological Sciences. 15, 11, 19 p., 174.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Molecular diversity of dragonflies in three high-elevation Andean tropical lakes through DNA barcoding

    Chiriboga-Ortega, R., Van der Heyden, C., Sulen Burgos, M. E., Ortega, S., Ona, T., Velarde, E., Goethals, P. & Alfaro-Nunez, A., 2021, In: Biotropica. 53, 2, p. 354-358 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    The Importance of Incorporating Landscape Change for Predictions of Climate-Induced Plant Phenological Shifts

    Chisholm, C., Becker, M. S. & Pollard, W. H., 2020, In: Frontiers in Plant Science. 11, 13 p., 759.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Plots.jl – A User Extendable Plotting API for the Julia Programming Language

    Christ, S., Schwabeneder, D., Rackauckas, C., Borregaard, Michael Krabbe & Breloff, T., 2023, In: Journal of open research soft ware. 11, 1, 18 p., 5.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Impact of zooplankton grazing on phytoplankton in north temperate coastal lakes: changes along gradients in salinity and nutrients

    Christensen, I., Pedersen, L. K., Søndergaard, M., Lauridsen, T. L., Tserenpil, S., Richardson, Katherine, Amorim, C. A., Pacheco, J. P. & Jeppesen, E., 2023, In: Hydrobiologia. 850, 20, p. 4609-4626 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Changes in forest structure drive temperature preferences of boreal understorey plant communities

    Christiansen, D. M., Iversen, Lars Lønsmann, Ehrlén, J. & Hylander, K., 2022, In: Journal of Ecology. 110, 3, p. 631-643 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Exhumed hydrocarbon traps in East Greenland: A comment on Andrews et al. (2020)

    Christiansen, F. G., Bojesen-Koefoed, J. A., Piasecki, Stefan, Stemmerik, L. & Therkelsen, J., 2020, In: Basin Research. 32, 5, p. 1234-1238

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  13. Published

    Våd natur kan give væsentlig klimaeffekt – men på lang sigt

    Christiansen, Jesper Riis, Jepsen, Martin Rudbeck, Ambus, Per Lennart, Elberling, Bo, Mueller, Carsten W., Bruun, Sander, Busck, Anne Gravsholt, Jensen, Lars Stoumann, Bruun, Hans Henrik, Krøijer, Stine, Jessen, Nina Toudal, Jessen, Søren & Stisen, S., 25 May 2022, BIO (DM).

    Research output: Other contribution › Net publication - Internet publication › Communication

  14. Published

    Use of emerging complete organelle DNA reference database in the diet analysis of the herbivorous wood grouse, western capercaillies (Tetrao urogallus)

    Chua, Physilia, Boessenkool, S., Alsos, I. G., Ekrem, T., Crampton-Platt, A. & Bohmann, Kristine, 2019.

    Research output: Contribution to conference › Poster › Research

  15. Published

    A two-step metagenomics approach for the identification and mitochondrial DNA contig assembly of vertebrate prey from the blood meals of common vampire bats (Desmodus rotundus)

    Chua, Physilia, Carøe, C., Crampton-Platt, A., Reyes-Avila, C. S., Jones, G., Streicker, D. G. & Bohmann, Kristine, 2022, In: Metabarcoding and Metagenomics. 6, p. 75-87 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Metagenomics: A viable tool for reconstructing herbivore diet

    Chua, Physilia, Crampton-Platt, A., Lammers, Y., Alsos, I. G., Boessenkool, S. & Bohmann, Kristine, 2021, In: Molecular Ecology Resources. 21, 7, p. 2249-2263

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Towards the extended barcode concept: Generating DNA reference data through genome skimming of danish plants

    Chua, Physilia, Leerhøi, Frederik, Arfaoui, Emilia Marie Rolander, Margaryan, Ashot, Noer, Christina, Richter, S. R., Restrup, M. E., Bruun, Hans Henrik, Hartvig, Ida, Coissac, E., Boessenkool, S., Alsos, I. G. & Bohmann, Kristine, 2021, 38 p. (bioRxiv).

    Research output: Working paper › Preprint › Research

  18. Published

    Taking metagenomics under the wings

    Chua, Physilia & Rasmussen, Jacob Agerbo, 2022, In: Nature Reviews Microbiology. 20, 8, p. 447 1 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  19. Published

    Reconstructing the diet an of elusive wood grouse(western capercaillies) using metagenomics: Environmental DNA provides a non-invasive and simple means of biomonitoring

    Chua, Physilia, 12 Nov 2019. 3 p.

    Research output: Contribution to conference › Paper › Research

  20. Published

    Molecular dietary analyses of western capercaillies (Tetrao urogallus) reveal a diverse diet

    Chua, Physilia, Lammers, Y., Menoni, E., Ekrem, T., Bohmann, Kristine, Boessenkool, S. & Alsos, I. G., 2021, In: Environmental DNA. 3, 6, p. 1156-1171 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    A multifaceted approach towards investigating childbirth deaths in double burials: Anthropology, paleopathology and ancient DNA

    Cilli, E., Gabanini, G., Ciucani, M. M., De Fanti, S., Serventi, P., Bazaj, A., Sarno, S., Ferri, G., Fregnani, A., Cornaglia, G., Gruppioni, G., Luiselli, D. & Traversari, M., 2020, In: Journal of Archaeological Science. 122, 9 p., 105219.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Museomics Provides Insights into Conservation and Education: The Instance of an African Lion Specimen from the Museum of Zoology “Pietro Doderlein”

    Cilli, E., Fontani, F., Ciucani, M. M., Pizzuto, M., Di Benedetto, P., De Fanti, S., Mignani, T., Bini, C., Iacovera, R., Pelotti, S., Spadola, F., Luiselli, D. & Lo Brutto, S., 2023, In: Diversity. 15, 1, 12 p., 87.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    The extinct Sicilian wolf shows a complex history of isolation and admixture with ancient dogs

    Ciucani, M. M., Ramos-Madrigal, J., Hernández-Alonso, G., Carmagnini, A., Aninta, S. G., Sun, X., Scharff-Olsen, C. H., Lanigan, L. T., Fracasso, I., Clausen, C. G., Aspi, J., Kojola, I., Baltrūnaitė, L., Balčiauskas, L., Moore, J., Åkesson, M., Saarma, U., Hindrikson, M., Hulva, P., Bolfíková, B. Č. & 19 others, Nowak, C., Godinho, R., Smith, S., Paule, L., Nowak, S., Mysłajek, R. W., Lo Brutto, S., Ciucci, P., Boitani, L., Vernesi, C., Stenøien, H. K., Smith, O., Frantz, L., Rossi, L., Angelici, F. M., Cilli, E., Sinding, Mikkel Holger Strander, Gilbert, M Thomas P & Gopalakrishnan, Shyam, 2023, In: iScience. 26, 8, 22 p., 107307.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Evolutionary history of the extinct Sardinian dhole

    Ciucani, M. M., Jensen, J. K., Sinding, M. S., Smith, O., Lucenti, S. B., Rosengren, E., Rook, L., Tuveri, C., Arca, M., Cappellini, Enrico, Galaverni, M., Randi, E., Guo, C., KU, thw266, Sicheritz-Pontén, Thomas, Dalén, L., Gilbert, M Thomas P & Gopalakrishnan, Shyam, 2021, In: Current Biology. 31, 24, p. 5571-5579.e6 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Chasing Ghosts: Palaeogenomic studies of three extinct beasts

    Ciucani, M. M., 2022, GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen. 174 p.

    Research output: Book/Report › Ph.D. thesis › Research

  26. Published

    Old wild wolves: ancient DNA survey unveils population dynamics in Late Pleistocene and Holocene Italian remains

    Ciucani, M. M., Palumbo, D., Galaverni, M., Serventi, P., Fabbri, E., Ravegnini, G., Angelini, S., Maini, E., Persico, D., Caniglia, R. & Cilli, E., 2019, In: PeerJ. 7, e6424.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    The genomic history of the Aegean palatial civilizations

    Clemente, F., Unterlaender, M., Dolgova, O., Amorim, C. E. G., Coroado-Santos, F., Neuenschwander, S., Ganiatsou, E., Davalos, D. I. C., Anchieri, L., Michaud, F., Winkelbach, L., Bloecher, J., Cardenas, Y. O. A., da Mota, B. S., Kalliga, E., Souleles, A., Kontopoulos, I., Karamitrou-Mentessidi, G., Philaniotou, O., Sampson, A. & 17 others, Theodorou, D., Tsipopoulou, M., Akamatis, I., Halstead, P., Kotsakis, K., Urem-Kotsou, D., Panagiotopoulos, D., Ziota, C., Triantaphyllou, S., Delaneau, O., Jensen, J. D., Moreno Mayar, J. Víctor, Burger, J., Sousa, V. C., Lao, O., Malaspinas, A. & Papageorgopoulou, C., 2021, In: Cell. 184, 10, p. 2565-2586 43 p., 21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    The effects of seaward distance on above and below ground carbon stocks in estuarine mangrove ecosystems

    Cleyndert, G. D. J., Cuni-Sanchez, A., Seki, H. A., Shirima, D. D., Munishi, P. K. T., Burgess, Neil David, Calders, K. & Marchant, R., 2020, In: Carbon Balance and Management. 15, 1, 15 p., 27.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Lungs, Liposomes, Libraries, and Likely Interactions Between Phages and Eukaryotic Cells

    Clokie, M. & Sicheritz-Pontén, Thomas, 2023, In: PHAGE: Therapy, Applications, and Research. 4, 1, p. 1-2 2 p.

    Research output: Contribution to journal › Editorial › Research › peer-review

  30. Published

    Reflections on 2022: A Progressive Year for Phage Therapy

    Clokie, M. & Sicheritz-Pontén, Thomas, 2022, In: PHAGE: Therapy, Applications, and Research. 3, 4, p. 181-182 2 p.

    Research output: Contribution to journal › Editorial › Research › peer-review

  31. Published

    Phage Therapy: Insights from the Past, the Great Need of the Present, and Glimpses into the Future

    Clokie, M. R. J. & Sicheritz-Pontén, Thomas, 2022, In: PHAGE: Therapy, Applications, and Research. 3, 2, p. 65-66 2 p.

    Research output: Contribution to journal › Editorial › Research › peer-review

  32. Published

    Rethinking Phage Ecology by Rooting it Within an Established Plant Framework

    Clokie, M. R. J., Blasdel, B. G., Demars, B. O. L. & Sicheritz-Pontén, Thomas, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 3, p. 121-136

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Widespread shortfalls in protected area resourcing undermine efforts to conserve biodiversity

    Coad, L., Watson, J. E. M., Geldmann, Jonas, Burgess, Neil David, Leverington, F., Hockings, M., Knights, K. & Di Marco, M., 2019, In: Frontiers in Ecology and the Environment. 17, 5, p. 259-264

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Ancient DNA from a lost Negev Highlands desert grape reveals a Late Antiquity wine lineage

    Cohen, P., Bacilieri, R., Ramos Madrigal, Jazmin, Privman, E., Boaretto, E., Weber, A., Fuks, D., Weiss, E., Erickson-Gini, T., Bucking, S., Tepper, Y., Cvikel, D., Schmidt, J., Gilbert, M Thomas P, Wales, N., Bar-Oz, G. & Meiri, M., 2023, In: PNAS. 120, 17, 8 p., e2213563120.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    An appetite for pests: Synanthropic insectivorous bats exploit cotton pest irruptions and consume various deleterious arthropods

    Cohen, Y., Bar-David, S., Nielsen, M., Bohmann, Kristine & Korine, C., 2020, In: Molecular Ecology. 29, 6, p. 1185-1198 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Genomic insights into the secondary aquatic transition of penguins

    Cole, T. L., Zhou, C., Fang, M., Pan, H., Ksepka, D. T., Fiddaman, S. R., Emerling, C. A., Thomas, D. B., Bi, X., Fang, Q., Ellegaard, M. R., Feng, S., Smith, A. L., Heath, T. A., Tennyson, A. J. D., Borboroglu, P. G., Wood, J. R., Hadden, P. W., Grosser, S., Bost, C. A. & 20 others, Cherel, Y., Mattern, T., Hart, T., Sinding, Mikkel Holger Strander, Shepherd, L. D., Phillips, R. A., Quillfeldt, P., Masello, J. F., Bouzat, J. L., Ryan, P. G., Thompson, D. R., Ellenberg, U., Dann, P., Miller, G., Dee Boersma, P., Zhao, R., Gilbert, M Thomas P, Yang, H., Zhang, D. & KU, thw266, 2022, In: Nature Communications. 13, 13 p., 3912.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Greenland ice sheet mass balance assessed by PROMICE (1995–2015)

    Colgan, W., Mankoff, K., Kjeldsen, K. K., Bjørk, A. A., Box, J., Simonsen, S. B., Sørensen, L., Khan, S. A., Solgaard, A. M., Forsberg, R., Skourup, H., Stenseng, L., Kristensen, S., Hvidegaard, S. M., Citterio, M., Karlsson, N. B., Fettweis, X., Ahlstrøm, A. P., Andersen, S., Van As, D. & 1 others, Fausto, R., 2019, In: Geological Survey of Denmark and Greenland (GEUS) Bulletin. 43, 6 p., e2019430201.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Bone as an indicator in the in situ degradation of archaeological heritage. Two examples: Apigliano, Italy, and Aartswould, the Netherlands

    Collins, Matthew James, Kars, H., Jans, M., Kars, E., Nord, A. & Arther, P., 2004, Preserving archaeological remains in situ?: proceedings of the 2nd conference, 12-14 September 2001.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  39. Published

    Exceptional preservation of bison bones older than 55 ka as demonstrated by protein and DNA sequences

    Collins, Matthew James, Nielsen-Marsh, C. M., Ostrom, P., Gandhi, H. & Hauschka, P. V., 2002, In: Geology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Medway valley Palaeolithic project: amino acid racemization analysis

    Collins, Matthew James, McGrory, S. & Penkman, K., 2007, In: Research Department Report Series 73/2007.

    Research output: Contribution to journal › Journal article › Research

  41. Published

    Simulated partitioning of polyaromatic hydrocarbons between mineral surfaces and humic layers in the water phase.

    Collins, Matthew James, van Duin, A. C. T., Jones, M. & Graham, M., 2000, ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  42. Published

    Mitochondrial DNA variation in ancient European cattle: tracing the introduction routes of domestic cattle

    Collins, Matthew James, Elburg, R., Ortega, A. I., Bouwman, A. & Carretero, J., 2006, In: Academia.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Further evidence for mummification in Bronze Age Britain

    Collins, Matthew James, Pearson, P., Chamberlain, A., Willis, C., Craig, G., Craig, O. E., Hiller, J. C., Marshall, P., Mulville, J. & Smith, H., 2007, In: Antiquity.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Bone Diagenesis: implications for heritage management

    Collins, Matthew James, Nielsen-Marsh, C. M., Hiller, J. C., Smith, C., Robert, S., Prigodich, R. V., Wess, T. J., Csapó, J., Millard, A. R. & Turner-Walker, G., 2004, The Future from the Past.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  45. Published

    Preservation of skeletal remains in European Pleistocene caves: changes to the protein and mineral components of fossil bone.

    Collins, Matthew James, Hiller, J. C., Wess, T. J. & Chamberlain, A. T., 2001, In: American Journal of Physical Anthropology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Palaeolithic Archaeology of the Sussex/Hampshire Coastal Corridor: Amino Acid Racemization Analysis

    Collins, Matthew James, 2004

    Research output: Book/Report › Book › Research

  47. Published

    Characterisation and cycling of dissolved organic matter in the ocean and in the NW Mediterranean Sea

    Collins, Matthew James, Jones, V., Gogou, A., Migon, C., Penkman, K. E. H. & Repteta, D., 2006, In: CIESM Workshop Monographs.

    Research output: Contribution to journal › Journal article › Research

  48. Published

    Rekonstruktion der Ernährungsweise in den mittel-und frühneolithischen Bevölkerungen von Trebur/Hessen und Herxheim/Pfalz anhand der Analyse stabiler Isotope

    Collins, Matthew James, Dürrwächter, C., Craig, O. E., Taylor, G., Burger, J. & Alt, K. W., 2003, In: Bull. Soc. Suisse d’Anthrop..

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    The chemical degradation of bone

    Collins, Matthew James, Nielsen-Marsh, C. M., Gernaey, A. M., Turner-Walker, G., Hedges, R. E. M. & Pike, A. G., 2000, In: Human osteology in archaeology and forensic science. London: Greenwich Medical Media.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    British Aggregates: An Improved Chronology Using Amino Acid Racemization and Degradation of Intracrystalline Amino Acids (IcPD): Scientific Dating Report

    Collins, Matthew James, 2008

    Research output: Book/Report › Book › Research › peer-review

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