Thomas Sicheritz-Pontén

Thomas Sicheritz-Pontén

Professor

  • Section for Evolutionary Genomics

    Øster Farimagsgade 5, 1353 København K

    Mobile: +46 70 65 72 471

Publication year:
  1. 2020
  2. Published

    A draft genome sequence of the elusive giant squid, Architeuthis dux

    Rodrigues da Fonseca, Rute Andreia, Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, Â. M., Barrio-Hernandez, I., Hoving, H., Tafur-Jimenez, R., Chu, C., Frazão, B., Petersen, Bent, Peñaloza, F., Musacchia, F., Alexander, G. C., Osório, H., Winkelmann, I., Simakov, O., Rasmussen, Simon, Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., Zhang, Guojie, Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Pontén, Thomas, Nielsen, Rasmus & Gilbert, M Thomas P, 2020, In : GigaScience. 9, 1, 12 p., giz152.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Arctic-adapted dogs emerged at the Pleistocene-Holocene transition

    Sinding, Mikkel Holger Strander, Gopalakrishnan, Shyam, Ramos Madrigal, Jazmin, de Manuel, M., Pitulko, V. V., Kuderna, L., Feuerborn, Tatiana Richtman, Frantz, L. A. F., Vieira, Filipe Garrett, Niemann, Jonas, Samaniego Castruita, J. A., Carøe, Christian, Andersen-Ranberg, Emilie Ulrikka, Jordan, P. D., Pavlova, E. Y., Nikolskiy, P. A., Kasparov, A. K., Ivanova, V. V., Willerslev, Eske, Skoglund, P., Fredholm, Merete, Wennerberg, S. E., Heide-Jørgensen, M. P., Dietz, R., Sonne, C., Meldgaard, Morten, Dalén, L., Larson, G., Petersen, Bent, Sicheritz-Pontén, Thomas, Bachmann, L., Wiig, Ø., Marques-Bonet, T., Hansen, Anders Johannes & Gilbert, M Thomas P, 2020, In : Science (New York, N.Y.). 368, 6498, p. 1495-1499 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Dense sampling of bird diversity increases power of comparative genomics

    Feng, S., Stiller, Josefin, DENG, Yuan, Armstrong, J., Fang, Qi, Hart Reeve, Andrew, Xie, D., Chen, G., Guo, C., Faircloth, B. C., Petersen, Bent, Wang, Z., Zhou, Q., Diekhans, M., Chen, W., Andreu-Sánchez, S., Margaryan, Ashot, Howard, J. T., Parent, C., Antunes Pacheco, George, Sinding, Mikkel Holger Strander, Puetz, Lara Christine, Cavill, Emily Louisa, Ribeiro, Â. M., Eckhart, L., Fjeldså, Jon, Hosner, Peter Andrew, Brumfield, R. T., Christidis, L., Bertelsen, Mads Frost, Sicheritz-Pontén, Thomas, Tietze, D. T., Robertson, B. C., Song, G., Borgia, G., Claramunt, S., Lovette, I. J., Cowen, S. J., Njoroge, P., Dumbacher, J. P., Ryder, O. A., Fuchs, J., Bunce, M., Burt, D. W., Cracraft, J., Meng, G., Hackett, S. J., Ryan, P. G., Jønsson, Knud Andreas, Jamieson, I. G., Rodrigues da Fonseca, Rute Andreia, Braun, E. L., Houde, P., Mirarab, S., Suh, A., Hansson, B., Ponnikas, S., Sigeman, H., Stervander, M., Frandsen, P. B., van der Zwan, H., van der Sluis, R., Visser, C., Balakrishnan, C. N., Clark, A. G., Fitzpatrick, J. W., Bowman, R., Chen, N., Cloutier, A., Sackton, T. B., Edwards, S. V., Foote, D. J., Shakya, S. B., Sheldon, F. H., Vignal, A., Soares, A. E. R., Shapiro, B., González-Solís, J., Ferrer-Obiol, J., Rozas, J., Riutort, M., Tigano, A., Friesen, V., Dalén, L., Urrutia, A. O., Székely, T., Liu, Y., Campana, M. G., Corvelo, A., Fleischer, R. C., Rutherford, K. M., Gemmell, N. J., Dussex, N., Mouritsen, H., Thiele, N., Delmore, K., Liedvogel, M., Franke, A., Hoeppner, M. P., Krone, O., Fudickar, A. M., Milá, B., Ketterson, E. D., Fidler, A. E., Friis, G., Parody-Merino, Á. M., Battley, P. F., Cox, M. P., Lima, N. C. B., Prosdocimi, F., Parchman, T. L., Schlinger, B. A., Loiselle, B. A., Blake, J. G., Lim, H. C., Day, L. B., Fuxjager, M. J., Baldwin, M. W., Braun, M. J., Wirthlin, M., Dikow, R. B., Ryder, T. B., Camenisch, G., Keller, L. F., Dacosta, J. M., Hauber, M. E., Louder, M. I. M., Witt, C. C., McGuire, J. A., Mudge, J., Megna, L. C., Carling, M. D., Wang, B., Taylor, S. A., Del-Rio, G., Aleixo, A., Vasconcelos, A. T. R., Mello, C. V., Weir, J. T., Haussler, D., Li, Q., Yang, H., Wang, J., Lei, F., Rahbek, Carsten, Gilbert, M Thomas P, Graves, G. R., Jarvis, E. D., Paten, B. & Zhang, Guojie, 2020, In : Nature. 587, 7833, p. 252-257

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Distinct life histories impact dikaryotic genome evolution in the rust fungus Puccinia striiformis causing stripe rust in wheat

    Chen, Y., Schwessinger, B., Tien, R., Vogt, Josef Korbinian, Sperschneider, J., Nagar, R., McMullan, M., Sicheritz-Pontén, Thomas, Sørensen, C. K., Hovmøller, M. S., Rathjen, J. P. & Justesen, A. F., 2020, In : Genome Biology and Evolution. 12, 5, p. 597-617

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Microbiota in foods from Inuit traditional hunting

    Hauptmann, A. L., Paulová, P., Hansen, Lars Hestbjerg, Sicheritz-Pontén, Thomas, Mulvad, G. & Nielsen, Dennis Sandris, 2020, In : PLoS ONE. 15, 1, 15 p., e0227819.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Multi-omic detection of Mycobacterium leprae in archaeological human dental calculus

    Fotaki, Anna Katerina, Denham, S. D., Mackie, Meaghan, Iraeta Orbegozo, Miren, Mylopotamitaki, D., Gopalakrishnan, Shyam, Sicheritz-Pontén, Thomas, Olsen, Jesper Velgaard, Cappellini, Enrico, Zhang, Guojie, Christophersen, A., Gilbert, M Thomas P & Vågene, Åshild Joanne, 2020, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 375, 1812, 10 p., 20190584.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    The evolutionary history of extinct and living lions

    de Manuel, M., Barnett, R., Sandoval-Velasco, Marcela, Yamaguchi, N., Vieira, Filipe Garrett, Mendoza, M. L. Z., Liu, S., Martin, M. D., Sinding, M. S., Mak, Sarah Siu Tze, Carøe, Christian, Liu, S., Guo, C., Zheng, J., Zazula, G., Baryshnikov, G., Eizirik, E., Koepfli, K., Johnson, W. E., Antunes, A., Sicheritz-Pontén, Thomas, Gopalakrishnan, Shyam, Larson, G., Yang, H., O'Brien, S. J., Hansen, Anders Johannes, Zhang, Guojie, Marques-Bonet, T. & Gilbert, M Thomas P, 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 20, p. 10927-10934 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    The microbial composition of dried fish prepared according to Greenlandic Inuit traditions and industrial counterparts

    Hauptmann, A. L., Paulová, P., Castro Mejia, Josue Leonardo, Hansen, L. H., Sicheritz-Pontén, Thomas, Mulvad, G. & Nielsen, Dennis Sandris, 2020, In : Food Microbiology. 85, 11 p., 103305.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. 2019
  11. Published

    High-Throughput Sequencing-Based Investigation of Viruses in Human Cancers by Multienrichment Approach

    Mollerup, S., Asplund, M., Friis-Nielsen, J., Kjartansdóttir, K. R., Fridholm, H., Hansen, T. A., Romero Herrera, Jose Alejandro, Barnes, Christopher James, Jensen, R. H., Richter, S. R., Nielsen, Ida Broman, Pietroni, C., Alquezar-Planas, D. E., Rey de la Iglesia, Alba, Olsen, Pernille Vibeke Selmer, Rajpert-De Meyts, E., Groth-Pedersen, L., von Buchwald, Christian, Jensen, D. H., Gniadecki, R., Høgdall, Estrid Vilma Solyom, Langhoff, J. L., Pete, I., Vereczkey, I., Baranyai, Z., Dybkaer, K., Johnsen, H. E., Steiniche, T., Hokland, P., Rosenberg, Jacob, Baandrup, U., Sicheritz-Pontén, Thomas, Willerslev, Eske, Brunak, Søren, Lund, O., Mourier, T., Vinner, Lasse, Izarzugaza, J. M. G., Nielsen, L. P. & Hansen, Anders Johannes, 15 Oct 2019, In : The Journal of Infectious Diseases. 220, 8, p. 1312-1324

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Contaminating viral sequences in high-throughput sequencing viromics: a linkage study of 700 sequencing libraries

    Asplund, M., Kjartansdóttir, K. R., Mollerup, S., Vinner, Lasse, Fridholm, H., Romero Herrera, Jose Alejandro, Friis-Nielsen, J., Hansen, T. A., Jensen, R. H., Nielsen, Ida Broman, Richter, S. R., Rey de la Iglesia, Alba, Matey-Hernandez, M. L., Alquezar-Planas, D. E., Olsen, Pernille Vibeke Selmer, Sicheritz-Pontén, Thomas, Willerslev, Eske, Lund, O., Brunak, Søren, Mourier, T., Nielsen, L. P., Izarzugaza, J. M. G. & Hansen, Anders Johannes, 2019, In : Clinical Microbiology and Infection. 25, 10, p. 1277-1285

    Research output: Contribution to journalJournal articleResearchpeer-review

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ID: 202359275