Thorfinn Sand Korneliussen

Thorfinn Sand Korneliussen

Associate Professor


  1. 2024
  2. Published

    100 ancient genomes show repeated population turnovers in Neolithic Denmark

    Allentoft, M. E., Sikora, M., Fischer, A., Sjögren, K-G., Ingason, A., Macleod, R., Rosengren, A., Schulz Paulsson, B., Jørkov, M. L. S., Novosolov, M., Stenderup, J., Price, T. D., Mortensen, M. F., Nielsen, A. B., Hede, M. U., Sørensen, L., Nielsen, P. O., Rasmussen, P., Jensen, T. Z. T., Refoyo-Martínez, A. & 48 others, Irving-Pease, Evan, Barrie, William, Pearson, A., Sousa da Mota, B., Demeter, Fabrice, Henriksen, Rasmus Henrik Amund, Vimala, Tharsika, McColl, Hugh, Vaughn, Andrew Howland, Vinner, Lasse, Renaud, Gabriel, Stern, A., Johannsen, N. N., Ramsøe, Abigail Daisy, Schork, A. J., Ruter, Anthony Henry, Gotfredsen, Anne Birgitte, Nielsen, B. H., Petersen, Erik Brinch, Kannegaard, E., Hansen, J., Pedersen, K. B., Pedersen, L., Klassen, L., Meldgaard, Morten, Johansen, M., Uldum, O. C., Lotz, P., Lysdahl, P., Bangsgaard, Pernille, Petersen, P. V., Maring, R., Iversen, Rune, Wåhlin, S., Sørensen, S. A., Andersen, S. H., Jørgensen, T., Lynnerup, Niels, Lawson, D. J., Rasmussen, Simon, Korneliussen, Thorfinn Sand, Kjær, Kurt H., Durbin, R., Nielsen, Rasmus, Delaneau, O., Werge, Thomas, Kristiansen, Kristian & Willerslev, Eske, 2024, In: Nature. 625, 7994, p. 329-337 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Elevated genetic risk for multiple sclerosis emerged in steppe pastoralist populations

    Barrie, W., Yang, Y., Irving-Pease, E. K., Attfield, K. E., Scorrano, G., Jensen, L. T., Armen, A. P., Dimopoulos, E. A., Stern, A., Refoyo-Martinez, A., Pearson, A., Ramsøe, A., Gaunitz, C., Demeter, F., Jørkov, M. L. S., Møller, S. B., Springborg, B., Klassen, L., Hyldgård, I. M., Wickmann, N. & 11 others, Vinner, Lasse, Korneliussen, Thorfinn Sand, Allentoft, Morten Erik, Sikora, Martin, Kristiansen, Kristian, Rodriguez, S., Nielsen, Rasmus, Iversen, A. K. N., Lawson, D. J., Fugger, Lars & Willerslev, Eske, 2024, In: Nature. 625, 7994, p. 321-328

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Population genomics of post-glacial western Eurasia

    Allentoft, M. E., Sikora, M., Refoyo-Martínez, A., Irving-Pease, E. K., Fischer, A., Barrie, W., Ingason, A., Stenderup, J., Sjögren, K-G., Pearson, A., da Mota, B. S., Paulsson, B. S., Halgren, A., Macleod, R., Jørkov, M. L. S., Demeter, F., Sørensen, L., Nielsen, P. O., Henriksen, R. A., Vimala, T. & 144 others, McColl, Hugh, Margaryan, Ashot, Ilardo, M., Vaughn, Andrew Howland, Mortensen, M. F., Nielsen, A. B., Hede, M. U., Johannsen, N. N., Rasmussen, P., Vinner, Lasse, Renaud, Gabriel, Stern, A., Jensen, Theis Zetner Trolle, Scorrano, Gabriele, Schroeder, Hannes, Lysdahl, P., Ramsøe, Abigail Daisy, Skorobogatov, A., Schork, A. J., Rosengren, A., Ruter, Anthony Henry, Outram, A., Timoshenko, A. A., Buzhilova, A., Coppa, A., Zubova, A., Silva, A. M., Hansen, Anders Johannes, Gromov, A., Logvin, A., Gotfredsen, Anne Birgitte, Nielsen, B. H., González-Rabanal, B., Lalueza-Fox, C., McKenzie, C. J., Gaunitz, Charleen, Blasco, C., Liesau, C., Martinez-Labarga, C., Pozdnyakov, D. V., Cuenca-Solana, D., Lordkipanidze, D. O., En’shin, D., Salazar-García, D. C., Price, T. D., Borić, D., Kostyleva, E., Veselovskaya, E. V., Usmanova, E. R., Cappellini, Enrico, Petersen, Erik Brinch, Kannegaard, E., Radina, F., Yediay, Fulya Eylem, Duday, H., Gutiérrez-Zugasti, I., Merts, I., Potekhina, I., Shevnina, I., Altinkaya, Isin, Guilaine, J., Hansen, J., Tortosa, J. E. A., Zilhão, J., Vega, J., Pedersen, K. B., Tunia, K., Zhao, Lei, Mylnikova, L. N., Larsson, L., Metz, L., Yepiskoposyan, L., Pedersen, L., Sarti, L., Orlando, L., Slimak, L., Klassen, L., Blank, M., González-Morales, M., Silvestrini, M., Vretemark, M., Nesterova, M. S., Rykun, M., Rolfo, M. F., Szmyt, M., Przybyła, M., Calattini, M., Sablin, M., Dobisíková, M., Meldgaard, Morten, Johansen, M., Berezina, N., Card, N., Saveliev, N. A., Poshekhonova, O., Rickards, O., Lozovskaya, O. V., Gábor, O., Uldum, O. C., Aurino, P., Kosintsev, P., Courtaud, P., Ríos, P., Mortensen, P., Lotz, P., Persson, P., Bangsgaard, Pernille, de Barros Damgaard, P., Vang Petersen, P., Martinez, P. P., Włodarczak, P., Smolyaninov, R. V., Maring, R., Menduiña, R., Badalyan, R., Iversen, Rune, Turin, R., Vasilyev, S., Wåhlin, S., Borutskaya, S., Skochina, S., Sørensen, S. A., Andersen, S. H., Jørgensen, T., Serikov, Y. B., Molodin, V. I., Smrcka, V., Merts, V., Appadurai, V., Moiseyev, V., Magnusson, Y., Kjær, Kurt H., Lynnerup, Niels, Lawson, D. J., Sudmant, P. H., Rasmussen, Simon, Korneliussen, Thorfinn Sand, Durbin, R., Nielsen, Rasmus, Delaneau, O., Werge, Thomas, Racimo, Fernando, Kristiansen, Kristian & Willerslev, Eske, 2024, In: Nature. 625, 7994, p. 301-311

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. 2023
  6. Published

    NGSNGS: next-generation simulator for next-generation sequencing data

    Henriksen, Rasmus Henrik Amund, Zhao, Lei & Korneliussen, Thorfinn Sand, 2023, In: Bioinformatics. 39, 1, 2 p., btad041.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    The transcriptional and regulatory identity of erythropoietin producing cells

    Kragesteen, B. K., Giladi, A., David, E., Halevi, S., Geirsdóttir, L., Lempke, O. M., Li, B., Bapst, A. M., Xie, K., Katzenelenbogen, Y., Dahl, S. L., Sheban, F., Gurevich-Shapiro, A., Zada, M., Phan, T. S., Avellino, R., Wang, S-Y., Barboy, O., Shlomi-Loubaton, S., Winning, S. & 15 others, Markwerth, P. P., Dekalo, S., Keren-Shaul, H., Kedmi, M., Sikora, Martin, Fandrey, J., Korneliussen, Thorfinn Sand, Prchal, J. T., Rosenzweig, B., Yutkin, V., Racimo, Fernando, Willerslev, Eske, Gur, C., Wenger, R. H. & Amit, I., 2023, In: Nature Medicine. 29, 5, p. 1191-1200

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. 2022
  9. Published

    ngsLCA — A toolkit for fast and flexible lowest common ancestor inference and taxonomic profiling of metagenomic data

    Wang, Yucheng, Korneliussen, Thorfinn Sand, Holman, Luke Earl, Manica, A. & Pedersen, Mikkel Winther, 2022, In: Methods in Ecology and Evolution. 13, 12, p. 2699-2708 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA

    Kjær, K. H., Pedersen, M. W., De Sanctis, B., De Cahsan, B., Korneliussen, T. S., Michelsen, C. S., Sand, K. K., Jelavić, S., Ruter, A. H., Schmidt, A. M. A., Kjeldsen, K. K., Tesakov, A. S., Snowball, I., Gosse, J. C., Alsos, I. G., Wang, Y., Dockter, C., Rasmussen, M., Jørgensen, M. E., Skadhauge, B. & 19 others, Prohaska, Ana, Kristensen, J. Å., Bjerager, M., Allentoft, Morten Erik, Coissac, E., Rouillard, Alexandra, Simakova, A., Fernandez Guerra, Antonio, Bowler, C., Macias-Fauria, M., Vinner, Lasse, Welch, J. J., Hidy, A. J., Sikora, Martin, Collins, Matthew James, Durbin, R., Larsen, Nicolaj Krog, Willerslev, Eske & PhyloNorway Consortium, P. C., 2022, In: Nature. 612, 7939, p. 283-291 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    DistAngsd: Fast and Accurate Inference of Genetic Distances for Next-Generation Sequencing Data

    Zhao, Lei, Nielsen, Rasmus & Korneliussen, Thorfinn Sand, 2022, In: Molecular Biology and Evolution. 39, 6, 14 p., msac119.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published
  13. Published

    Fast and accurate estimation of multidimensional site frequency spectra from low-coverage high-throughput sequencing data

    Mas-Sandoval, A., Pope, N. S., Nielsen, Knud Nor, Altinkaya, Isin, Fumagalli, M. & Korneliussen, Thorfinn Sand, 2022, In: GigaScience. 11, 9 p., giac032.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Genetic risk for Multiple Sclerosis originated in Pastoralist Steppe populations

    Barrie, W., Yang, Y., Attfield, K. E., Irving-Pease, E., Scorrano, G., Jensen, L. T., Armen, A. P., Dimopoulos, E. A., Stern, A., Refoyo-Martínez, A., Ramsøe, A., Gaunitz, C., Demeter, F., Jørkov, M. L. S., Møller, S. B., Springborg, B., Klassen, L., Hyldgård, I. M., Wickmann, N., Vinner, L. & 9 others, Korneliussen, Thorfinn Sand, Sikora, Martin, Kristiansen, K., Rodriguez, S., Nielsen, Rasmus, Iversen, A. K. N., Lawson, D. J., Fugger, L. & Willerslev, Eske, 2022, bioRxiv, 55 p.

    Research output: Working paperPreprintResearch

  15. Published

    LocalNgsRelate: a software tool for inferring IBD sharing along the genome between pairs of individuals from low-depth NGS data

    Severson, A. L., Korneliussen, Thorfinn Sand & Moltke, Ida, 2022, In: Bioinformatics. 38, 4, p. 1159-1161 3 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Modeling the spatiotemporal spread of beneficial alleles using ancient genomes

    Muktupavela, Rasa Audange, Petr, Martin, Ségurel, L., Korneliussen, Thorfinn Sand, Novembre, J. & Racimo, Fernando, 2022, In: eLife. 11, 33 p., e73767.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Population Genomics of Stone Age Eurasia

    Allentoft, M. E., Sikora, M., Refoyo-Martínez, A., Irving-Pease, E. K., Fischer, A., Barrie, W., Ingason, A., Stenderup, J., Sjögren, K-G., Pearson, A., Mota, B., Paulsson, B. S., Halgren, A., Macleod, R., Schjellerup Jørkov, M. L., Demeter, F., Novosolov, M., Sørensen, L., Nielsen, P-O., Henriksen, R. H. A. & 143 others, Vimala, Tharsika, McColl, Hugh, Margaryan, Ashot, Ilardo, M., Vaughn, A., Mortensen, M. F., Nielsen, A. B., Hede, M. U., Rasmussen, P., Vinner, Lasse, Renaud, Gabriel, Stern, A., Jensen, Theis Zetner Trolle, Johannsen, N. N., Scorrano, Gabriele, Schroeder, Hannes, Lysdahl, P., Ramsøe, Abigail Daisy, Skorobogatov, A., Schork, A. J., Rosengren, A., Ruter, Anthony Henry, Outram, A., Timoshenko, A. A., Buzhilova, A., Coppa, A., Zubova, A., Silva, A. M., Hansen, Anders Johannes, Gromov, A., Logvin, A., Gotfredsen, Anne Birgitte, Nielsen, B. H., González-Rabanal, B., Lalueza-Fox, C., McKenzie, C. J., Gaunitz, Charleen, Blasco, C., Liesau, C., Martinez-Labarga, C., Pozdnyakov, D. V., Cuenca-Solana, D., Lordkipanidze, D. O., En’shin, D., Salazar-García, D. C., Price, T. D., Borić, D., Kostyleva, E., Veselovskaya, E. V., Usmanova, E. R., Cappellini, Enrico, Petersen, Erik Brinch, Kannegaard, E., Radina, F., Yediay, Fulya Eylem, Duday, H., Gutiérrez-Zugasti, I., Potekhina, I., Shevnina, I., Altinkaya, Isin, Guilaine, J., Hansen, J., Tortosa, J. E. A., Zilhão, J., Vega, J., Pedersen, K. B., Tunia, K., Zhao, Lei, Mylnikova, L. N., Larsson, L., Metz, L., Yeppiskoposyan, L., Pedersen, L., Sarti, L., Orlando, L., Slimak, L., Klassen, L., Blank, M., González-Morales, M., Silvestrini, M., Vretemark, M., Nesterova, M. S., Rykun, M., Rolfo, M. F., Szmyt, M., Przybyła, M., Calattini, M., Sablin, M., Dobisíková, M., Meldgaard, Morten, Johansen, M., Berezina, N., Card, N., Saveliev, N. A., Poshekhonova, O., Rickards, O., Lozovskaya, O. V., Uldum, O. C., Aurino, P., Kosintsev, P., Courtaud, P., Ríos, P., Mortensen, P., Lotz, P., Persson, P. Å., Bangsgaard, Pernille, Damgaard, P. D. B., Petersen, P. V., Martinez, P. P., Włodarczak, P., Smolyaninov, R. V., Maring, R., Menduiña, R., Badalyan, R., Iversen, Rune, Turin, R., Vasilyiev, S., Wåhlin, S., Borutskaya, S., Skochina, S., Sørensen, S. A., Andersen, S. H., Jørgensen, T., Serikov, Y. B., Molodin, V. I., Smrcka, V., Merz, V., Appadurai, V., Moiseyev, V., Magnusson, Y., Kjær, Kurt H., Lynnerup, Niels, Lawson, D. J., Sudmant, P. H., Rasmussen, Simon, Korneliussen, Thorfinn Sand, Durbin, R., Nielsen, R., Delaneau, O., Werge, Thomas, Racimo, Fernando, Kristiansen, K. & Willerslev, Eske, 2022, p. 1-71, (bioRxiv).

    Research output: Working paperPreprintResearch

  18. Published

    Reply to: When did mammoths go extinct?

    Wang, Y., Prohaska, A., Dong, H., Alberti, A., Alsos, I. G., Beilman, D. W., Bjørk, A. A., Cao, J., Cherezova, A. A., Coissac, E., De Sanctis, B., Denoeud, F., Dockter, C., Durbin, R., Edwards, M. E., Edwards, N. R., Esdale, J., Fedorov, G. B., Fernandez-Guerra, A., Froese, D. G. & 32 others, Gusarova, G., Haile, James Seymour, Holden, P. B., Kjeldsen, Kristian Kjellerup, Kjær, Kurt H., Korneliussen, Thorfinn Sand, Lammers, Y., Larsen, Nicolaj Krog, Macleod, R., Mangerud, J., McColl, Hugh, Merkel, M. K. F., Money, D., Möller, P., Nogues, David Bravo, Orlando, L., Owens, Hannah Lois, Pedersen, Mikkel Winther, Racimo, Fernando, Rahbek, Carsten, Rasic, J. T., Rouillard, Alexandra, Ruter, Anthony Henry, Skadhauge, B., Svendsen, J. I., Tikhonov, A., Vinner, Lasse, Wincker, P., Xing, Y., Zhang, Y., Meltzer, D. J. & Willerslev, Eske, 2022, In: Nature. 612, 7938, p. E4-E6

    Research output: Contribution to journalComment/debateResearchpeer-review

  19. Published

    The Selection Landscape and Genetic Legacy of Ancient Eurasians

    Irving-Pease, E., Refoyo Martínez, A., Ingason, A., Pearson, A., Fischer, A., Barrie, W., Sjögren, K-G., Halgren, A. S., Macleod, R., Demeter, F., Henriksen, R. H. A., Vimala, T., McColl, H., Vaughn, A., Stern, A. J., Speidel, L., Scorrano, G., Ramsøe, A., Schork, A. J., Rosengren, A. & 12 others, Zhao, Lei, Kristiansen, K., Sudmant, P. H., Lawson, D. J., Durbin, R., Korneliussen, Thorfinn Sand, Werge, Thomas, Allentoft, Morten Erik, Sikora, Martin, Nielsen, Rasmus, Racimo, Fernando & Willerslev, Eske, 2022, bioRxiv, 26 p.

    Research output: Working paperPreprintResearch

  20. Published

    The formation of avian montane diversity across barriers and along elevational gradients

    Pujolar, J. M., Blom, M. P. K., Hart Reeve, A., Kennedy, J. D., Marki, P. Z., Korneliussen, Thorfinn Sand, Freeman, B. G., Sam, K., Linck, E., Haryoko, T., Iova, B., Koane, B., Maiah, G., Paul, L., Irestedt, M. & Jønsson, Knud Andreas, 2022, In: Nature Communications. 13, 13 p., 268.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. 2021
  22. Published
  23. Published

    A reference-free approach to analyse RADseq data using standard next generation sequencing toolkits

    Heller, Rasmus, Nursyifa, Casia, Garcia Erill, Genís, Salmona, J., Chikhi, L., Meisner, Jonas, Korneliussen, Thorfinn Sand & Albrechtsen, Anders, 2021, In: Molecular Ecology Resources. 21, 4, p. 1085-1097 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Extensive Genome-Wide Phylogenetic Discordance Is Due to Incomplete Lineage Sorting and Not Ongoing Introgression in a Rapidly Radiated Bryophyte Genus

    Meleshko, O., Martin, M. D., Korneliussen, Thorfinn Sand, Schröck, C., Lamkowski, P., Schmutz, J., Healey, A., Piatkowski, B. T., Shaw, A. J., Weston, D. J., Flatberg, K. I., Szövényi, P., Hassel, K. & Stenøien, H. K., 2021, In: Molecular Biology and Evolution. 38, 7, p. 2750-2766 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Identifying a living great-grandson of the Lakota Sioux leader Tatanka Iyotake (Sitting Bull)

    Moltke, Ida, Korneliussen, Thorfinn Sand, Seguin-Orlando, A., Moreno Mayar, J. Víctor, LaPointe, E., Billeck, W. & Willerslev, Eske, 2021, In: Science Advances. 7, 44, 7 p., eabh2013.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Late Quaternary dynamics of Arctic biota from ancient environmental genomics: [+ Correction]

    Wang, Y., Pedersen, M. W., Alsos, I. G., De Sanctis, B., Racimo, F., Prohaska, A., Coissac, E., Owens, H. L., Merkel, M. K. F., Fernandez-Guerra, A., Rouillard, A., Lammers, Y., Alberti, A., Denoeud, F., Money, D., Ruter, A. H., McColl, H., Larsen, N. K., Cherezova, A. A., Edwards, M. E. & 30 others, Fedorov, G. B., Haile, James Seymour, Orlando, L., Vinner, Lasse, Korneliussen, Thorfinn Sand, Beilman, D. W., Bjørk, Anders Anker, Cao, Jialu, Dockter, C., Esdale, J., Gusarova, G., Kjeldsen, Kristian Kjellerup, Mangerud, J., Rasic, J. T., Skadhauge, B., Svendsen, J. I., Tikhonov, A., Wincker, P., Xing, Y., Zhang, Y., Froese, D. G., Rahbek, Carsten, Nogues, David Bravo, Holden, P. B., Edwards, N. R., Durbin, R., Meltzer, D. J., Kjær, Kurt H., Möller, P. & Willerslev, Eske, 2021, In: Nature. 600, 7887, p. 86–92 19 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. 2020
  28. Published

    A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data

    Moreno-Mayar, J. V., Korneliussen, Thorfinn Sand, Dalal, J., Renaud, Gabriel, Albrechtsen, Anders, Nielsen, Rasmus & Malaspinas, A., 2020, In: Bioinformatics. 36, 3, p. 828-841 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Ancient Jomon genome sequence analysis sheds light on migration patterns of early East Asian populations

    Gakuhari, T., Nakagome, S., Rasmussen, S., Allentoft, M. E., Sato, T., Korneliussen, T., Chuinneagain, B. N., Matsumae, H., Koganebuchi, K., Schmidt, R., Mizushima, S., Kondo, O., Shigehara, N., Yoneda, M., Kimura, R., Ishida, H., Masuyama, T., Yamada, Y., Tajima, A., Shibata, H. & 8 others, Toyoda, A., Tsurumoto, T., Wakebe, T., Shitara, H., Hanihara, T., Willerslev, Eske, Sikora, Martin & Oota, H., 2020, In: Communications Biology . 3, 1, 10 p., 437.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Population genomics of the Viking world: [incl. correction]

    Margaryan, A., Lawson, D. J., Sikora, M., Racimo, F., Rasmussen, S., Moltke, I., Cassidy, L. M., Jørsboe, E., Ingason, A., Pedersen, M. W., Korneliussen, T., Wilhelmson, H., Buś, M. M., de Barros Damgaard, P., Martiniano, R., Renaud, G., Bhérer, C., Moreno-Mayar, J. V., Fotakis, A. K., Allen, M. & 30 others, Allmäe, R., Molak, M., Cappellini, Enrico, Scorrano, Gabriele, McColl, Hugh, Buzhilova, A., Fox, A., Albrechtsen, Anders, Schütz, B., Skar, B., Arcini, C., Lundstrøm, I., Cheng, J., Stenderup, Jesper Tandberg, Iversen, K. H., Arge, S. V., Ellingvåg, S., Orlando, L., Pentz, P., Jessen, M. D., Pedersen, A., Jørkov, M L S, Lynnerup, Niels, Gilbert, M Thomas P, Allentoft, Morten Erik, Sindbæk, S. M., Kristiansen, K., Nielsen, Rasmus, Werge, Thomas & Willerslev, Eske, 2020, In: Nature. 585, 7825, p. 390-396 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

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ID: 41892155