Antonio Fernandez Guerra

Antonio Fernandez Guerra

Tenure Track Assistant Professor


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  1. Geographic distribution at subspecies resolution level: closely related Rhodopirellula species in European coastal sediments

    Zure, Marina, Fernandez Guerra, Antonio, Munn, C. B. & Harder, J., Feb 2017, In: ISME Journal. 11, 2, p. 478-489 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir

    Yates, J. A. F., Andrades Valtuena, A., Vågene, Åshild Joanne, Cribdon, B., Velsko, I. M., Borry, M., Bravo-Lopez, M. J., Fernandez Guerra, Antonio, Green, E. J., Ramachandran, S. L., Heintzman, P. D., Spyrou, M. A., Huebner, A., Gancz, A. S., Hider, J., Allshouse, A. F., Zaro, V. & Warinner, C., 2021, In: Scientific Data. 8, 8 p., 31.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Late Quaternary dynamics of Arctic biota from ancient environmental genomics: [+ Correction]

    Wang, Y., Pedersen, M. W., Alsos, I. G., De Sanctis, B., Racimo, F., Prohaska, A., Coissac, E., Owens, H. L., Merkel, M. K. F., Fernandez-Guerra, A., Rouillard, A., Lammers, Y., Alberti, A., Denoeud, F., Money, D., Ruter, A. H., McColl, H., Larsen, N. K., Cherezova, A. A., Edwards, M. E. & 30 others, Fedorov, G. B., Haile, James Seymour, Orlando, L., Vinner, Lasse, Korneliussen, Thorfinn Sand, Beilman, D. W., Bjørk, Anders Anker, Cao, Jialu, Dockter, C., Esdale, J., Gusarova, G., Kjeldsen, Kristian Kjellerup, Mangerud, J., Rasic, J. T., Skadhauge, B., Svendsen, J. I., Tikhonov, A., Wincker, P., Xing, Y., Zhang, Y., Froese, D. G., Rahbek, Carsten, Nogues, David Bravo, Holden, P. B., Edwards, N. R., Durbin, R., Meltzer, D. J., Kjær, Kurt H., Möller, P. & Willerslev, Eske, 2021, In: Nature. 600, 7887, p. 86–92 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Reply to: When did mammoths go extinct?

    Wang, Y., Prohaska, A., Dong, H., Alberti, A., Alsos, I. G., Beilman, D. W., Bjørk, A. A., Cao, J., Cherezova, A. A., Coissac, E., De Sanctis, B., Denoeud, F., Dockter, C., Durbin, R., Edwards, M. E., Edwards, N. R., Esdale, J., Fedorov, G. B., Fernandez-Guerra, A., Froese, D. G. & 32 others, Gusarova, G., Haile, James Seymour, Holden, P. B., Kjeldsen, Kristian Kjellerup, Kjær, Kurt H., Korneliussen, Thorfinn Sand, Lammers, Y., Larsen, Nicolaj Krog, Macleod, R., Mangerud, J., McColl, Hugh, Merkel, M. K. F., Money, D., Möller, P., Nogues, David Bravo, Orlando, L., Owens, Hannah Lois, Pedersen, Mikkel Winther, Racimo, Fernando, Rahbek, Carsten, Rasic, J. T., Rouillard, Alexandra, Ruter, Anthony Henry, Skadhauge, B., Svendsen, J. I., Tikhonov, A., Vinner, Lasse, Wincker, P., Xing, Y., Zhang, Y., Meltzer, D. J. & Willerslev, Eske, 2022, In: Nature. 612, 7938, p. E4-E6

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  5. Optimized R functions for analysis of ecological community data using the R virtual laboratory (RvLab)

    Varsos, C., Patkos, T., Oulas, A., Pavloudi, C., Gougousis, A., Ijaz, U. Z., Filiopoulou, I., Pattakos, N., Berghe, E. V., Fernandez Guerra, Antonio, Faulwetter, S., Chatzinikolaou, E., Pafilis, E., Bekiari, C., Doerr, M. & Arvanitidis, C., 2016, In: Biodiversity Data Journal. 4, 28 p., e8357.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Unifying the known and unknown microbial coding sequence space

    Vanni, C., Schechter, M. S., Acinas, S. G., Barberán, A., Buttigieg, P. L., Casamayor, E. O., Delmont, T. O., Duarte, C. M., Eren, A. M., Finn, R. D., Kottmann, R., Mitchell, A., Sánchez, P., Siren, K., Steinegger, M., Glöckner, F. O. & Fernandez Guerra, Antonio, 2022, In: eLife. 11, 60 p., e67667.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. The Genome of the Sea Urchin Strongylocentrotus purpuratus

    Sodergren, E., Weinstock, G. M., Davidson, E. H., Cameron, R. A., Gibbs, R. A., Angerer, R. C., Angerer, L. M., Arnone, M. I., Burgess, D. R., Burke, R. D., Cameron, R. A., Coffman, J. A., Davidson, E. H., Dean, M., Elphick, M. R., Ettensohn, C. A., Foltz, K. R., Hamdoun, A., Hynes, R. O., Klein, W. H. & 28 others, Marzluff, W., McClay, D. R., Morris, R. L., Mushegian, A., Rast, J. P., Sodergren, E., Smith, L. C., Thorndyke, M. C., Vacquier, V. D., Weinstock, G. M., Wessel, G. M., Wray, G., Zhang, L., Sodergren, E., Weinstock, G. M., Angerer, R. C., Angerer, L. M., Cameron, R. A., Davidson, E. H., Elsik, C. G., Ermolaeva, O., Hlavina, W., Hofmann, G., Kitts, P., Fernandez Guerra, Antonio, Wang, D., Rizzo, F. & Sea Urchin, S. U., 2006, In: Science. 314, 5801, p. 941-952

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Verrucomicrobia use hundreds of enzymes to digest the algal polysaccharide fucoidan

    Sichert, A., Corzett, C. H., Schechter, M. S., Unfried, F., Markert, S., Becher, D., Fernandez Guerra, Antonio, Liebeke, M., Schweder, T., Polz, M. F. & Hehemann, J. H., 2020, In: Nature Microbiology. 5, p. 1026-1039

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. MyOSD 2014: Evaluating Oceanographic Measurements Contributed by Citizen Scientists in Support of Ocean Sampling Day

    Schnetzer, J., Kopf, A., Bietz, M. J., Buttigieg, P. L., Fernandez Guerra, Antonio, Ristov, A. P., Gloeckner, F. O. & Kottmann, R., 2016, In: Journal of Microbiology and Biology Education. 17, 1, p. 163-171

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Comparative Genomic Analysis Reveals a Diverse Repertoire of Genes Involved in Prokaryote-Eukaryote Interactions within the Pseudovibrio Genus

    Romano, S., Fernandez Guerra, Antonio, Reen, F. J., Gloeckner, F. O., Crowley, S. P., O'Sullivan, O., Cotter, P. D., Adams, C., Dobson, A. D. W. & O'Gara, F., 2016, In: Frontiers in Microbiology. 7, 20 p., 387.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems

    Richter, D. J., Watteaux, R., Vannier, T., Leconte, J., Frémont, P., Reygondeau, G., Maillet, N., Henry, N., Benoit, G., Da Silva, O., Delmont, T. O., Fernàndez-Guerra, A., Suweis, S., Narci, R., Berney, C., Eveillard, D., Gavory, F., Guidi, L., Labadie, K., Mahieu, E. & 27 others, Poulain, J., Romac, S., Roux, S., Dimier, C., Kandels, S., Picheral, M., Searson, S., Pesant, S., Aury, J., Brum, J. R., Lemaitre, C., Pelletier, E., Bork, P., Sunagawa, S., Lombard, F., Karp-Boss, L., Bowler, C., Sullivan, M. B., Karsenti, E., Mariadassou, M., Probert, I., Peterlongo, P., Wincker, P., de Vargas, C., d'Alcalà, M. R., Iudicone, D. & Jaillon, O., 2022, In: eLife. 11, 30 p., e78129.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Secondary metabolite biosynthetic diversity in Arctic Ocean metagenomes

    Rego, A., Fernandez Guerra, Antonio, Duarte, P., Assmy, P., Leão, P. N. & Magalhães, C., 2021, In: Microbial genomics. 7, 12, 14 p., 000731.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Mining metagenomes for natural product biosynthetic gene clusters: unlocking new potential with ultrafast techniques

    Pereira-Flores, E., Medema, M., Buttigieg, P. L., Meinicke, P., Glöckner, F. O. & Fernandez Guerra, Antonio, 2021, 29 p. (bioRxiv).

    Research output: Working paper › Preprint › Research

  14. Analysis of phytoplankton assemblage structure in the Mediterranean Sea based on high-throughput sequencing of partial 18S rRNA sequences

    Penna, A., Casabianca, S., Fernandez Guerra, Antonio, Vernesi, C. & Scardi, M., Dec 2017, In: Marine Genomics. 36, p. 49-55 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Inter-comparison of marine microbiome sampling protocols

    Pascoal, F., Tomasino, M. P., Piredda, R., Quero, G. M., Torgo, L., Poulain, J., Galand, P. E., Fuhrman, J. A., Mitchell, A., Tinta, T., Turk Dermastia, T., Fernandez-Guerra, A., Vezzi, A., Logares, R., Malfatti, F., Endo, H., Dąbrowska, A. M., De Pascale, F., Sánchez, P., Henry, N. & 9 others, Fosso, B., Wilson, B., Toshchakov, S., Ferrant, G. K., Grigorov, I., Vieira, F. R. J., Costa, R., Pesant, S. & Magalhães, C., 2023, In: ISME communications. 3, 16 p., 84.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Pheromone Evolution, Reproductive Genes, and Comparative Transcriptomics in Mediterranean Earthworms (Annelida, Oligochaeta, Hormogastridae)

    Novo, M., Riesgo, A., Fernandez Guerra, Antonio & Giribet, G., 2013, In: Molecular Biology and Evolution. 30, 7, p. 1614-1629

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    A computational framework to explore large-scale biosynthetic diversity

    Navarro-Muñoz, J. C., Selem-Mojica, N., Mullowney, M. W., Kautsar, S. A., Tryon, J. H., Parkinson, E. I., De Los Santos, E. L. C., Yeong, M., Cruz-Morales, P., Abubucker, S., Roeters, A., Lokhorst, W., Fernandez Guerra, Antonio, Cappelini, L. T. D., Goering, A. W., Thomson, R. J., Metcalf, W. W., Kelleher, N. L., Barona-Gomez, F. & Medema, M. H., Jan 2020, In: Nature Chemical Biology. 16, 1, p. 60-68 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Molecular recognition of the beta-glucans laminarin and pustulan by a SusD-like glycan-binding protein of a marine Bacteroidetes

    Mystkowska, A. A., Robb, C., Vidal-Melgosa, S., Vanni, C., Fernandez Guerra, Antonio, Hoehne, M. & Hehemann, J., 2018, In: FEBS Journal. 285, 23, p. 4465-4481

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Renewal of planktonic foraminifera diversity after the Cretaceous Paleogene mass extinction by benthic colonizers

    Morard, R., Hassenrück, C., Greco, M., Fernandez Guerra, Antonio, Rigaud, S., Douady, C. J. & Kucera, M., 2022, In: Nature Communications. 13, 9 p., 7135.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Genomic adaptation of giant viruses in polar oceans

    Meng, L., Delmont, T. O., Gaïa, M., Pelletier, E., Fernandez Guerra, Antonio, Chaffron, S., Neches, R. Y., Wu, J., Kaneko, H., Endo, H. & Ogata, H., 2023, In: Nature Communications. 14, 12 p., 6233.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Meta-SourceTracker: application of Bayesian source tracking to shotgun metagenomics

    McGhee, J. J., Rawson, N., Bailey, B. A., Fernandez Guerra, Antonio, Sisk-Hackworth, L. & Kelley, S. T., 2020, In: PeerJ. 8, 18 p., 8783.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Determinants and Prediction of Esterase Substrate Promiscuity Patterns

    Martinez-Martinez, M., Coscolin, C., Santiago, G., Chow, J., Stogios, P. J., Bargiela, R., Gertler, C., Navarro-Fernandez, J., Bollinger, A., Thies, S., Mendez-Garcia, C., Popovic, A., Brown, G., Chernikova, T. N., Garcia-Moyano, A., Bjerga, G. E. K., Perez-Garcia, P., Hai, T., Del Pozo, M. V., Stokke, R. & 22 others, Steen, I. H., Cui, H., Xu, X., Nocek, B. P., Alcaide, M., Distaso, M., Mesa, V., Pelaez, A. I., Sanchez, J., Buchholz, P. C. F., Pleiss, J., Fernandez Guerra, Antonio, Gloeckner, F. O., Golyshina, O. V., Yakimov, M. M., Savchenko, A., Jaeger, K., Yakunin, A. F., Streit, W. R., Golyshin, P. N., Guallar, V. & Ferrer, M., Jan 2018, In: ACS chemical biology. 13, 1, p. 225-234 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Linking Spatial and Temporal Dynamic of Bacterioplankton Communities With Ecological Strategies Across a Coastal Frontal Area

    Lemonnier, C., Perennou, M., Eveillard, D., Fernandez Guerra, Antonio, Leynaert, A., Marie, L., Morrison, H. G., Memery, L., Paillard, C. & Maignien, L., 2020, In: Frontiers in Marine Science. 7, 13 p., 376.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. The ocean sampling day consortium

    Kopf, A., Bicak, M., Kottmann, R., Schnetzer, J., Kostadinov, I., Lehmann, K., Fernandez-Guerra, A., Jeanthon, C., Rahav, E., Ullrich, M., Wichels, A., Gerdts, G., Polymenakou, P., Kotoulas, G., Siam, R., Abdallah, R. Z., Sonnenschein, E. C., Cariou, T., O'Gara, F., Jackson, S. & 31 others, Orlic, S., Steinke, M., Busch, J., Duarte, B., Caçador, I., Canning-Clode, J., Bobrova, O., Marteinsson, V., Reynisson, E., Loureiro, C. M., Luna, G. M., Quero, G. M., Loescher, C. R., Kremp, A., DeLorenzo, M. E., Ovreas, L., Tolman, J., LaRoche, J., Penna, A., Frischer, M., Davis, T., Katherine, B., Meyer, C. P., Ramos, S., Magalhaes, C., Jude-Lemeilleur, F., Leopoldina Aguirre-Macedo, M., Wang, S., Poulton, N., Martin, P. & OSD, O., 2015, In: GigaScience. 4, 5 p., 27.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  25. Published

    A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA

    Kjær, K. H., Pedersen, M. W., De Sanctis, B., De Cahsan, B., Korneliussen, T. S., Michelsen, C. S., Sand, K. K., Jelavić, S., Ruter, A. H., Schmidt, A. M. A., Kjeldsen, K. K., Tesakov, A. S., Snowball, I., Gosse, J. C., Alsos, I. G., Wang, Y., Dockter, C., Rasmussen, M., Jørgensen, M. E., Skadhauge, B. & 19 others, Prohaska, Ana, Kristensen, J. Å., Bjerager, M., Allentoft, Morten Erik, Coissac, E., Rouillard, Alexandra, Simakova, A., Fernandez Guerra, Antonio, Bowler, C., Macias-Fauria, M., Vinner, Lasse, Welch, J. J., Hidy, A. J., Sikora, Martin, Collins, Matthew James, Durbin, R., Larsen, Nicolaj Krog, Willerslev, Eske & PhyloNorway Consortium, P. C., 2022, In: Nature. 612, 7939, p. 283-291 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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ID: 235125386