Antton Alberdi Estibaritz

Antton Alberdi Estibaritz

Associate Professor


  1. 2024
  2. E-pub ahead of print

    Field and laboratory guidelines for reliable bioinformatic and statistical analysis of bacterial shotgun metagenomic data

    Aizpurua Arrieta, Ostaizka, Dunn, Rob, Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Alberdi, Antton, 2024, (E-pub ahead of print) In: Critical Reviews in Biotechnology.

    Research output: Contribution to journalReviewpeer-review

  3. 2023
  4. E-pub ahead of print

    DNA metabarcoding reveals seasonal changes in diet composition across four arthropod-eating lizard species (Phrynosomatidae: Sceloporus)

    Hernández, M., Hereira-Pacheco, S., Alberdi, Antton, De La Vega-Pérez, A. H. D., Estrada-Torres, A., Ancona, S. & Navarro-Noya, Y. E., 7 Aug 2023, (E-pub ahead of print) In: Integrative Zoology. 16 p.

    Research output: Contribution to journalJournal articlepeer-review

  5. Published

    A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants

    Rice, E. S., Alberdi, A., Alfieri, J., Athrey, G., Balacco, J. R., Bardou, P., Blackmon, H., Charles, M., Cheng, H. H., Fedrigo, O., Fiddaman, S. R., Formenti, G., Frantz, L. A. F., Gilbert, M. T. P., Hearn, C. J., Jarvis, E. D., Klopp, C., Marcos, S., Mason, A. S., Velez-Irizarry, D. & 2 others, Xu, L. & Warren, W. C., 2023, In: BMC Biology. 21, 17 p., 267.

    Research output: Contribution to journalJournal articlepeer-review

  6. Published

    A simplified protocol for DNA extraction from FTA cards for faecal microbiome studies

    Botnen, A. B., Bjørnsen, Mads Bjørn, Alberdi, Antton, Gilbert, M Thomas P & Aizpurua Arrieta, Ostaizka, 2023, In: Heliyon. 9, 1, 10 p., e12861.

    Research output: Contribution to journalJournal articlepeer-review

  7. Published

    A species-level trait dataset of bats in Europe and beyond

    Froidevaux, J. S. P., Toshkova, N., Barbaro, L., Benítez-López, A., Kerbiriou, C., Le Viol, I., Pacifici, M., Santini, L., Stawski, C., Russo, D., Dekker, J., Alberdi, A., Amorim, F., Ancillotto, L., Barré, K., Bas, Y., Cantú-Salazar, L., Dechmann, D. K. N., Devaux, T., Eldegard, K. & 28 others, Fereidouni, S., Furmankiewicz, J., Hamidovic, D., Hill, D. L., Ibáñez, C., Julien, J. F., Juste, J., Kaňuch, P., Korine, C., Laforge, A., Legras, G., Leroux, C., Lesiński, G., Mariton, L., Marmet, J., Mata, V. A., Mifsud, C. M., Nistreanu, V., Novella-Fernandez, R., Rebelo, H., Roche, N., Roemer, C., Ruczyński, I., Sørås, R., Uhrin, M., Vella, A., Voigt, C. C. & Razgour, O., 2023, In: Scientific Data. 10, 13 p., 253.

    Research output: Contribution to journalJournal articlepeer-review

  8. Published

    Bacterial topography of the upper and lower respiratory tract in pigs

    Pirolo, Mattia, Espinosa-Gongora, C., Alberdi, Antton, Eisenhofer Philipona, Raphael A, Soverini, M., Eriksen, E. Ø., Pedersen, Ken Steen & Guardabassi, Luca, 2023, In: BMC Animal Microbiome. 5, 13 p., 5.

    Research output: Contribution to journalJournal articlepeer-review

  9. Published

    Impact of microbial genome completeness on metagenomic functional inference

    Eisenhofer Philipona, Raphael A, Larrañaga, Iñaki Odriozola & Alberdi, Antton, 2023, In: ISME communications. 3, 5 p., 12.

    Research output: Contribution to journalJournal articlepeer-review

  10. Published

    Mammals show distinct functional gut microbiome dynamics to identical series of environmental stressors

    Koziol, Adam Leslie, Larrañaga, Iñaki Odriozola, Leonard, A., Eisenhofer Philipona, Raphael A, José, C. S., Aizpurua Arrieta, Ostaizka & Alberdi, Antton, 2023, In: mBio. 14, 5, 17 p., e01606-23.

    Research output: Contribution to journalJournal articlepeer-review

  11. Published

    Unravelling animal–microbiota evolution on a chip

    Aizpurua Arrieta, Ostaizka, Blijleven, Kees, Trivedi, Urvish, Gilbert, M Thomas P & Alberdi, Antton, 2023, In: Trends in Microbiology. 31, 10, p. 995-1002 8 p.

    Research output: Contribution to journalReviewpeer-review

  12. 2022
  13. Published

    Disentangling host–microbiota complexity through hologenomics

    Alberdi, Antton, Andersen, Sandra Breum, Limborg, Morten Tønsberg, Dunn, Rob & Gilbert, M Thomas P, 2022, In: Nature Reviews Genetics. 23, 5, p. 281-297 17 p.

    Research output: Contribution to journalReviewpeer-review

  14. Published
  15. Published
  16. Published

    Novel strategies to improve chicken performance and welfare by unveiling host-microbiota interactions through hologenomics

    Tous, N., Marcos, S., Goodarzi Boroojeni, F., Pérez de Rozas, A., Zentek, J., Estonba, A., Sandvang, D., Gilbert, M Thomas P, Esteve-Garcia, E., Finn, R., Alberdi, Antton & Tarradas, J., 2022, In: Frontiers in Physiology. 13, 14 p., 884925.

    Research output: Contribution to journalJournal articlepeer-review

  17. Published

    Recovering High-Quality Host Genomes from Gut Metagenomic Data through Genotype Imputation

    Marcos, S., Parejo, M., Estonba, A. & Alberdi, Antton, 2022, In: Advanced Genetics. 3, 3, 14 p., 2100065.

    Research output: Contribution to journalJournal articlepeer-review

  18. Published

    The Contribution of Desert-Dwelling Bats to Pest Control in Hyper-Arid Date Agriculture

    Schackermann, J., Morris, E. J. J., Alberdi, Antton, Razgour, O. & Korine, C., 2022, In: Diversity. 14, 12, 14 p., 1034.

    Research output: Contribution to journalJournal articlepeer-review

  19. 2021
  20. Published

    Broad-scale patterns of geographic avoidance between species emerge in the absence of fine-scale mechanisms of coexistence

    Novella-Fernandez, R., Juste, J., Ibáñez, C., Rebelo, H., Russo, D., Alberdi, Antton, Kiefer, A., Graham, L., Paul, H., Doncaster, C. P. & Razgour, O., 2021, In: Diversity and Distributions. 27, 9, p. 1606-1618 13 p.

    Research output: Contribution to journalJournal articlepeer-review

  21. Published

    Diversity and compositional changes in the gut microbiota of wild and captive vertebrates: a meta-analysis

    Alberdi, Antton, Martin Bideguren, Garazi & Aizpurua Arrieta, Ostaizka, 2021, In: Scientific Reports. 11, 10 p., 22660.

    Research output: Contribution to journalJournal articlepeer-review

  22. Published

    The gut microbiome buffers dietary adaptation in Bronze Age domesticated dogs

    Rampelli, S., Turroni, S., Debandi, F., Alberdi, Antton, Schnorr, S. L., Hofman, C. A., Taddia, A., Helg, R., Biagi, E., Brigidi, P., D'Amico, F., Cattani, M. & Candela, M., 2021, In: iScience. 24, 8, 20 p., 102816.

    Research output: Contribution to journalJournal articlepeer-review

  23. Published

    The role of the gut microbiota in the dietary niche expansion of fishing bats

    Aizpurua Arrieta, Ostaizka, Jessen, Lasse Nyholm, Morris, E., Chaverri, G., Montalvo, L. G. H., Flores-Martinez, J. J., Lin, A., Razgour, O., Gilbert, M Thomas P & Alberdi, Antton, 2021, In: BMC Animal Microbiome. 3, 14 p., 76.

    Research output: Contribution to journalJournal articlepeer-review

  24. 2020
  25. Published

    The long-term restoration of ecosystem complexity

    Moreno-Mateos, D., Alberdi, Antton, Morrien, E., van der Putten, W. H., Rodriguez-Una, A. & Montoya, D., May 2020, In: Nature Ecology & Evolution. 4, 5, p. 676-685 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  26. Published

    Comparative Microbiome Analysis Reveals the Ecological Relationships Between Rumen Methanogens, Acetogens, and Their Hosts

    Li, Z., Wang, X., Alberdi, Antton, Deng, J., Zhong, Z., Si, H., Zheng, C., Zhou, H., Wang, J., Yang, Y., Wright, A. D. G., Mao, S., Zhang, Z., Guan, L. & Li, G., 2020, In: Frontiers in Microbiology. 11, 14 p., 1311.

    Research output: Contribution to journalJournal articlepeer-review

  27. Published

    DNA metabarcoding and spatial modelling link diet diversification with distribution homogeneity in European bats

    Alberdi, Antton, Razgour, O., Aizpurua Arrieta, Ostaizka, Novella-Fernandez, R., Aihartza, J., Budinski, I., Garin, I., Ibanez, C., Izagirre, E., Rebelo, H., Russo, D., Vlaschenko, A., Zhelyazkova, V., Zrncic, V. & Gilbert, M Thomas P, 2020, In: Nature Communications. 11, 8 p., 1154.

    Research output: Contribution to journalJournal articlepeer-review

  28. Published
  29. 2019
  30. Published

    Promises and pitfalls of using high-throughput sequencing for diet analysis

    Alberdi, Antton, Aizpurua Arrieta, Ostaizka, Bohmann, Kristine, Gopalakrishnan, Shyam, Lynggaard, Christina Islas, Nielsen, M. & Gilbert, M Thomas P, Mar 2019, In: Molecular Ecology Resources. 19, 2, p. 327-348

    Research output: Contribution to journalReviewpeer-review

  31. Published

    A guide to the application of Hill numbers to DNA-based diversity analyses

    Alberdi, Antton & Gilbert, M Thomas P, 2019, In: Molecular Ecology Resources. 19, 4, p. 804-817 14 p.

    Research output: Contribution to journalReviewpeer-review

  32. Published

    Considering adaptive genetic variation in climate change vulnerability assessment reduces species range loss projections

    Razgour, O., Forester, B., Taggart, J. B., Bekaert, M., Juste, J., Ibáñez, C., Puechmaille, S. J., Novella-Fernandez, R., Alberdi, Antton & Manel, S., 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 21, p. 10418-10423 6 p.

    Research output: Contribution to journalJournal articlepeer-review

  33. Published

    Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin

    Hooper, R., Brealey, J. C., van der Valk, T., Alberdi, Antton, Durban, J. W., Fearnbach, H., Robertson, K. M., Baird, R. W., Bradley Hanson, M., Wade, P., Gilbert, M Thomas P, Morin, P. A., Wolf, J. B. W., Foote, A. D. & Guschanski, K., 2019, In: Molecular Ecology. 28, 2, p. 484-502 19 p.

    Research output: Contribution to journalJournal articlepeer-review

  34. 2018
  35. Published

    Plecotus macrobullaris (Chiroptera: Vespertilionidae)

    Alberdi, Antton & Aizpurua Arrieta, Ostaizka, 2018, In: Mammalian Species. 50, 958, p. 26-33

    Research output: Contribution to journalJournal articlepeer-review

  36. Published

    Agriculture shapes the trophic niche of a bat preying on multiple pest arthropods across Europe: Evidence from DNA metabarcoding

    Aizpurua Arrieta, Ostaizka, Budinski, I., Georgiakakis, P., Gopalakrishnan, Shyam, Ibanez, C., Mata, V., Rebelo, H., Russo, D., Szodoray-Paradi, F., Zhelyazkova, V., Zrncic, V., Gilbert, M Thomas P & Alberdi, Antton, 2018, In: Molecular Ecology. 27, 3, p. 815-825 11 p.

    Research output: Contribution to journalJournal articlepeer-review

  37. Published

    An integrated framework to identify wildlife populations under threat from climate change

    Razgour, O., Taggart, J. B., Manel, S., Juste, J., Ibanez, C., Rebelo, H., Alberdi, Antton, Jones, G. & Park, K., 2018, In: Molecular Ecology Resources. 18, 1, p. 18-31 14 p.

    Research output: Contribution to journalJournal articlepeer-review

  38. Published

    Applied Hologenomics: Feasibility and Potential in Aquaculture

    Limborg, Morten Tønsberg, Alberdi, Antton, Kodama, M., Roggenbuck, M., Kristiansen, Karsten & Gilbert, M Thomas P, 2018, In: Trends in Biotechnology. 36, 3, p. 252-264 13 p.

    Research output: Contribution to journalJournal articlepeer-review

  39. Published

    Assessing niche partitioning of co-occurring sibling bat species by DNA metabarcoding

    Arrizabalaga-Escudero, A., Clare, E. L., Salsamendi, E., Alberdi, Antton, Garin, I., Aihartza, J. & Goiti, U., 2018, In: Molecular Ecology. 27, 5, p. 1273-1283 11 p.

    Research output: Contribution to journalJournal articlepeer-review

  40. Published

    Ecology and evolutionary biology of fishing bats

    Aizpurua Arrieta, Ostaizka & Alberdi, Antton, 2018, In: Mammal Review. 48, 4, p. 284-297

    Research output: Contribution to journalReviewpeer-review

  41. Published

    Scrutinizing key steps for reliable metabarcoding of environmental samples

    Alberdi, Antton, Aizpurua Arrieta, Ostaizka, Gilbert, M Thomas P & Bohmann, Kristine, 2018, In: Methods in Ecology and Evolution. 9, 1, p. 134-147 14 p.

    Research output: Contribution to journalJournal articlepeer-review

  42. 2016
  43. Published

    Unveiling the hidden bat diversity of a Neotropical montane forest

    Chaverri, G., Garin, I., Alberdi, Antton, Jimenez, L., Castillo-Salazar, C. & Aihartza, J., 5 Oct 2016, In: P L o S One. 11, 10, 19 p., e0162712.

    Research output: Contribution to journalJournal articlepeer-review

  44. Published

    Do vertebrate gut metagenomes confer rapid ecological adaptation?

    Alberdi, Antton, Aizpurua Arrieta, Ostaizka, Bohmann, Kristine, Zepeda Mendoza, M. L. & Gilbert, M Thomas P, Sep 2016, In: Trends in Ecology & Evolution. 31, 9, p. 689-699 11 p.

    Research output: Contribution to journalJournal articlepeer-review

  45. Published

    The mitogenome of a 35,000-year-old Homo sapiens from Europe supports a Palaeolithic back-migration to Africa

    Hervella, M., Svensson, E. M., Alberdi, Antton, Günther, T., Izagirre, N., Munters, A. R., Alonso, S., Ioana, M., Ridiche, F., Soficaru, A., Jakobsson, M., Netea, M. G. & de-la-Rua, C., 19 May 2016, In: Scientific Reports. 6, 5 p., 25501.

    Research output: Contribution to journalJournal articlepeer-review

  46. Published

    Fishing technique of long-fingered bats was developed from a primary reaction to disappearing target stimuli

    Aizpurua, O., Alberdi, Antton, Aihartza, J. & Garin, I., 2016, In: P L o S One. 11, 12, 12 p., e0167164.

    Research output: Contribution to journalJournal articlepeer-review

  47. 2015
  48. Insight on how fishing bats discern prey and adjust their mechanic and sensorial features during the attack sequence

    Aizpurua, O., Alberdi, Antton, Aihartza, J. & Garin, I., 2015, In: Scientific Reports. 5, 8 p., 12392.

    Research output: Contribution to journalJournal articlepeer-review

  49. Living above the treeline: roosting ecology of the alpine bat Plecotus macrobullaris

    Alberdi, Antton, Aihartza, J., Aizpurua, O., Salsamendi, E., Brigham, R. M. & Garin, I., 2015, In: European Journal of Wildlife Research. 61, 1, p. 17-25 9 p.

    Research output: Contribution to journalJournal articlepeer-review

  50. Trophic requirements beyond foraging habitats: the importance of prey source habitats in bat conservation

    Arrizabalaga-Escudero, A., Garin, I., García-Mudarra, J. L., Alberdi, Antton, Aihartza, J. & Goiti, U., 2015, In: Biological Conservation. 191, p. 512-519 8 p.

    Research output: Contribution to journalJournal articlepeer-review

  51. 2014
  52. Can pinewoods provide habitat for a deciduous forest specialist? a two-scale approach to the habitat selection of Bechstein's bat

    Arrizabalaga-Escudero, A., Napal, M., Aihartza, J., Garin, I., Alberdi, Antton & Salsamendi, E., 2014, In: Mammalian Biology. 79, 2, p. 117-122 6 p.

    Research output: Contribution to journalJournal articlepeer-review

  53. Published

    Fine-tuned echolocation and capture-flight of Myotis capaccinii when facing different-sized insect and fish prey

    Aizpurua, O., Aihartza, J., Alberdi, Antton, Baagøe, Hans J. & Garin, I., 2014, In: Journal of Experimental Biology. 217, 18, p. 3318-3325 8 p.

    Research output: Contribution to journalJournal articlepeer-review

  54. Unveiling the factors shaping the distribution of widely distributed alpine vertebrates, using multi-scale ecological niche modelling of the bat Plecotus macrobullaris

    Alberdi, Antton, Aizpurua, O., Aihartza, J. & Garin, I., 2014, In: Frontiers in Zoology. 11, 13 p., 77.

    Research output: Contribution to journalJournal articlepeer-review

  55. 2013
  56. Review on the geographic and elevational distribution of the mountain long-eared bat Plecotus macrobullaris, completed by utilising a specific mist-netting technique

    Alberdi, Antton, Garin, I., Aizpurua Arrieta, Ostaizka & Aihartza, J., 2013, In: Acta Chiropterologica. 15, 2, p. 451-461 11 p.

    Research output: Contribution to journalReviewpeer-review

  57. 2012
  58. First records of the parti-coloured bat Vespertilio murinus (Chiroptera: Vespertilionidae) in the Pyrenees

    Alberdi, Antton, Aihartza, J., Albero, J. C., Aizpurua, O., López-Baucells, A., Freixas, L., Puig, X., Flaquer, C. & Garin, I., 2012, In: Mammalia. 76, 1, p. 109-111 3 p.

    Research output: Contribution to journalJournal articlepeer-review

  59. The Foraging Ecology of the Mountain Long-Eared Bat Plecotus macrobullaris Revealed with DNA Mini-Barcodes

    Alberdi, Antton, Garin, I., Aizpurua, O. & Aihartza, J., 2012, In: PLoS ONE. 7, 4, 10 p., e35692.

    Research output: Contribution to journalJournal articlepeer-review

ID: 152300361