Bent Petersen

Bent Petersen

Senior Researcher

ORCID: 0000-0002-2472-8317

Publication year:
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1 - 50 out of 68Page size: 50
  1. 2024
  2. Published

    Complexity of avian evolution revealed by family-level genomes

    Stiller, J., Feng, S., Chowdhury, A-A., Rivas-González, I., Duchêne, D. A., Fang, Q., Deng, Y., Kozlov, A., Stamatakis, A., Claramunt, S., Nguyen, J. M. T., Ho, S. Y. W., Faircloth, B. C., Haag, J., Houde, P., Cracraft, J., Balaban, M., Mai, U., Chen, G., Gao, R. & 32 others, Zhou, C., Xie, Y., Huang, Z., Cao, Z., Yan, Z., Ogilvie, H. A., Nakhleh, L., Lindow, Bent Erik Kramer, Morel, B., Fjeldså, Jon, Hosner, Peter Andrew, da Fonseca, R. R., Petersen, Bent, Tobias, J. A., Székely, T., Kennedy, J. D., Reeve, A. H., Liker, A., Stervander, M., Antunes, A., Tietze, D. T., Bertelsen, Mads, Lei, F., Rahbek, Carsten, Graves, G. R., Schierup, M. H., Warnow, T., Braun, E. L., Gilbert, M Thomas P, Jarvis, E. D., Mirarab, S. & KU, thw266, 1 Apr 2024, In: Nature.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Complete genome sequence of plant growth-promoting Bacillus stratosphericus AIMST-CREST02 isolated from bulk soil of a paddy field

    Sivaprakasam, S., Khan, N. A. M. A., Fan, T. Y., Kumarasan, Y., Sicheritz-Pontén, Thomas, Petersen, Bent, Hata, E. M., Vadamalai, G., Parimannan, Sivachandran & Rajandas, Heera, 2024, In: Microbiology resource announcements. 13, 4, 3 p., e0113723.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. 2023
  5. Published

    Historic Sampling of a Vanishing Beast: Population Structure and Diversity in the Black Rhinoceros

    Sánchez-Barreiro, F., Westbury, Binia De Cahsan, Westbury, Michael Vincent, Sun, Xin, Margaryan, Ashot, Fontsere, Claudia, Bruford, M. W., Russo, I. M., Kalthoff, D. C., Sicheritz-Pontén, Thomas, Petersen, Bent, Dalén, L., KU, thw266, Marquès-Bonet, T., Gilbert, M Thomas P & Moodley, Y., 2023, In: Molecular Biology and Evolution. 40, 9, 19 p., msad180.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Large haploblocks underlie rapid adaptation in the invasive weed Ambrosia artemisiifolia

    Battlay, P., Wilson, J., Bieker, V. C., Lee, C., Prapas, D., Petersen, Bent, Craig, S., van Boheemen, L., Scalone, R., de Silva, N. P., Sharma, A., Konstantinović, B., Nurkowski, K. A., Rieseberg, L. H., Connallon, T., Martin, M. D. & Hodgins, K. A., 2023, In: Nature Communications. 14, 15 p., 1717.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Phenotypic Characterization and Comparative Genomic Analysis of Novel Salmonella Bacteriophages Isolated from a Tropical Rainforest

    Mutusamy, P., Singh, K. K. B., Yin, L. S., Petersen, Bent, Sicheritz-Pontén, Thomas, Clokie, M. R. J., Loke, S., Millard, A., Parimannan, Sivachandran & Rajandas, Heera, 2023, In: International Journal of Molecular Sciences. 24, 4, 15 p., 3678.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Population genomics of the island thrush elucidates one of earth's great archipelagic radiations

    Hart Reeve, A., Gower, Graham, Pujolar, J. M., Smith, B. T., Petersen, Bent, Olsson, U., Haryoko, T., Koane, B., Maiah, G., Blom, M. P. K., Ericson, P. G. P., Irestedt, M., Racimo, Fernando & Jønsson, Knud Andreas, 2023, In: Evolution Letters. 7, 1, p. 24-36 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    The formation of the Indo-Pacific montane avifauna

    Reeve, A. H., Kennedy, J. D., Pujolar, J. M., Petersen, Bent, Blom, M. P. K., Alström, P., Haryoko, T., Ericson, P. G. P., Irestedt, M., Nylander, J. A. A. & Jønsson, Knud Andreas, 2023, In: Nature Communications. 14, 15 p., 8215.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. 2022
  11. Published

    NetSurfP-3.0: accurate and fast prediction of protein structural features by protein language models and deep learning

    Høie, M. H., Kiehl, E. N., Petersen, Bent, Nielsen, M., Winther, Ole, Nielsen, H., Hallgren, J. & Marcatili, P., 2022, In: Nucleic Acids Research. 50, W1, p. W510-W515 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    PhageLeads: Rapid Assessment of Phage Therapeutic Suitability Using an Ensemble Machine Learning Approach

    Yukgehnaish, K., Rajandas, Heera, Parimannan, Sivachandran, Manickam, R., Marimuthu, K., Petersen, Bent, Clokie, M. R. J., Millard, A. & Sicheritz-Pontén, Thomas, 2022, In: Viruses. 14, 2, 16 p., 342.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Population genomics of the island thrush elucidates one of earth’s great archipelagic radiations

    Hart Reeve, A., Gower, Graham, Pujolar, J. M., Smith, B. T., Petersen, Bent, Olsson, U., Haryoko, T., Koane, B., Maiah, G., Blom, M. P. K., Ericson, P. G. P., Irestedt, M., Racimo, Fernando & Jønsson, Knud Andreas, 2022, bioRxiv, 46 p.

    Research output: Working paper › Preprint › Research

  14. Published

    The genomic basis of the plant island syndrome in Darwin’s giant daisies

    Cerca, J., Petersen, B., Lazaro-Guevara, J. M., Rivera-Colón, A., Birkeland, S., Vizueta, J., Li, S., Li, Q., Loureiro, J., Kosawang, C., Díaz, P. J., Rivas-Torres, G., Fernández-Mazuecos, M., Vargas, P., McCauley, R. A., Petersen, G., Santos-Bay, L., Wales, N., Catchen, J. M., Machado, D. & 9 others, Nowak, M. D., Suh, A., Sinha, N. R., Nielsen, Lene Rostgaard, Seberg, Ole, Gilbert, M Thomas P, Leebens-Mack, J. H., Rieseberg, L. H. & Martin, M. D., 2022, In: Nature Communications. 13, 13 p., 3729.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    The population genomic legacy of the second plague pandemic

    Gopalakrishnan, S., Ebenesersdóttir, S. S., Lundstrøm, I. K. C., Turner-Walker, G., Moore, K. H. S., Luisi, P., Margaryan, A., Martin, M. D., Ellegaard, M. R., Magnússon, Ó., Sigurðsson, Á., Snorradóttir, S., Magnúsdóttir, D. N., Laffoon, J. E., van Dorp, L., Liu, X., Moltke, I., Ávila-Arcos, M. C., Schraiber, J. G., Rasmussen, S. & 40 others, Juan, D., Gelabert, P., de-Dios, T., Fotaki, Anna Katerina, Iraeta Orbegozo, Miren, Vågene, Åshild Joanne, Denham, S. D., Christophersen, A., Stenøien, H. K., Vieira, Filipe Garrett, Liu, Shanlin, Günther, T., Kivisild, T., Moseng, O. G., Skar, B., Cheung, C., Sandoval-Velasco, Marcela, Wales, N., Schroeder, Hannes, Campos, P. F., Guðmundsdóttir, V. B., Sicheritz-Pontén, Thomas, Petersen, Bent, Halgunset, J., Gilbert, E., Cavalleri, G. L., Hovig, E., Kockum, I., Olsson, T., Alfredsson, L., Hansen, Thomas Folkmann, Werge, Thomas, Willerslev, Eske, Balloux, F., Marques-Bonet, T., Lalueza-Fox, C., Nielsen, Rasmus, Stefánsson, K., Helgason, A. & Gilbert, M Thomas P, 2022, In: Current Biology. 32, 21, p. 4743-4751.e6

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Uncovering the genomic basis of an extraordinary plant invasion

    Bieker, V. C., Battlay, P., Petersen, B., Sun, X., Wilson, J., Brealey, J. C., Bretagnolle, F., Nurkowski, K., Lee, C., Barreiro, F. S., Owens, G. L., Lee, J. Y., Kellner, F. L., van Boheeman, L., Gopalakrishnan, S., Gaudeul, M., Mueller-Schaerer, H., Lommen, S., Karrer, G., Chauvel, B. & 8 others, Sun, Y., Kostantinovic, B., Dalén, L., Poczai, P., Rieseberg, L. H., Gilbert, M Thomas P, Hodgins, K. A. & Martin, M. D., 2022, In: Science Advances. 8, 34, 18 p., eabo5115.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. 2021
  18. Published

    The pangenome of the fungal pathogen Neonectria neomacrospora

    Nielsen, Knud Nor, Sirén, K., Petersen, Bent, Sicheritz-Pontén, Thomas, Gilbert, M Thomas P, Korneliussen, Thorfinn Sand & Hansen, Ole Kim, 12 Mar 2021, 30 p. (bioRxiv).

    Research output: Working paper › Preprint › Research

  19. Published

    An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms

    Alanin, K. W. S., Jørgensen, T. S., Browne, Patrick Denis, Petersen, Bent, Riber, Leise, Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Plasmid. 115, 11 p., 102576.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Complete Genome Sequence of Salmonella enterica Bacteriophage PRF-SP1

    Mutusamy, P., Jothi, S. J., Lee, S. Y., Petersen, Bent, Sicheritz-Pontén, Thomas, Clokie, M. R. J., Loke, S., Millard, A., Parimannan, Sivachandran & Rajandas, Heera, 2021, In: Microbiology resource announcements. 10, 47, 3 p., e00965-21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    From Trees to Clouds: PhageClouds for Fast Comparison of ∼640,000 Phage Genomic Sequences and Host-Centric Visualization Using Genomic Network Graphs

    Rangel Piñeros, Guillermo Andres, Millard, A., Michniewski, S., Scanlan, D., Sirén, K., Reyes, A., Petersen, Bent, Clokie, M. R. J. & Sicheritz-Pontén, Thomas, 2021, In: PHAGE: Therapy, Applications, and Research. 2, 4, p. 194-203

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos

    Sinding, M. S., Ciucani, M. M., Ramos Madrigal, Jazmin, Carmagnini, A., Rasmussen, Jacob Agerbo, Feng, S., Chen, G., Vieira, Filipe Garrett, Mattiangeli, V., Ganjoo, R. K., Larson, G., Sicheritz-Pontén, Thomas, Petersen, Bent, Frantz, L., Gilbert, M Thomas P & Bradley, D. G., 2021, In: iScience. 24, 11, 18 p., 103226.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Rapid discovery of novel prophages using biological feature engineering and machine learning

    Sirén, K., Millard, A., Petersen, Bent, Gilbert, M Thomas P, Clokie, M. R. J. & Sicheritz-Pontén, Thomas, 2021, In: NAR Genomics and Bioinformatics. 3, 1, 10 p., lqaa109.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    SinEx DB 2.0 update 2020: database for eukaryotic single-exon coding sequences

    Jorquera, R., Gonzalez, C., Clausen, P. T. L. C., Petersen, Bent & Holmes, D. S., 2021, In: Database: The Journal of Biological Databases and Curation. 2021, 5 p., baab002.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    The Tetragnatha kauaiensis Genome Sheds Light on the Origins of Genomic Novelty in Spiders

    Cerca, J., Armstrong, E. E., Vizueta Moraga, Joel, Fernández, R., Dimitrov, D., Petersen, Bent, Prost, S., Rozas, J., Petrov, D. & Gillespie, R. G., 2021, In: Genome Biology and Evolution. 13, 12, 17 p., evab262.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. 2020
  27. Published

    A draft genome sequence of the elusive giant squid, Architeuthis dux

    da Fonseca, R. R., Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, Â. M., Barrio-Hernandez, I., Hoving, H-J., Tafur-Jimenez, R., Chu, C., Frazão, B., Petersen, B., Peñaloza, F., Musacchia, F., Alexander, G. C. & 24 others, Osório, H., Winkelmann, I., Simakov, O., Rasmussen, Simon, Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., KU, thw266, Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Pontén, Thomas, Nielsen, Rasmus & Gilbert, M Thomas P, 2020, In: GigaScience. 9, 1, 12 p., giz152.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Arctic-adapted dogs emerged at the Pleistocene-Holocene transition

    Sinding, M. H. S., Gopalakrishnan, S., Ramos-Madrigal, J., de Manuel, M., Pitulko, V. V., Kuderna, L., Feuerborn, T. R., Frantz, L. A. F., Vieira, F. G., Niemann, J., Samaniego Castruita, J. A., Carøe, C., Andersen-Ranberg, E. U., Jordan, P. D., Pavlova, E. Y., Nikolskiy, P. A., Kasparov, A. K., Ivanova, V. V., Willerslev, E., Skoglund, P. & 15 others, Fredholm, Merete, Wennerberg, S. E., Heide-Jørgensen, M. P., Dietz, R., Sonne, C., Meldgaard, Morten, Dalén, L., Larson, G., Petersen, Bent, Sicheritz-Pontén, Thomas, Bachmann, L., Wiig, Ø., Marques-Bonet, T., Hansen, Anders Johannes & Gilbert, M Thomas P, 2020, In: Science (New York, N.Y.). 368, 6498, p. 1495-1499 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Connecting moss lipid droplets to patchoulol biosynthesis

    Peramuna, A., Bae, H., Quiñonero López, C., Fromberg, A., Petersen, Bent & Simonsen, H. T., 2020, In: PLoS ONE. 15, 12, 19 p., e0243620.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Dense sampling of bird diversity increases power of comparative genomics

    Feng, S., Stiller, J., Deng, Y., Armstrong, J., Fang, Q., Hart Reeve, A., Xie, D., Chen, G., Guo, C., Faircloth, B. C., Petersen, B., Wang, Z., Zhou, Q., Diekhans, M., Chen, W., Andreu-Sánchez, S., Margaryan, A., Howard, J. T., Parent, C., Pacheco, G. & 130 others, Sinding, Mikkel Holger Strander, Puetz, Lara Christine, Cavill, Emily Louisa, Ribeiro, Â. M., Eckhart, L., Fjeldså, Jon, Hosner, Peter Andrew, Brumfield, R. T., Christidis, L., Bertelsen, Mads Frost, Sicheritz-Pontén, Thomas, Tietze, D. T., Robertson, B. C., Song, G., Borgia, G., Claramunt, S., Lovette, I. J., Cowen, S. J., Njoroge, P., Dumbacher, J. P., Ryder, O. A., Fuchs, J., Bunce, M., Burt, D. W., Cracraft, J., Meng, G., Hackett, S. J., Ryan, P. G., Jønsson, Knud Andreas, Jamieson, I. G., Rodrigues da Fonseca, Rute Andreia, Braun, E. L., Houde, P., Mirarab, S., Suh, A., Hansson, B., Ponnikas, S., Sigeman, H., Stervander, M., Frandsen, P. B., van der Zwan, H., van der Sluis, R., Visser, C., Balakrishnan, C. N., Clark, A. G., Fitzpatrick, J. W., Bowman, R., Chen, N., Cloutier, A., Sackton, T. B., Edwards, S. V., Foote, D. J., Shakya, S. B., Sheldon, F. H., Vignal, A., Soares, A. E. R., Shapiro, B., González-Solís, J., Ferrer-Obiol, J., Rozas, J., Riutort, M., Tigano, A., Friesen, V., Dalén, L., Urrutia, A. O., Székely, T., Liu, Y., Campana, M. G., Corvelo, A., Fleischer, R. C., Rutherford, K. M., Gemmell, N. J., Dussex, N., Mouritsen, H., Thiele, N., Delmore, K., Liedvogel, M., Franke, A., Hoeppner, M. P., Krone, O., Fudickar, A. M., Milá, B., Ketterson, E. D., Fidler, A. E., Friis, G., Parody-Merino, Á. M., Battley, P. F., Cox, M. P., Lima, N. C. B., Prosdocimi, F., Parchman, T. L., Schlinger, B. A., Loiselle, B. A., Blake, J. G., Lim, H. C., Day, L. B., Fuxjager, M. J., Baldwin, M. W., Braun, M. J., Wirthlin, M., Dikow, R. B., Ryder, T. B., Camenisch, G., Keller, L. F., Dacosta, J. M., Hauber, M. E., Louder, M. I. M., Witt, C. C., McGuire, J. A., Mudge, J., Megna, L. C., Carling, M. D., Wang, B., Taylor, S. A., Del-Rio, G., Aleixo, A., Vasconcelos, A. T. R., Mello, C. V., Weir, J. T., Haussler, D., Li, Q., Yang, H., Wang, J., Lei, F., Rahbek, Carsten, Gilbert, M Thomas P, Graves, G. R., Jarvis, E. D., Paten, B. & KU, thw266, 2020, In: Nature. 587, 7833, p. 252-257

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet

    Gelabert, P., Sandoval-Velasco, M., Serres, A., de Manuel, M., Renom, P., Margaryan, A., Stiller, J., de-Dios, T., Fang, Q., Feng, S., Mañosa, S., Pacheco, G., Ferrando-Bernal, M., Shi, G., Hao, F., Chen, X., Petersen, B., Olsen, R-A., Navarro, A., Deng, Y. & 6 others, Dalén, L., Marquès-Bonet, T., KU, thw266, Antunes, A., Gilbert, M Thomas P & Lalueza-Fox, C., 2020, In: Current Biology. 30, 1, p. 108-114, e1-e5

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Genomes of Pleistocene Siberian Wolves Uncover Multiple Extinct Wolf Lineages

    Ramos-Madrigal, J., Sinding, M-H. S., Carøe, C., Mak, S. S. T., Niemann, J., Samaniego Castruita, J. A., Fedorov, S., Kandyba, A., Germonpré, M., Bocherens, H., Feuerborn, T. R., Pitulko, V. V., Pavlova, E. Y., Nikolskiy, P. A., Kasparov, A. K., Ivanova, V. V., Larson, G., Frantz, L. A. F., Willerslev, E., Meldgaard, M. & 7 others, Petersen, Bent, Sicheritz-Pontén, Thomas, Bachmann, L., Wiig, Ø., Hansen, Anders Johannes, Gilbert, M Thomas P & Gopalakrishnan, Shyam, 2020, In: Current biology : CB. 31, p. 198-206

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    The tuatara genome reveals ancient features of amniote evolution

    Gemmell, N. J., Rutherford, K., Prost, S., Tollis, M., Winter, D., Macey, J. R., Adelson, D. L., Suh, A., Bertozzi, T., Grau, J. H., Organ, C., Gardner, P. P., Muffato, M., Patricio, M., Billis, K., Martin, F. J., Flicek, P., Petersen, B., Kang, L., Michalak, P. & 31 others, Buckley, T. R., Wilson, M., Cheng, Y., Miller, H., Schott, R. K., Jordan, M. D., Newcomb, R. D., Arroyo, J. I., Valenzuela, N., Hore, T. A., Renart, J., Peona, V., Peart, C. R., Warmuth, V. M., Zeng, L., Kortschak, R. D., Raison, J. M., Zapata, V. V., Wu, Z., Santesmasses, D., Mariotti, M., Guigo, R., Rupp, S. M., Twort, V. G., Dussex, N., Taylor, H., Abe, H., Bond, D. M., Paterson, J. M., Mulcahy, D. G. & Ngatiwai Trust Board, N. T. B., 2020, In: Nature. 584, p. 403–409, +19 26 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. 2019
  35. Published

    Comparative analyses identify genomic features potentially involved in the evolution of birds-of-paradise

    Prost, S., Armstrong, E. E., Nylander, J., Thomas, G. W. C., Suh, A., Petersen, Bent, Dalen, L., Benz, B. W., Blom, M. P. K., Palkopoulou, E., Ericson, P. G. P. & Irestedt, M., 2019, In: GigaScience. 8, 5, 12 p., giz003.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Genomic analyses reveal an absence of contemporary introgressive admixture between fin whales and blue whales, despite known hybrids

    Westbury, Michael Vincent, Petersen, Bent & Lorenzen, Eline, 2019, In: PLoS ONE. 14, 9, 13 p., e0222004.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

    Hendriksen, R. S., Munk, P., Njage, P., van Bunnik, B., McNally, L., Lukjancenko, O., Röder, T., Nieuwenhuijse, D., Pedersen, S. K., Kjeldgaard, J., Kaas, R. S., Clausen, P. T. L. C., Vogt, J. K., Leekitcharoenphon, P., van de Schans, M. G. M., Zuidema, T., de Roda Husman, A. M., Rasmussen, S., Petersen, B., Bego, A. & 108 others, Rees, C., Cassar, S., Coventry, K., Collignon, P., Allerberger, F., Rahube, T. O., Oliveira, G., Ivanov, I., Vuthy, Y., Sopheak, T., Yost, C. K., Ke, C., Zheng, H., Baisheng, L., Jiao, X., Donado-Godoy, P., Coulibaly, K. J., Jergović, M., Hrenovic, J., Karpíšková, R., Villacis, J. E., Legesse, M., Eguale, T., Heikinheimo, A., Malania, L., Nitsche, A., Brinkmann, A., Saba, C. K. S., Kocsis, B., Solymosi, N., Thorsteinsdottir, T. R., Hatha, A. M., Alebouyeh, M., Morris, D., Cormican, M., O’Connor, L., Moran-Gilad, J., Alba, P., Battisti, A., Shakenova, Z., Kiiyukia, C., Ng’eno, E., Raka, L., Avsejenko, J., Bērziņš, A., Bartkevics, V., Penny, C., Rajandas, H., Parimannan, S., Haber, M. V., Pal, P., Jeunen, G. J., Gemmell, N., Fashae, K., Holmstad, R., Hasan, R., Shakoor, S., Rojas, M. L. Z., Wasyl, D., Bosevska, G., Kochubovski, M., Radu, C., Gassama, A., Radosavljevic, V., Wuertz, S., Zuniga-Montanez, R., Tay, M. Y. F., Gavačová, D., Pastuchova, K., Truska, P., Trkov, M., Esterhuyse, K., Keddy, K., Cerdà-Cuéllar, M., Pathirage, S., Norrgren, L., Örn, S., Larsson, D. G. J., Heijden, T. V. D., Kumburu, H. H., Sanneh, B., Bidjada, P., Njanpop-Lafourcade, B. M., Nikiema-Pessinaba, S. C., Levent, B., Meschke, J. S., Beck, N. K., Van, C. D., Phuc, N. D., Tran, D. M. N., Kwenda, G., Tabo, D. A., Wester, A. L., Cuadros-Orellana, S., Amid, C., Cochrane, G., Sicheritz-Pontén, Thomas, Schmitt, H., Alvarez, J. R. M., Aidara-Kane, A., Pamp, S. J., Lund, O., Hald, T., Woolhouse, M., Koopmans, M. P., Vigre, H., Petersen, T. N. & Aarestrup, F. M., 2019, In: Nature Communications. 10, 1, 12 p., 1124.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements

    Rey de la Iglesia, Alba, Gopalakrishan, S., Carøe, C., Alquezar-Planas, D. E., Nielsen, A. A., Röder, T., Pedersen, Lene Bruhn, Næsborg-Nielsen, C., Sinding, Mikkel Holger Strander, Rath, Martin Fredensborg, Li, Z., Petersen, Bent, Gilbert, M Thomas P, Bunce, M., Mourier, T. & Hansen, Anders Johannes, 2019, In: Molecular Ecology Resources. 19, 2, p. 512-525 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Narwhal Genome Reveals Long-Term Low Genetic Diversity despite Current Large Abundance Size

    Westbury, Michael Vincent, Petersen, Bent, Garde, E., Heide-Jørgensen, M. P. & Lorenzen, Eline, 2019, In: iScience. 15, p. 592-599

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    NetSurfP-2.0: improved prediction of protein structural features by integrated deep learning

    Klausen, M. S., Jespersen, M. C., Nielsen, H., Jensen, K. K., Jurtz, V. I., Sønderby, C. K., Sommer, M. O. A., Winther, Ole, Nielsen, M., Petersen, Bent & Marcatili, P., 2019, In: Proteins: Structure, Function and Bioinformatics. 87, 6, p. 520-527

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Palaeogenomic insights into the origins of French grapevine diversity

    Ramos Madrigal, Jazmin, Runge, Anne Kathrine Wiborg, Bouby, L., Lacombe, T., Samaniego Castruita, J. A., Adam-Blondon, A., Figueiral, I., Hallavant, C., Schaal, C., Töpfer, R., Petersen, Bent, Sicheritz-Pontén, T., This, P., Bacilieri, R., Gilbert, M Thomas P & Wales, N., 2019, In: Nature Plants. 5, 6, p. 595-603 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    The Genome and mRNA Transcriptome of the Cosmopolitan Calanoid Copepod Acartia tonsa Dana Improve the Understanding of Copepod Genome Size Evolution

    Jørgensen, T. S., Petersen, Bent, Petersen, H. C. B., Browne, Patrick Denis, Prost, S., Stillman, J. H., Hansen, Lars Hestbjerg & Hansen, B. W., 2019, In: Genome Biology and Evolution. 11, 5, p. 1440-1450

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    The Whole Genome Sequence and mRNA Transcriptome of the Tropical Cyclopoid Copepod Apocyclops royi

    Jorgensen, T. S., Nielsen, B. L. H., Petersen, Bent, Browne, Patrick Denis, Hansen, B. W. & Hansen, Lars Hestbjerg, 2019, In: G3: Genes, Genomes, Genetics (Bethesda). 9, 5, p. 1295-1302

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. 2018
  45. Published

    Antibodies to intercellular adhesion molecule 1-binding Plasmodium falciparum erythrocyte membrane protein 1-DBLβ are biomarkers of protective immunity to malaria in a cohort of young children from Papua New Guinea

    Tessema, S. K., Utama, D., Chesnokov, O., Hodder, A. N., Lin, C. S., Harrison, G. L. A., Jespersen, Jakob Schmidt, Petersen, Bent, Tavul, L., Siba, P., Kwiatkowski, D., Lavstsen, Thomas, Hansen, D. S., Oleinikov, A. V., Mueller, I. & Barry, A. E., 1 Aug 2018, In: Infection and Immunity. 86, 8, p. 1-14 14 p., e00485-17.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Genome analyses show strong selection on coloration, morphological and behavioral phenotypes in birds-of-paradise

    Prost, S., Armstrong, E. E., Nylander, J., Thomas, G. W. C., Suh, A., Petersen, Bent, Dalen, L., Benz, B. W., Blom, M. P. K., Palkopoulou, E., Ericson, P. G. P. & Irestedt, M., 16 May 2018, (Accepted/In press) In: bioRxiv.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    "Out of the Can": A Draft Genome Assembly, Liver Transcriptome, and Nutrigenomics of the European Sardine, Sardina pilchardus

    Machado, A. M., Tørresen, O. K., Kabeya, N., Couto, A., Petersen, Bent, Felicio, M., Campos, P. F., Fonseca, E., Bandarra, N., Lopes-Marques, M., Ferraz, R., Ruivo, R., Fonseca, M. M., Jentoft, S., Monroig, Ó., Rodrigues da Fonseca, Rute Andreia & Castro, L. F. C., 2018, In: Genes. 9, 10, p. 1-13 485.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Accurate genotyping across variant classes and lengths using variant graphs

    Sibbesen, Jonas Andreas, Maretty, L., Krogh, Anders, Petersen, Bent, Sibbesen, Jonas Andreas, Liu, S., Have, C. T., Bork-Jensen, J., Guo, X., Hansen, Torben, Krogh, Anders, Sørensen, Thorkild I.A., Pedersen, Oluf Borbye, Wang, J. & Brunak, Søren, 2018, In: Nature Genetics. 50, p. 1054-1059 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios

    Matey-Hernandez, M. L., Danish Pan Genome Consortium, D. P. G. C., Brunak, Søren, Izarzugaza, J. M. G., Sørensen, L. M., Petersen, Bent, Sibbesen, Jonas Andreas, Liu, S., Belling, K. G., Have, C. T., Bork-Jensen, J., Sun, J., Hansen, Torben, Krogh, Anders, Sørensen, Thorkild I.A., Pedersen, Oluf Borbye, Wang, J., Eiberg, Hans Rudolf Lytchoff & Kristiansen, Karsten, 2018, In: BMC Bioinformatics. 19, p. 1-12 239.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Improved de novo genomic assembly for the domestic donkey

    Renaud, Gabriel, Petersen, Bent, Seguin-orlando, A., Bertelsen, Mads Frost, Waller, A., Newton, R., Paillot, R., Bryant, N., Vaudin, M., Librado, P. & Orlando, L., 2018, In: Science Advances. 4, 4, eaaq0392.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Improved ontology for eukaryotic single-exon coding sequences in biological databases

    Jorquera, R., González, C., Clausen, P. T. L. C., Petersen, Bent & Holmes, D. S., 2018, In: Database: The Journal of Biological Databases and Curation. 2018, 6 p., bay089.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Interspecific Gene Flow Shaped the Evolution of the Genus Canis

    Gopalakrishnan, S., Sinding, M. H. S., Ramos-Madrigal, J., Niemann, J., Samaniego Castruita, J. A., Vieira, F. G., Carøe, C., Montero, M. D. M., Kuderna, L., Serres, A., González-Basallote, V. M., Liu, Y. H., Wang, G. D., Marques-Bonet, T., Mirarab, S., Fernandes, C., Gaubert, P., Koepfli, K. P., Budd, J., Rueness, E. K. & 7 others, Heide-Jørgensen, M. P., Petersen, Bent, Sicheritz-Ponten, T., Bachmann, L., Wiig, Ø., Hansen, Anders Johannes & Gilbert, M. T. P., 2018, In: Current Biology. 28, 21, p. 3441-3449

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Population genomics of grey wolves and wolf-like canids in North America

    Sinding, Mikkel Holger Strander, Gopalakrishan, S., Vieira, Filipe Garrett, Samaniego Castruita, J. A., Raundrup, K., Heide-Jørgensen, M. P., Meldgaard, Morten, Petersen, Bent, Sicheritz-Ponten, T., Mikkelsen, J. B., Marquard-Petersen, U., Dietz, R., Sonne, C., Dalén, L., Bachmann, L., Wiig, Ø., Hansen, Anders Johannes & Gilbert, M Thomas P, 2018, In: PLOS Genetics. 14, 11, 23 p., e1007745.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. 2017
  55. Published

    Assembly and analysis of 100 full MHC haplotypes from the Danish population

    Jensen, J. M., Villesen, P., Friborg, R. M., Mailund, T., Besenbacher, S., Sørensen, L. M., Petersen, B., Sibbesen, J. A., Liu, S., Skov, L., Belling, K. G., Have, C. T., Izarzugaza, J. M. G., Grosjean, M., Bork-Jensen, J., Grove, J., Als, T. D., Huang, S., Chang, Y., Xu, R. & 39 others, Ye, W., Rao, J., Guo, X., Sun, J., Cao, H., Ye, C., Beusekom, J. V., Espeseth, T., Flindt, E., Halager, A. E., Hellard, S. L., Hultman, C. M., Lescai, F., Li, S., Lund, O., Løngren, P., Matey-Hernandez, M. L., Mors, O., Pedersen, C. N. S., Sicheritz-Pontén, T., Sullivan, P., Syed, A., Westergaard, D., Yadav, R., Li, N., Xu, X., Hansen, Torben, Bolund, L., Krogh, Anders, Sørensen, Thorkild I.A., Pedersen, Oluf Borbye, Gupta, R., Rasmussen, Simon, Børglum, A. D., Wang, J., Eiberg, Hans Rudolf Lytchoff, Kristiansen, Karsten, Brunak, Søren & Schierup, M. H., Sep 2017, In: Genome Research. 27, 9, p. 1597-1607 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

    Mak, Sarah Siu Tze, Gopalakrishnan, Shyam, Carøe, C., Geng, C., Liu, Shanlin, Sinding, Mikkel Holger Strander, Kuderna, L. F. K., Zhang, W., Fu, S., Vieira, Filipe Garrett, Germonpré, M., Bocherens, H., Fedorov, S., Petersen, Bent, Sicheritz-Pontén, T., Marques-Bonet, T., KU, thw266, Jiang, H. & Gilbert, M Thomas P, Aug 2017, In: GigaScience. 6, 8, p. 1–13 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion

    Skov, L., Schierup, M. H., Danish Pan Genome Consortium, D. P. G. C., Sørensen, L. M., Petersen, Bent, Sibbesen, Jonas Andreas, Liu, S., Belling, K. G., Have, C. T., Bork-Jensen, J., Hansen, Torben, Krogh, Anders, Sørensen, Thorkild I.A., Pedersen, Oluf Borbye, Rasmussen, Simon, Kristiansen, Karsten & Brunak, Søren, 2017, In: PLOS Genetics. 13, 8, p. e1006834

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Complete mitochondrial genome of the Oriental Hornet, Vespa orientalis F. (Hymenoptera: Vespidae)

    Haddad, N. J., Al-Nakeeb, K. A. A., Petersen, Bent, Dalén, L., Blom, N. & Sicheritz-Pontén, Thomas, 2017, In: Mitochondrial DNA Part B: Resources. 2, 1, p. 139-140 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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