Shanlin Liu

Shanlin Liu

Guest Researcher


  1. 2024
  2. Published

    Population genomics of the muskox' resilience in the near absence of genetic variation

    Pečnerová, P., Lord, E., Garcia-Erill, G., Hanghøj, K., Rasmussen, M. S., Meisner, J., Liu, X., van der Valk, T., Santander, C. G., Quinn, L., Lin, L., Liu, S., Carøe, C., Dalerum, F., Götherström, A., Måsviken, J., Vartanyan, S., Raundrup, K., Al-Chaer, A., Rasmussen, L. & 11 others, Hvilsom, C., Heide-Jørgensen, M. P., Sinding, Mikkel Holger Strander, Aastrup, P., Van Coeverden de Groot, P. J., Schmidt, N. M., Albrechtsen, Anders, Dalén, L., Heller, Rasmus, Moltke, Ida & Siegismund, Hans Redlef, 2024, In: Molecular Ecology. 33, 2, 25 p.

    Research output: Contribution to journalJournal articlepeer-review

  3. 2022
  4. Published

    The population genomic legacy of the second plague pandemic

    Gopalakrishnan, S., Ebenesersdóttir, S. S., Lundstrøm, I. K. C., Turner-Walker, G., Moore, K. H. S., Luisi, P., Margaryan, A., Martin, M. D., Ellegaard, M. R., Magnússon, Ó., Sigurðsson, Á., Snorradóttir, S., Magnúsdóttir, D. N., Laffoon, J. E., van Dorp, L., Liu, X., Moltke, I., Ávila-Arcos, M. C., Schraiber, J. G., Rasmussen, S. & 40 others, Juan, D., Gelabert, P., de-Dios, T., Fotaki, Anna Katerina, Iraeta Orbegozo, Miren, Vågene, Åshild Joanne, Denham, S. D., Christophersen, A., Stenøien, H. K., Vieira, Filipe Garrett, Liu, Shanlin, Günther, T., Kivisild, T., Moseng, O. G., Skar, B., Cheung, C., Sandoval-Velasco, Marcela, Wales, N., Schroeder, Hannes, Campos, P. F., Guðmundsdóttir, V. B., Sicheritz-Pontén, Thomas, Petersen, Bent, Halgunset, J., Gilbert, E., Cavalleri, G. L., Hovig, E., Kockum, I., Olsson, T., Alfredsson, L., Hansen, Thomas Folkmann, Werge, Thomas, Willerslev, Eske, Balloux, F., Marques-Bonet, T., Lalueza-Fox, C., Nielsen, Rasmus, Stefánsson, K., Helgason, A. & Gilbert, M Thomas P, 2022, In: Current Biology. 32, 21, p. 4743-4751.e6

    Research output: Contribution to journalJournal articlepeer-review

  5. 2021
  6. Published

    Ancient and modern genomes unravel the evolutionary history of the rhinoceros family

    Liu, S., Westbury, M. V., Dussex, N., Mitchell, K. J., Sinding, M. H. S., Heintzman, P. D., Duchêne, D. A., Kapp, J. D., von Seth, J., Heiniger, H., Sánchez-Barreiro, F., Margaryan, A., André-Olsen, R., De Cahsan, B., Meng, G., Yang, C., Chen, L., van der Valk, T., Moodley, Y., Rookmaaker, K. & 19 others, Bruford, M. W., Ryder, O., Steiner, C., Sonsbeek, L. G. R. B., Vartanyan, S., Guo, C., Cooper, A., Kosintsev, P., Kirillova, I., Lister, A. M., Marques-Bonet, T., Gopalakrishnan, Shyam, Dunn, Rob, Lorenzen, Eline, Shapiro, B., KU, thw266, Antoine, P. O., Dalén, L. & Gilbert, M Thomas P, 2021, In: Cell. 184, 19, p. 4874-4885.e16

    Research output: Contribution to journalJournal articlepeer-review

  7. Published

    Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations

    von Seth, J., Dussex, N., Diez-del-Molino, D., van der Valk, T., Kutschera, V. E., Kierczak, M., Steiner, C. C., Liu, S., Gilbert, M. T. P., Sinding, M-H. S., Prost, S., Guschanski, K., Nathan, S. K. S. S., Brace, S., Chan, Y. L., Wheat, C. W., Skoglund, P., Ryder, O. A., Goossens, B., Gotherstrom, A. & 1 others, Dalen, L., 2021, In: Nature Communications. 12, 1, 11 p., 2393.

    Research output: Contribution to journalJournal articlepeer-review

  8. 2020
  9. Published

    Historical isolation facilitates species radiation by sexual selection: Insights from Chorthippus grasshoppers

    Nolen, Z. J., Yildirim, B., Irisarri, I., Liu, Shanlin, Groot Crego, C., Amby, Daniel Buchvaldt, Mayer, F., Gilbert, M Thomas P & Pereira, R. J., 2020, In: Molecular Ecology. 29, 24, p. 4985-5002

    Research output: Contribution to journalJournal articlepeer-review

  10. Published

    Phylogeny of Neotropical Seirinae (Collembola, Entomobryidae) based on mitochondrial genomes

    Godeiro, N. N., Antunes Pacheco, George, Liu, Shanlin, Gioia Cipola, N., Berbel-Filho, W. M., Zhang, F., Gilbert, M Thomas P & Bellini, B. C., 2020, In: Zoologica Scripta. 49, 3, p. 329-339

    Research output: Contribution to journalJournal articlepeer-review

  11. Published

    Recent mitochondrial lineage extinction in the critically endangered Javan rhinoceros

    Margaryan, Ashot, Sinding, Mikkel Holger Strander, Liu, Shanlin, Vieira, Filipe Garrett, Chan, Y. L., Nathan, S. K. S. S., Moodley, Y., Bruford, M. W. & Gilbert, M Thomas P, 2020, In: Zoological Journal of the Linnean Society. 190, 1, p. 372-383 12 p.

    Research output: Contribution to journalJournal articlepeer-review

  12. Published

    The evolutionary history of extinct and living lions

    de Manuel, M., Barnett, R., Sandoval-Velasco, M., Yamaguchi, N., Vieira, F. G., Mendoza, M. L. Z., Liu, S., Martin, M. D., Sinding, M-H. S., Mak, S. S. T., Caroe, C., Liu, S., Guo, C., Zheng, J., Zazula, G., Baryshnikov, G., Eizirik, E., Koepfli, K-P., Johnson, W. E., Antunes, A. & 9 others, Sicheritz-Pontén, Thomas, Gopalakrishnan, Shyam, Larson, G., Yang, H., O'Brien, S. J., Hansen, Anders Johannes, KU, thw266, Marques-Bonet, T. & Gilbert, M Thomas P, 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 20, p. 10927-10934 8 p.

    Research output: Contribution to journalJournal articlepeer-review

  13. 2019
  14. Published

    Evolutionary history of Polyneoptera and its implications for our understanding of early winged insects

    Wipfler, B., Letsch, H., Frandsen, P. B., Kapli, P., Mayer, C., Bartel, D., Buckley, T. R., Donath, A., Edgerly-Rooks, J. S., Fujita, M., Liu, S., Machida, R., Mashimo, Y., Misof, B., Niehuis, O., Peters, R. S., Petersen, M., Podsiadlowski, L., Schuette, K., Shimizu, S. & 5 others, Uchifune, T., Wilbrandt, J., Yan, E., Zhou, X. & Simon, S., 19 Feb 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 8, p. 3024-3029

    Research output: Contribution to journalJournal articlepeer-review

  15. Published

    Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny

    Cappellini, E., Welker, F., Pandolfi, L., Ramos-Madrigal, J., Samodova, D., Rüther, P. L., Fotakis, A. K., Lyon, D., Moreno-Mayar, J. V., Bukhsianidze, M., Rakownikow Jersie-Christensen, R., Mackie, M., Ginolhac, A., Ferring, R., Tappen, M., Palkopoulou, E., Dickinson, M. R., Stafford, T. W., Chan, Y. L., Götherström, A. & 23 others, Nathan, S. K. S. S., Heintzman, P. D., Kapp, J. D., Kirillova, I., Moodley, Y., Agusti, J., Kahlke, R. D., Kiladze, G., Martínez-Navarro, B., Liu, Shanlin, Sandoval-Velasco, Marcela, Sinding, Mikkel Holger Strander, Kelstrup, C. D., Allentoft, Morten Erik, Orlando, L., Penkman, K., Shapiro, B., Rook, L., Dalén, L., Gilbert, M Thomas P, Olsen, Jesper Velgaard, Lordkipanidze, D. & Willerslev, Eske, 2019, In: Nature. 574, 7776, p. 103-107

    Research output: Contribution to journalJournal articlepeer-review

  16. Published

    The discovery of Neotropical Lepidosira (Collembola, Entomobryidae) and its systematic position

    Nunes, R. C., Godeiro, N. N., Antunes Pacheco, George, Liu, Shanlin, Gilbert, M Thomas P, Alvarez-Valin, F., Zhang, F. & Bellini, B. C., 2019, In: Zoologica Scripta. 48, 6, p. 783-800

    Research output: Contribution to journalJournal articlepeer-review

  17. 2018
  18. Published

    Performance of amplicon and shotgun sequencing for accurate biomass estimation in invertebrate community samples

    Bista, I., Carvalho, G. R., Tang, M., Walsh, K., Zhou, X., Hajibabaei, M., Shokralla, S., Seymour, M., Bradley, D., Liu, Shanlin, Christmas, M. & Creer, S., 1 Sep 2018, In: Molecular Ecology Resources. 18, 5, p. 1020-1034

    Research output: Contribution to journalJournal articlepeer-review

  19. Published

    Characterization of viral RNA splicing using whole-transcriptome datasets from host species

    Zhou, C., Liu, Shanlin, Song, W., Luo, S., Meng, G., Yang, C., Yang, H., Ma, J., Wang, L., Gao, S., Wang, J., Yang, H., Zhao, Y., Wang, H. & Zhou, X., 2018, In: Scientific Reports. 8, 14 p., 3273.

    Research output: Contribution to journalJournal articlepeer-review

  20. Published

    Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq

    Kodama, M., Brinch-pedersen, H., Sharma, S., Holme, I. B., Joernsgaard, B., Dzhanfezova, T., Amby, Daniel Buchvaldt, Vieira, Filipe Garrett, Liu, Shanlin & Gilbert, M. T. P., 2018, In: BMC Genomics. 19, 13 p., 811.

    Research output: Contribution to journalJournal articlepeer-review

  21. Published

    New data, same story: phylogenomics does not support Syrphoidea (Diptera: Syrphidae, Pipunculidae)

    Pauli, T., Burt, T. O., Meusemann, K., Bayless, K., Donath, A., Podsiadlowski, L., Mayer, C., Kozlov, A., Vasilikopoulos, A., Liu, Shanlin, Zhou, X., Yeates, D., Misof, B., Peters, R. S. & Mengual, X., 2018, In: Systematic Entomology. 43, 3, p. 447-459 13 p.

    Research output: Contribution to journalJournal articlepeer-review

  22. Published

    The evolutionary genomic history of the saola

    Liu, Shanlin, 2018, Natural History Museum of Denmark, Faculty of Science, University of Copenhagen.

    Research output: Book/ReportPh.D. thesis

  23. Published

    Transcriptome sequence-based phylogeny of chalcidoid wasps (Hymenoptera: Chalcidoidea) reveals a history of rapid radiations, convergence, and evolutionary success

    Peters, R. S., Niehuis, O., Gunkel, S., Bläser, M., Mayer, C., Podsiadlowski, L., Kozlov, A., Donath, A., van Noort, S., Liu, Shanlin, Zhou, X., Misof, B., Heraty, J. & Krogmann, L., 2018, In: Molecular Phylogenetics and Evolution. 120, p. 286-296 11 p.

    Research output: Contribution to journalJournal articlepeer-review

  24. 2017
  25. Published

    The molecular evolutionary dynamics of oxidative phosphorylation (OXPHOS) genes in Hymenoptera

    Li, Y., Zhang, R., Liu, Shanlin, Donath, A., Peters, R. S., Ware, J., Misof, B., Niehuis, O., Pfrender, M. E. & Zhou, X., 28 Dec 2017, In: B M C Evolutionary Biology. 17, 12 p., 269.

    Research output: Contribution to journalJournal articlepeer-review

  26. Published

    Filling reference gaps via assembling DNA barcodes using high-throughput sequencing-moving toward barcoding the world

    Liu, Shanlin, Yang, C., Zhou, C. & Zhou, X., Dec 2017, In: GigaScience. 6, 12, 8 p.

    Research output: Contribution to journalJournal articlepeer-review

  27. Published

    Transcriptome and target DNA enrichment sequence data provide new insights into the phylogeny of vespid wasps (Hymenoptera: Aculeata: Vespidae)

    Bank, S., Sann, M., Mayer, C., Meusemann, K., Donath, A., Podsiadlowski, L., Kozlov, A., Petersen, M., Krogmann, L., Meier, R., Rosa, P., Schmitt, T., Wurdack, M., Liu, Shanlin, Zhou, X., Misof, B., Peters, R. S. & Niehuis, O., Nov 2017, In: Molecular Phylogenetics and Evolution. 116, p. 213-226 14 p.

    Research output: Contribution to journalJournal articlepeer-review

  28. Published

    Positive and relaxed selection associated with flight evolution and loss in insect transcriptomes

    Mitterboeck, T. F., Liu, Shanlin, Adamowicz, S. J., Fu, J., Zhang, R., Song, W., Meusemann, K. & Zhou, X., Oct 2017, In: GigaScience. 6, 10, p. 1-14 14 p.

    Research output: Contribution to journalJournal articlepeer-review

  29. Published

    An expanded mammal mitogenome dataset from Southeast Asia

    Mohd Salleh, F. B., Ramos Madrigal, Jazmin, Peñaloza, F., Liu, Shanlin, Sinding, Mikkel Holger Strander, Patel, R. P., Martins, R., Lenz, D., Fickel, J., Roos, C., Shamsir, M. S., Azman, M. S., Lim, B. K., Rossiter, S. J., Wilting, A. & Gilbert, M Thomas P, Aug 2017, In: GigaScience. 6, 8, p. 1–8 8 p.

    Research output: Contribution to journalJournal articlepeer-review

  30. Published

    Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

    Mak, Sarah Siu Tze, Gopalakrishnan, Shyam, Carøe, C., Geng, C., Liu, Shanlin, Sinding, Mikkel Holger Strander, Kuderna, L. F. K., Zhang, W., Fu, S., Vieira, Filipe Garrett, Germonpré, M., Bocherens, H., Fedorov, S., Petersen, Bent, Sicheritz-Pontén, T., Marques-Bonet, T., KU, thw266, Jiang, H. & Gilbert, M Thomas P, Aug 2017, In: GigaScience. 6, 8, p. 1–13 13 p.

    Research output: Contribution to journalJournal articlepeer-review

  31. Published

    Evolutionary history of the Hymenoptera

    Peters, R. S., Krogmann, L., Mayer, C., Donath, A., Gunkel, S., Meusemann, K., Kozlov, A., Podsiadlowski, L., Petersen, M., Lanfear, R., Diez, P. A., Heraty, J., Kjer, K. M., Klopfstein, S., Meier, R., Polidori, C., Schmitt, T., Liu, S., Zhou, X., Wappler, T. & 3 others, Rust, J., Misof, B. & Niehuis, O., 3 Apr 2017, In: Current Biology. 27, 7, p. 1013-1018 6 p.

    Research output: Contribution to journalJournal articlepeer-review

  32. 2016
  33. Published

    Transcriptomic data from panarthropods shed new light on the evolution of insulator binding proteins in insects

    Pauli, T., Vedder, L., Dowling, D., Petersen, M., Meusemann, K., Donath, A., Peters, R. S., Podsiadlowski, L., Mayer, C., Liu, Shanlin, Zhou, X., Heger, P., Wiehe, T., Hering, L., Mayer, G., Misof, B. & Niehuis, O., 3 Nov 2016, In: BMC Genomics. 17, 10 p., 861.

    Research output: Contribution to journalJournal articlepeer-review

  34. Published

    Mitochondrial capture enriches mito-DNA 100 fold, enabling PCR-free mitogenomics biodiversity analysis

    Liu, Shanlin, Wang, X., Xie, L., Tan, M., Li, Z., Su, X., Zhang, H., Misof, B., Kjer, K. M., Tang, M., Niehuis, O., Jiang, H. & Zhou, X., 2016, In: Molecular Ecology Resources. 16, 2, p. 470-479 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  35. Published

    Phylogenetic origin and diversification of RNAi pathway genes in insects

    Dowling, D., Pauli, T., Donath, A., Meusemann, K., Podsiadlowski, L., Petersen, M., Peters, R. S., Mayer, C., Liu, Shanlin, Zhou, X., Misof, B. & Niehuis, O., 2016, In: Genome Biology and Evolution. 8, 12, p. 3784-3793 10 p.

    Research output: Contribution to journalJournal articlepeer-review

ID: 143259847