Shanlin Liu
Guest Researcher
Section for Hologenomics
Øster Farimagsgade 5
1353 København K
- 2024
- Published
Population genomics of the muskox' resilience in the near absence of genetic variation
Pečnerová, P., Lord, E., Garcia-Erill, G., Hanghøj, K., Rasmussen, M. S., Meisner, J., Liu, X., van der Valk, T., Santander, C. G., Quinn, L., Lin, L., Liu, S., Carøe, C., Dalerum, F., Götherström, A., Måsviken, J., Vartanyan, S., Raundrup, K., Al-Chaer, A., Rasmussen, L. & 11 others, , 2024, In: Molecular Ecology. 33, 2, 25 p.Research output: Contribution to journal › Journal article › peer-review
- 2022
- Published
The population genomic legacy of the second plague pandemic
Gopalakrishnan, S., Ebenesersdóttir, S. S., Lundstrøm, I. K. C., Turner-Walker, G., Moore, K. H. S., Luisi, P., Margaryan, A., Martin, M. D., Ellegaard, M. R., Magnússon, Ó., Sigurðsson, Á., Snorradóttir, S., Magnúsdóttir, D. N., Laffoon, J. E., van Dorp, L., Liu, X., Moltke, I., Ávila-Arcos, M. C., Schraiber, J. G., Rasmussen, S. & 40 others, , 2022, In: Current Biology. 32, 21, p. 4743-4751.e6Research output: Contribution to journal › Journal article › peer-review
- 2021
- Published
Ancient and modern genomes unravel the evolutionary history of the rhinoceros family
Liu, S., Westbury, M. V., Dussex, N., Mitchell, K. J., Sinding, M. H. S., Heintzman, P. D., Duchêne, D. A., Kapp, J. D., von Seth, J., Heiniger, H., Sánchez-Barreiro, F., Margaryan, A., André-Olsen, R., De Cahsan, B., Meng, G., Yang, C., Chen, L., van der Valk, T., Moodley, Y., Rookmaaker, K. & 19 others, , 2021, In: Cell. 184, 19, p. 4874-4885.e16Research output: Contribution to journal › Journal article › peer-review
- Published
Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations
von Seth, J., Dussex, N., Diez-del-Molino, D., van der Valk, T., Kutschera, V. E., Kierczak, M., Steiner, C. C., Liu, S., Gilbert, M. T. P., Sinding, M-H. S., Prost, S., Guschanski, K., Nathan, S. K. S. S., Brace, S., Chan, Y. L., Wheat, C. W., Skoglund, P., Ryder, O. A., Goossens, B., Gotherstrom, A. & 1 others, , 2021, In: Nature Communications. 12, 1, 11 p., 2393.Research output: Contribution to journal › Journal article › peer-review
- 2020
- Published
Historical isolation facilitates species radiation by sexual selection: Insights from Chorthippus grasshoppers
Nolen, Z. J., Yildirim, B., Irisarri, I., Liu, Shanlin, Groot Crego, C., Amby, Daniel Buchvaldt, Mayer, F., Gilbert, M Thomas P & Pereira, R. J., 2020, In: Molecular Ecology. 29, 24, p. 4985-5002Research output: Contribution to journal › Journal article › peer-review
- Published
Phylogeny of Neotropical Seirinae (Collembola, Entomobryidae) based on mitochondrial genomes
Godeiro, N. N., Antunes Pacheco, George, Liu, Shanlin, Gioia Cipola, N., Berbel-Filho, W. M., Zhang, F., Gilbert, M Thomas P & Bellini, B. C., 2020, In: Zoologica Scripta. 49, 3, p. 329-339Research output: Contribution to journal › Journal article › peer-review
- Published
Recent mitochondrial lineage extinction in the critically endangered Javan rhinoceros
Margaryan, Ashot, Sinding, Mikkel Holger Strander, Liu, Shanlin, Vieira, Filipe Garrett, Chan, Y. L., Nathan, S. K. S. S., Moodley, Y., Bruford, M. W. & Gilbert, M Thomas P, 2020, In: Zoological Journal of the Linnean Society. 190, 1, p. 372-383 12 p.Research output: Contribution to journal › Journal article › peer-review
- Published
The evolutionary history of extinct and living lions
de Manuel, M., Barnett, R., Sandoval-Velasco, M., Yamaguchi, N., Vieira, F. G., Mendoza, M. L. Z., Liu, S., Martin, M. D., Sinding, M-H. S., Mak, S. S. T., Caroe, C., Liu, S., Guo, C., Zheng, J., Zazula, G., Baryshnikov, G., Eizirik, E., Koepfli, K-P., Johnson, W. E., Antunes, A. & 9 others, , 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 20, p. 10927-10934 8 p.Research output: Contribution to journal › Journal article › peer-review
- 2019
- Published
Evolutionary history of Polyneoptera and its implications for our understanding of early winged insects
Wipfler, B., Letsch, H., Frandsen, P. B., Kapli, P., Mayer, C., Bartel, D., Buckley, T. R., Donath, A., Edgerly-Rooks, J. S., Fujita, M., Liu, S., Machida, R., Mashimo, Y., Misof, B., Niehuis, O., Peters, R. S., Petersen, M., Podsiadlowski, L., Schuette, K., Shimizu, S. & 5 others, , 19 Feb 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 8, p. 3024-3029Research output: Contribution to journal › Journal article › peer-review
- Published
Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny
Cappellini, E., Welker, F., Pandolfi, L., Ramos-Madrigal, J., Samodova, D., Rüther, P. L., Fotakis, A. K., Lyon, D., Moreno-Mayar, J. V., Bukhsianidze, M., Rakownikow Jersie-Christensen, R., Mackie, M., Ginolhac, A., Ferring, R., Tappen, M., Palkopoulou, E., Dickinson, M. R., Stafford, T. W., Chan, Y. L., Götherström, A. & 23 others, , 2019, In: Nature. 574, 7776, p. 103-107Research output: Contribution to journal › Journal article › peer-review
- Published
The discovery of Neotropical Lepidosira (Collembola, Entomobryidae) and its systematic position
Nunes, R. C., Godeiro, N. N., Antunes Pacheco, George, Liu, Shanlin, Gilbert, M Thomas P, Alvarez-Valin, F., Zhang, F. & Bellini, B. C., 2019, In: Zoologica Scripta. 48, 6, p. 783-800Research output: Contribution to journal › Journal article › peer-review
- 2018
- Published
Performance of amplicon and shotgun sequencing for accurate biomass estimation in invertebrate community samples
Bista, I., Carvalho, G. R., Tang, M., Walsh, K., Zhou, X., Hajibabaei, M., Shokralla, S., Seymour, M., Bradley, D., Liu, Shanlin, Christmas, M. & Creer, S., 1 Sep 2018, In: Molecular Ecology Resources. 18, 5, p. 1020-1034Research output: Contribution to journal › Journal article › peer-review
- Published
Characterization of viral RNA splicing using whole-transcriptome datasets from host species
Zhou, C., Liu, Shanlin, Song, W., Luo, S., Meng, G., Yang, C., Yang, H., Ma, J., Wang, L., Gao, S., Wang, J., Yang, H., Zhao, Y., Wang, H. & Zhou, X., 2018, In: Scientific Reports. 8, 14 p., 3273.Research output: Contribution to journal › Journal article › peer-review
- Published
Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq
Kodama, M., Brinch-pedersen, H., Sharma, S., Holme, I. B., Joernsgaard, B., Dzhanfezova, T., Amby, Daniel Buchvaldt, Vieira, Filipe Garrett, Liu, Shanlin & Gilbert, M. T. P., 2018, In: BMC Genomics. 19, 13 p., 811.Research output: Contribution to journal › Journal article › peer-review
- Published
New data, same story: phylogenomics does not support Syrphoidea (Diptera: Syrphidae, Pipunculidae)
Pauli, T., Burt, T. O., Meusemann, K., Bayless, K., Donath, A., Podsiadlowski, L., Mayer, C., Kozlov, A., Vasilikopoulos, A., Liu, Shanlin, Zhou, X., Yeates, D., Misof, B., Peters, R. S. & Mengual, X., 2018, In: Systematic Entomology. 43, 3, p. 447-459 13 p.Research output: Contribution to journal › Journal article › peer-review
- Published
The evolutionary genomic history of the saola
Liu, Shanlin, 2018, Natural History Museum of Denmark, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis
- Published
Transcriptome sequence-based phylogeny of chalcidoid wasps (Hymenoptera: Chalcidoidea) reveals a history of rapid radiations, convergence, and evolutionary success
Peters, R. S., Niehuis, O., Gunkel, S., Bläser, M., Mayer, C., Podsiadlowski, L., Kozlov, A., Donath, A., van Noort, S., Liu, Shanlin, Zhou, X., Misof, B., Heraty, J. & Krogmann, L., 2018, In: Molecular Phylogenetics and Evolution. 120, p. 286-296 11 p.Research output: Contribution to journal › Journal article › peer-review
- 2017
- Published
The molecular evolutionary dynamics of oxidative phosphorylation (OXPHOS) genes in Hymenoptera
Li, Y., Zhang, R., Liu, Shanlin, Donath, A., Peters, R. S., Ware, J., Misof, B., Niehuis, O., Pfrender, M. E. & Zhou, X., 28 Dec 2017, In: B M C Evolutionary Biology. 17, 12 p., 269.Research output: Contribution to journal › Journal article › peer-review
- Published
Filling reference gaps via assembling DNA barcodes using high-throughput sequencing-moving toward barcoding the world
Liu, Shanlin, Yang, C., Zhou, C. & Zhou, X., Dec 2017, In: GigaScience. 6, 12, 8 p.Research output: Contribution to journal › Journal article › peer-review
- Published
Transcriptome and target DNA enrichment sequence data provide new insights into the phylogeny of vespid wasps (Hymenoptera: Aculeata: Vespidae)
Bank, S., Sann, M., Mayer, C., Meusemann, K., Donath, A., Podsiadlowski, L., Kozlov, A., Petersen, M., Krogmann, L., Meier, R., Rosa, P., Schmitt, T., Wurdack, M., Liu, Shanlin, Zhou, X., Misof, B., Peters, R. S. & Niehuis, O., Nov 2017, In: Molecular Phylogenetics and Evolution. 116, p. 213-226 14 p.Research output: Contribution to journal › Journal article › peer-review
- Published
Positive and relaxed selection associated with flight evolution and loss in insect transcriptomes
Mitterboeck, T. F., Liu, Shanlin, Adamowicz, S. J., Fu, J., Zhang, R., Song, W., Meusemann, K. & Zhou, X., Oct 2017, In: GigaScience. 6, 10, p. 1-14 14 p.Research output: Contribution to journal › Journal article › peer-review
- Published
An expanded mammal mitogenome dataset from Southeast Asia
Mohd Salleh, F. B., Ramos Madrigal, Jazmin, Peñaloza, F., Liu, Shanlin, Sinding, Mikkel Holger Strander, Patel, R. P., Martins, R., Lenz, D., Fickel, J., Roos, C., Shamsir, M. S., Azman, M. S., Lim, B. K., Rossiter, S. J., Wilting, A. & Gilbert, M Thomas P, Aug 2017, In: GigaScience. 6, 8, p. 1–8 8 p.Research output: Contribution to journal › Journal article › peer-review
- Published
Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
Mak, Sarah Siu Tze, Gopalakrishnan, Shyam, Carøe, C., Geng, C., Liu, Shanlin, Sinding, Mikkel Holger Strander, Kuderna, L. F. K., Zhang, W., Fu, S., Vieira, Filipe Garrett, Germonpré, M., Bocherens, H., Fedorov, S., Petersen, Bent, Sicheritz-Pontén, T., Marques-Bonet, T., KU, thw266, Jiang, H. & Gilbert, M Thomas P, Aug 2017, In: GigaScience. 6, 8, p. 1–13 13 p.Research output: Contribution to journal › Journal article › peer-review
- Published
Evolutionary history of the Hymenoptera
Peters, R. S., Krogmann, L., Mayer, C., Donath, A., Gunkel, S., Meusemann, K., Kozlov, A., Podsiadlowski, L., Petersen, M., Lanfear, R., Diez, P. A., Heraty, J., Kjer, K. M., Klopfstein, S., Meier, R., Polidori, C., Schmitt, T., Liu, S., Zhou, X., Wappler, T. & 3 others, , 3 Apr 2017, In: Current Biology. 27, 7, p. 1013-1018 6 p.Research output: Contribution to journal › Journal article › peer-review
- 2016
- Published
Transcriptomic data from panarthropods shed new light on the evolution of insulator binding proteins in insects
Pauli, T., Vedder, L., Dowling, D., Petersen, M., Meusemann, K., Donath, A., Peters, R. S., Podsiadlowski, L., Mayer, C., Liu, Shanlin, Zhou, X., Heger, P., Wiehe, T., Hering, L., Mayer, G., Misof, B. & Niehuis, O., 3 Nov 2016, In: BMC Genomics. 17, 10 p., 861.Research output: Contribution to journal › Journal article › peer-review
- Published
Mitochondrial capture enriches mito-DNA 100 fold, enabling PCR-free mitogenomics biodiversity analysis
Liu, Shanlin, Wang, X., Xie, L., Tan, M., Li, Z., Su, X., Zhang, H., Misof, B., Kjer, K. M., Tang, M., Niehuis, O., Jiang, H. & Zhou, X., 2016, In: Molecular Ecology Resources. 16, 2, p. 470-479 10 p.Research output: Contribution to journal › Journal article › peer-review
- Published
Phylogenetic origin and diversification of RNAi pathway genes in insects
Dowling, D., Pauli, T., Donath, A., Meusemann, K., Podsiadlowski, L., Petersen, M., Peters, R. S., Mayer, C., Liu, Shanlin, Zhou, X., Misof, B. & Niehuis, O., 2016, In: Genome Biology and Evolution. 8, 12, p. 3784-3793 10 p.Research output: Contribution to journal › Journal article › peer-review
ID: 143259847
Most downloads
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534
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Mitochondrial capture enriches mito-DNA 100 fold, enabling PCR-free mitogenomics biodiversity analysis
Research output: Contribution to journal › Journal article › peer-review
Published -
467
downloads
Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
Research output: Contribution to journal › Journal article › peer-review
Published -
221
downloads
Positive and relaxed selection associated with flight evolution and loss in insect transcriptomes
Research output: Contribution to journal › Journal article › peer-review
Published