Tom Gilbert

Tom Gilbert

Professor


  1. 2024
  2. Published

    Exploring the microbial diversity of novel misos with metagenomics

    Kothe, C. I., Rasmussen, Jacob Agerbo, Mak, Sarah Siu Tze, Gilbert, M Thomas P & Evans, J., 2024, In: Food Microbiology. 117, 9 p., 104372.

    Research output: Contribution to journalJournal articlepeer-review

  3. E-pub ahead of print

    Field and laboratory guidelines for reliable bioinformatic and statistical analysis of bacterial shotgun metagenomic data

    Aizpurua Arrieta, Ostaizka, Dunn, Rob, Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Alberdi, Antton, 2024, (E-pub ahead of print) In: Critical Reviews in Biotechnology.

    Research output: Contribution to journalReviewpeer-review

  4. Published

    Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon

    Brealey, Jaelle, Kodama, M., Rasmussen, Jacob Agerbo, Hansen, Søren Blikdal, Santos-Bay, Luisa, Lecaudey, L. A., Hansen, M., Fjære, E., Myrmel, L. S., Madsen, L., Bernhard, A., Sveier, H., Kristiansen, Karsten, Gilbert, M Thomas P, Martin, M. D. & Limborg, Morten Tønsberg, 2024, In: mSystems. 9, 2, 29 p., e01043-23.

    Research output: Contribution to journalJournal articlepeer-review

  5. 2023
  6. Published

    A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants

    Rice, E. S., Alberdi, A., Alfieri, J., Athrey, G., Balacco, J. R., Bardou, P., Blackmon, H., Charles, M., Cheng, H. H., Fedrigo, O., Fiddaman, S. R., Formenti, G., Frantz, L. A. F., Gilbert, M. T. P., Hearn, C. J., Jarvis, E. D., Klopp, C., Marcos, S., Mason, A. S., Velez-Irizarry, D. & 2 others, Xu, L. & Warren, W. C., 2023, In: BMC Biology. 21, 17 p., 267.

    Research output: Contribution to journalJournal articlepeer-review

  7. Published

    A simplified protocol for DNA extraction from FTA cards for faecal microbiome studies

    Botnen, A. B., Bjørnsen, Mads Bjørn, Alberdi, Antton, Gilbert, M Thomas P & Aizpurua Arrieta, Ostaizka, 2023, In: Heliyon. 9, 1, 10 p., e12861.

    Research output: Contribution to journalJournal articlepeer-review

  8. Published

    Ancient DNA from a lost Negev Highlands desert grape reveals a Late Antiquity wine lineage

    Cohen, P., Bacilieri, R., Ramos Madrigal, Jazmin, Privman, E., Boaretto, E., Weber, A., Fuks, D., Weiss, E., Erickson-Gini, T., Bucking, S., Tepper, Y., Cvikel, D., Schmidt, J., Gilbert, M Thomas P, Wales, N., Bar-Oz, G. & Meiri, M., 2023, In: PNAS. 120, 17, 8 p., e2213563120.

    Research output: Contribution to journalJournal articlepeer-review

  9. Published

    Ancient DNA reveals genetic admixture in China during tiger evolution

    Sun, X., Liu, Y. C., Tiunov, M. P., Gimranov, D. O., Zhuang, Y., Han, Y., Driscoll, C. A., Pang, Y., Li, C., Pan, Y., Velasco, M. S., Gopalakrishnan, S., Yang, R. Z., Li, B. G., Jin, K., Xu, X., Uphyrkina, O., Huang, Y., Wu, X. H., Gilbert, M. T. P. & 3 others, O’Brien, S. J., Yamaguchi, N. & Luo, S., 2023, In: Nature Ecology and Evolution. 7, 11, p. 1914-1929 29 p.

    Research output: Contribution to journalJournal articlepeer-review

  10. Published

    Assessing the genetic composition of cotton-top tamarins (Saguinus oedipus) before sweeping anthropogenic impact

    Rasmussen, Linett, Fontsere, Claudia, Soto-Calderón, I. D., Guillen, R., Savage, A., Hansen, Anders Johannes, Hvilsom, C. & Gilbert, M Thomas P, 2023, In: Molecular Ecology. 32, 20, p. 5514-5527 14 p.

    Research output: Contribution to journalJournal articlepeer-review

  11. Published

    Changes in the functional diversity of modern bird species over the last million years

    Germain, Ryan Ross, Feng, S., Buffan, L., Carmona, C. P., Chen, G., Graves, G. R., Tobias, J. A., Rahbek, Carsten, Lei, F., Fjeldså, Jon, Hosner, Peter Andrew, Gilbert, M Thomas P, Zhang, G. & Nogues, David Bravo, 2023, In: PNAS. 120, 7, 9 p., e2201945119.

    Research output: Contribution to journalJournal articlepeer-review

  12. Published

    Co-diversification of an intestinal Mycoplasma and its salmonid host

    Rasmussen, Jacob Agerbo, Kiilerich, P., Madhun, A. S., Waagbø, R., Lock, E. J. R., Madsen, L., Gilbert, M Thomas P, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2023, In: ISME Journal. 17, 5, p. 682-692 11 p.

    Research output: Contribution to journalJournal articlepeer-review

  13. Published

    Conservation implications of elucidating the Korean wolf taxonomic ambiguity through whole-genome sequencing

    Hernández-Alonso, G., Ramos-Madrigal, J., Sun, X., Scharff-Olsen, C. H., Sinding, M. H. S., Martins, N. F., Ciucani, M. M., Mak, S. S. T., Lanigan, L. T., Clausen, C. G., Bhak, J., Jeon, S., Kim, C., Eo, K. Y., Cho, S. H., Boldgiv, B., Gantulga, G., Unudbayasgalan, Z., Kosintsev, P. A., Stenøien, H. K. & 2 others, Gilbert, M Thomas P & Gopalakrishnan, Shyam, 2023, In: Ecology and Evolution. 13, 8, 15 p., e10404.

    Research output: Contribution to journalJournal articlepeer-review

  14. Published

    Evolution of the germline mutation rate across vertebrates

    Bergeron, Lucie Adrienne, Besenbacher, S., Zheng, J., Li, P., Bertelsen, Mads Frost, Quintard, B., Hoffman, J. I., Li, Z., Leger, J. S., Shao, C., Stiller, Josefin, Gilbert, M Thomas P, Schierup, M. H. & KU, thw266, 2023, In: Nature. 615, p. 285-291

    Research output: Contribution to journalJournal articlepeer-review

  15. Published

    Future-proofing environmental DNA and trait-based predictions of food webs

    Pereira, Catia Lucio, Ersoy, Z., Gilbert, M Thomas P, Gravel, D., Araújo, M. B. & Matias, M. G., 2023, In: BioScience. 73, 12, p. 862-878 17 p.

    Research output: Contribution to journalJournal articlepeer-review

  16. Published

    Genomic diversity and differentiation between island and mainland populations of white-tailed eagles (Haliaeetus albicilla)

    Hansen, C. C. R., Láruson, Á. J., Rasmussen, Jacob Agerbo, Ballesteros, J. A. C., Sinding, Mikkel Holger Strander, Hallgrimsson, G. T., von Schmalensee, M., Stefansson, R. A., Skarphédinsson, K. H., Labansen, A. L., Leivits, M., Sonne, C., Dietz, R., Skelmose, K., Boertmann, D., Eulaers, I., Martin, M. D., Helgason, A. S., Gilbert, M Thomas P & Pálsson, S., 2023, In: Molecular Ecology. 32, 8, p. 1925-1942 18 p.

    Research output: Contribution to journalJournal articlepeer-review

  17. Published

    Genomics of adaptive evolution in the woolly mammoth

    Díez-del-Molino, D., Dehasque, M., Chacón-Duque, J. C., Chrzanová Pecnerová, Patrícia, Tikhonov, A., Protopopov, A., Plotnikov, V., Kanellidou, F., Nikolskiy, P., Mortensen, P., Danilov, G. K., Vartanyan, S., Gilbert, M Thomas P, Lister, A. M., Heintzman, P. D., van der Valk, T. & Dalén, L., 2023, In: Current Biology. 33, 9, 17 p.

    Research output: Contribution to journalJournal articlepeer-review

  18. Published

    Historic Sampling of a Vanishing Beast: Population Structure and Diversity in the Black Rhinoceros

    Sánchez-Barreiro, F., Westbury, Binia De Cahsan, Westbury, Michael Vincent, Sun, Xin, Margaryan, Ashot, Fontsere, Claudia, Bruford, M. W., Russo, I. M., Kalthoff, D. C., Sicheritz-Pontén, Thomas, Petersen, Bent, Dalén, L., KU, thw266, Marquès-Bonet, T., Gilbert, M Thomas P & Moodley, Y., 2023, In: Molecular Biology and Evolution. 40, 9, 19 p., msad180.

    Research output: Contribution to journalJournal articlepeer-review

  19. Published

    Hvad er hologenomik?

    Spile, M. B., Gilbert, M Thomas P & Noer, Christina, 2023, In: Kaskelot. 245, p. 12-18

    Research output: Contribution to journalJournal article

  20. Published

    Intestinal epigenotype of Atlantic salmon (Salmo salar) associates with tenacibaculosis and gut microbiota composition

    Hansen, Søren Blikdal, Bozzi, D., Mak, Sarah Siu Tze, Clausen, C. G., Nielsen, Tue Kjærgaard, Kodama, M., Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Limborg, Morten Tønsberg, 2023, In: Genomics. 115, 3, 9 p., 110629.

    Research output: Contribution to journalJournal articlepeer-review

  21. Published

    Mammal mitogenomics from invertebrate-derived DNA

    Danabalan, R., Merkel, K., Schnell, I. B., Arandjelovic, M., Boesch, C., Brazzola, G., Dieguez, P., Dupain, J., Kambale-Vyalengerera, M., Kühl, H. S., Hoffmann, C., Lapuente, J., Thinh, V. N., Zimmermann, F., Leendertz, F. H., Gilbert, M Thomas P, Roos, C., Mazzoni, C., Gogarten, J. F. & Calvignac-Spencer, S., 2023, In: Environmental DNA. 5, 5, p. 1004-1015 12 p.

    Research output: Contribution to journalJournal articlepeer-review

  22. Published

    On the origin and evolution of RNA editing in metazoans

    Zhang, P., Zhu, Y., Guo, Q., Li, J., Zhan, X., Yu, H., Xie, N., Tan, H., Lundholm, Nina, Garcia-Cuetos, L., Martin, M. D., Subirats, M. A., Su, Y., Ruiz-Trillo, I., Martindale, M. Q., Yu, J., Gilbert, M Thomas P, KU, thw266 & Li, Q., 2023, In: Cell Reports. 42, 2, 22 p., 112112.

    Research output: Contribution to journalJournal articlepeer-review

  23. Published

    Redefining the Evolutionary History of the Rock Dove, Columba livia, Using Whole Genome Sequences

    Hernández Alonso, Germán, Ramos Madrigal, Jazmin, van Grouw, H., Ciucani, Marta Maria, Cavill, E. L., Sinding, Mikkel Holger Strander, Gopalakrishnan, Shyam, Antunes Pacheco, George & Gilbert, M Thomas P, 2023, In: Molecular Biology and Evolution. 40, 11, 17 p., msad243.

    Research output: Contribution to journalJournal articlepeer-review

  24. Published

    Species-specific traits mediate avian demographic responses under past climate change

    Germain, Ryan Ross, Feng, S., Chen, G., Graves, G. R., Tobias, J. A., Rahbek, Carsten, Lei, F., Fjeldså, Jon, Hosner, Peter Andrew, Gilbert, M Thomas P, KU, thw266 & Nogues, David Bravo, 2023, In: Nature Ecology and Evolution. 7, 6, p. 862-872 11 p.

    Research output: Contribution to journalJournal articlepeer-review

  25. Published

    The ancestry and geographical origins of St Helena's liberated Africans

    Sandoval-Velasco, Marcela, Jagadeesan, A., Ramos Madrigal, Jazmin, Ávila-Arcos, M. C., Fortes-Lima, C. A., Watson, J., Johannesdóttir, E., Cruz-Dávalos, D. I., Gopalakrishnan, Shyam, Moreno Mayar, J. Víctor, Niemann, Jonas, Renaud, G., Brown, K. A. R., Bennett, H., Pearson, A., Helgason, A., Gilbert, M Thomas P & Schroeder, Hannes, 2023, In: American Journal of Human Genetics. 110, 9, p. 1590-1599 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  26. Published

    The extinct Sicilian wolf shows a complex history of isolation and admixture with ancient dogs

    Ciucani, M. M., Ramos-Madrigal, J., Hernández-Alonso, G., Carmagnini, A., Aninta, S. G., Sun, X., Scharff-Olsen, C. H., Lanigan, L. T., Fracasso, I., Clausen, C. G., Aspi, J., Kojola, I., Baltrūnaitė, L., Balčiauskas, L., Moore, J., Åkesson, M., Saarma, U., Hindrikson, M., Hulva, P., Bolfíková, B. Č. & 19 others, Nowak, C., Godinho, R., Smith, S., Paule, L., Nowak, S., Mysłajek, R. W., Lo Brutto, S., Ciucci, P., Boitani, L., Vernesi, C., Stenøien, H. K., Smith, O., Frantz, L., Rossi, L., Angelici, F. M., Cilli, E., Sinding, Mikkel Holger Strander, Gilbert, M Thomas P & Gopalakrishnan, Shyam, 2023, In: iScience. 26, 8, 22 p., 107307.

    Research output: Contribution to journalJournal articlepeer-review

  27. Published

    The genetic history of Scandinavia from the Roman Iron Age to the present

    Rodríguez-Varela, R., Moore, K. H. S., Ebenesersdóttir, S. S., Kilinc, G. M., Kjellström, A., Papmehl-Dufay, L., Alfsdotter, C., Berglund, B., Alrawi, L., Kashuba, N., Sobrado, V., Lagerholm, V. K., Gilbert, E., Cavalleri, G. L., Hovig, E., Kockum, I., Olsson, T., Alfredsson, L., Hansen, T. F., Werge, T. & 24 others, Munters, A. R., Bernhardsson, C., Skar, B., Christophersen, A., Turner-Walker, G., Gopalakrishnan, Shyam, Daskalaki, E., Omrak, A., Pérez-Ramallo, P., Skoglund, P., Girdland-Flink, L., Gunnarsson, F., Hedenstierna-Jonson, C., Gilbert, M Thomas P, Lidén, K., Jakobsson, M., Einarsson, L., Victor, H., Krzewińska, M., Zachrisson, T., Storå, J., Stefánsson, K., Helgason, A. & Götherström, A., 2023, In: Cell. 186, 1, p. 32-46.e19

    Research output: Contribution to journalJournal articlepeer-review

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ID: 12980