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  1. Published

    100 ancient genomes show repeated population turnovers in Neolithic Denmark

    Allentoft, M. E., Sikora, M., Fischer, A., Sjögren, K-G., Ingason, A., Macleod, R., Rosengren, A., Schulz Paulsson, B., Jørkov, M. L. S., Novosolov, M., Stenderup, J., Price, T. D., Mortensen, M. F., Nielsen, A. B., Hede, M. U., Sørensen, L., Nielsen, P. O., Rasmussen, P., Jensen, T. Z. T., Refoyo-Martínez, A. & 48 others, Irving-Pease, Evan, Barrie, William, Pearson, A., Sousa da Mota, B., Demeter, Fabrice, Henriksen, Rasmus Henrik Amund, Vimala, Tharsika, McColl, Hugh, Vaughn, Andrew Howland, Vinner, Lasse, Renaud, Gabriel, Stern, A., Johannsen, N. N., Ramsøe, Abigail Daisy, Schork, A. J., Ruter, Anthony Henry, Gotfredsen, Anne Birgitte, Nielsen, B. H., Petersen, Erik Brinch, Kannegaard, E., Hansen, J., Pedersen, K. B., Pedersen, L., Klassen, L., Meldgaard, Morten, Johansen, M., Uldum, O. C., Lotz, P., Lysdahl, P., Bangsgaard, Pernille, Petersen, P. V., Maring, R., Iversen, Rune, Wåhlin, S., Sørensen, S. A., Andersen, S. H., Jørgensen, T., Lynnerup, Niels, Lawson, D. J., Rasmussen, Simon, Korneliussen, Thorfinn Sand, Kjær, Kurt H., Durbin, R., Nielsen, Rasmus, Delaneau, O., Werge, Thomas, Kristiansen, Kristian & Willerslev, Eske, 2024, In: Nature. 625, 7994, p. 329-337 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Population genomics of post-glacial western Eurasia

    Allentoft, M. E., Sikora, M., Refoyo-Martínez, A., Irving-Pease, E. K., Fischer, A., Barrie, W., Ingason, A., Stenderup, J., Sjögren, K-G., Pearson, A., da Mota, B. S., Paulsson, B. S., Halgren, A., Macleod, R., Jørkov, M. L. S., Demeter, F., Sørensen, L., Nielsen, P. O., Henriksen, R. A., Vimala, T. & 144 others, McColl, Hugh, Margaryan, Ashot, Ilardo, M., Vaughn, Andrew Howland, Mortensen, M. F., Nielsen, A. B., Hede, M. U., Johannsen, N. N., Rasmussen, P., Vinner, Lasse, Renaud, Gabriel, Stern, A., Jensen, Theis Zetner Trolle, Scorrano, Gabriele, Schroeder, Hannes, Lysdahl, P., Ramsøe, Abigail Daisy, Skorobogatov, A., Schork, A. J., Rosengren, A., Ruter, Anthony Henry, Outram, A., Timoshenko, A. A., Buzhilova, A., Coppa, A., Zubova, A., Silva, A. M., Hansen, Anders Johannes, Gromov, A., Logvin, A., Gotfredsen, Anne Birgitte, Nielsen, B. H., González-Rabanal, B., Lalueza-Fox, C., McKenzie, C. J., Gaunitz, Charleen, Blasco, C., Liesau, C., Martinez-Labarga, C., Pozdnyakov, D. V., Cuenca-Solana, D., Lordkipanidze, D. O., En’shin, D., Salazar-García, D. C., Price, T. D., Borić, D., Kostyleva, E., Veselovskaya, E. V., Usmanova, E. R., Cappellini, Enrico, Petersen, Erik Brinch, Kannegaard, E., Radina, F., Yediay, Fulya Eylem, Duday, H., Gutiérrez-Zugasti, I., Merts, I., Potekhina, I., Shevnina, I., Altinkaya, Isin, Guilaine, J., Hansen, J., Tortosa, J. E. A., Zilhão, J., Vega, J., Pedersen, K. B., Tunia, K., Zhao, Lei, Mylnikova, L. N., Larsson, L., Metz, L., Yepiskoposyan, L., Pedersen, L., Sarti, L., Orlando, L., Slimak, L., Klassen, L., Blank, M., González-Morales, M., Silvestrini, M., Vretemark, M., Nesterova, M. S., Rykun, M., Rolfo, M. F., Szmyt, M., Przybyła, M., Calattini, M., Sablin, M., Dobisíková, M., Meldgaard, Morten, Johansen, M., Berezina, N., Card, N., Saveliev, N. A., Poshekhonova, O., Rickards, O., Lozovskaya, O. V., Gábor, O., Uldum, O. C., Aurino, P., Kosintsev, P., Courtaud, P., Ríos, P., Mortensen, P., Lotz, P., Persson, P., Bangsgaard, Pernille, de Barros Damgaard, P., Vang Petersen, P., Martinez, P. P., Włodarczak, P., Smolyaninov, R. V., Maring, R., Menduiña, R., Badalyan, R., Iversen, Rune, Turin, R., Vasilyev, S., Wåhlin, S., Borutskaya, S., Skochina, S., Sørensen, S. A., Andersen, S. H., Jørgensen, T., Serikov, Y. B., Molodin, V. I., Smrcka, V., Merts, V., Appadurai, V., Moiseyev, V., Magnusson, Y., Kjær, Kurt H., Lynnerup, Niels, Lawson, D. J., Sudmant, P. H., Rasmussen, Simon, Korneliussen, Thorfinn Sand, Durbin, R., Nielsen, Rasmus, Delaneau, O., Werge, Thomas, Racimo, Fernando, Kristiansen, Kristian & Willerslev, Eske, 2024, In: Nature. 625, 7994, p. 301-311

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    CropPol: A dynamic, open and global database on crop pollination

    Allen-Perkins, A., Magrach, A., Dainese, M., Garibaldi, L. A., Kleijn, D., Rader, R., Reilly, J. R., Winfree, R., Lundin, O., McGrady, C. M., Brittain, C., Biddinger, D. J., Artz, D. R., Elle, E., Hoffman, G., Ellis, J. D., Daniels, J., Gibbs, J., Campbell, J. W., Brokaw, J. & 167 others, Wilson, J. K., Mason, K., Ward, K. L., Gundersen, K. B., Bobiwash, K., Gut, L., Rowe, L. M., Boyle, N. K., Williams, N. M., Joshi, N. K., Rothwell, N., Gillespie, R. L., Isaacs, R., Fleischer, S. J., Peterson, S. S., Rao, S., Pitts-Singer, T. L., Fijen, T., Boreux, V., Rundlöf, M., Viana, B. F., Klein, A., Smith, H. G., Bommarco, R., Carvalheiro, L. G., Ricketts, T. H., Ghazoul, J., Krishnan, S., Benjamin, F. E., Loureiro, J., Castro, S., Raine, N. E., de Groot, G. A., Horgan, F. G., Hipólito, J., Smagghe, G., Meeus, I., Eeraerts, M., Potts, S. G., Kremen, C., García, D., Miñarro, M., Crowder, D. W., Pisanty, G., Mandelik, Y., Vereecken, N. J., Leclercq, N., Weekers, T., Lindstrom, S. A. M., Stanley, D. A., Zaragoza-Trello, C., Nicholson, C. C., Scheper, J., Rad, C., Marks, E. A. N., Mota, L., Danforth, B., Park, M., Bezerra, A. D. M., Freitas, B. M., Mallinger, R. E., Oliveira da Silva, F., Willcox, B., Ramos, D. L., da Silva e Silva, F. D., Lázaro, A., Alomar, D., González-Estévez, M. A., Taki, H., Cariveau, D. P., Garratt, M. P. D., Nabaes Jodar, D. N., Stewart, R. I. A., Ariza, D., Pisman, M., Lichtenberg, E. M., Schüepp, C., Herzog, F., Entling, M. H., Dupont, Y. L., Michener, C. D., Daily, G. C., Ehrlich, P. R., Burns, K. L. W., Vilà, M., Robson, A., Howlett, B., Blechschmidt, L., Jauker, F., Schwarzbach, F., Nesper, M., Diekötter, T., Wolters, V., Castro, H., Gaspar, H., Nault, B. A., Badenhausser, I., Petersen, J. D., Tscharntke, T., Bretagnolle, V., Willis Chan, D. S., Chacoff, N., Andersson, G. K. S., Jha, S., Colville, J. F., Veldtman, R., Coutinho, J., Bianchi, F. J. J. A., Sutter, L., Albrecht, M., Jeanneret, P., Zou, Y., Averill, A. L., Saez, A., Sciligo, A. R., Vergara, C. H., Bloom, E. H., Oeller, E., Badano, E. I., Loeb, G. M., Grab, H., Ekroos, J., Gagic, V., Cunningham, S. A., Åström, J., Cavigliasso, P., Trillo, A., Classen, A., Mauchline, A. L., Montero-Castaño, A., Wilby, A., Woodcock, B. A., Sidhu, C. S., Steffan-Dewenter, I., Vogiatzakis, I. N., Herrera, J. M., Otieno, M., Gikungu, M. W., Cusser, S. J., Nauss, T., Nilsson, L., Knapp, J., Ortega-Marcos, J. J., González, J. A., Osborne, J. L., Blanche, R., Shaw, R. F., Hevia, V., Stout, J., Arthur, A. D., Blochtein, B., Szentgyorgyi, H., Li, J., Mayfield, M. M., Woyciechowski, M., Nunes-Silva, P., Halinski de Oliveira, R., Henry, S., Simmons, B. I., Dalsgaard, Bo, Hansen, K., Sritongchuay, T., O'Reilly, A. D., Chamorro García, F. J., Nates Parra, G., Magalhães Pigozo, C. & Bartomeus, I., 2022, In: Ecology. 103, 3, 8 p., e3614.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    A mitochondrial genetic divergence proxy predicts the reproductive compatibility of mammalian hybrids

    Allen, R., Ryan, H., Davis, B. W., King, C., Frantz, L., Irving-Pease, Evan, Barnett, R., Linderholm, A., Loog, L., Haile, J., Lebrasseur, O., White, M., Kitchener, A. C., Murphy, W. J. & Larson, G., 2020, In: Proceedings of the Royal Society B: Biological Sciences. 287, 1928, 7 p., 20200690.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Spatial Phylogenetics of Florida Vascular Plants: The Effects of Calibration and Uncertainty on Diversity Estimates

    Allen, J. M., Germain-Aubrey, C. C., Barve, N., Neubig, K. M., Majure, L. C., Laffan, S. W., Mishler, B. D., Owens, Hannah Lois, Smith, S. A., Whitten, W. M., Abbott, J. R., Soltis, D. E., Guralnick, R. & Soltis, P. S., 2019, In: iScience. 11, p. 57-70 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Glacial history of the Åsgardfonna Ice Cap, NE Spitsbergen, since the last glaciation

    Allaart, L., Schomacker, A., Larsen, Nicolaj Krog, Nørmark, E., Rydningen, T. A., Farnsworth, W. R., Retelle, M., Brynjólfsson, S., Forwick, M. & Kjellman, S. E., 2021, In: Quaternary Science Reviews. 251, 106717.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    SARS-CoV-2 RNA stability in dry swabs for longer storage and transport at different temperatures

    Alfaro-Núñez, A., Crone, S., Mortensen, S., Rosenstierne, M. W., Fomsgaard, A., Marving, E., Nielsen, S. H., Jørgensen, M. G. P., Polacek, C., Cohen, A. S. & Nielsen, C., 2022, In: Transboundary and Emerging Diseases. 69, 2, p. 189-194

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Non-invasive surveys of mammalian viruses using environmental DNA

    Alfano, N., Dayaram, A., Axtner, J., Tsangaras, K., Kampmann, Marie-Louise, Mohamed, A., Wong, S. T., Gilbert, M Thomas P, Wilting, A. & Greenwood, A. D., 2021, In: Methods in Ecology and Evolution. 12, 10, p. 1941-1952

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Coupled luminescence and cosmogenic nuclide dating of postglacial deflation surfaces and sand drift on a raised ice-contact delta at Veinge, SW Sweden

    Alexanderson, H., Möller, P., Jain, M., Knudsen, M. F., Larsen, Nicolaj Krog, Perić, Z. M., Søndergaard, A. S. & Thompson, W., 2024, In: Quaternary Geochronology. 80, 21 p., 101500.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Morphological and Metric Description of a Rare Mesolithic Deciduous Tooth from Trail Creek Caves, Alaska

    Alexandersen, V., Vinner, Lasse & Primeau, C., 2023, In: Dental Anthropology. 36, 1, p. 28-37

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Species richness is more important for ecosystem functioning than species turnover along an elevational gradient

    Albrecht, J., Peters, M. K., Becker, J. N., Behler, C., Classen, A., Ensslin, A., Ferger, S. W., Gebert, F., Gerschlauer, F., Helbig-Bonitz, M., Kindeketa, W. J., Kühnel, A., Mayr, A. V., Njovu, H. K., Pabst, H., Pommer, U., Röder, J., Rutten, G., Schellenberger Costa, D., Sierra-Cornejo, N. & 27 others, Vogeler, A., Vollstädt, Max, Dulle, H. I., Eardley, C. D., Howell, K. M., Keller, A., Peters, R. S., Kakengi, V., Hemp, C., Zhang, J., Manning, P., Mueller, T., Bogner, C., Böhning-Gaese, K., Brandl, R., Hertel, D., Huwe, B., Kiese, R., Kleyer, M., Leuschner, C., Kuzyakov, Y., Nauss, T., Tschapka, M., Fischer, M., Hemp, A., Steffan-Dewenter, I. & Schleuning, M., 2021, In: Nature Ecology and Evolution. 5, 12, p. 1582-1593

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    The marine fish food web is globally connected

    Albouy, C., Archambault, P., Appeltans, W., Araújo, M. B., Beauchesne, D., Cazelles, K., Cirtwill, A. R., Fortin, M., Galiana, N., Leroux, S. J., Pellissier, L., Poisot, T., Stouffer, D. B., Wood, S. A. & Gravel, D., 2019, In: Nature Ecology & Evolution. 3, 8, p. 1153-1161

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Promises and pitfalls of using high-throughput sequencing for diet analysis

    Alberdi, Antton, Aizpurua Arrieta, Ostaizka, Bohmann, Kristine, Gopalakrishnan, Shyam, Lynggaard, Christina Islas, Nielsen, M. & Gilbert, M Thomas P, Mar 2019, In: Molecular Ecology Resources. 19, 2, p. 327-348

    Research output: Contribution to journal › Review › Research › peer-review

  14. Published

    Disentangling host–microbiota complexity through hologenomics

    Alberdi, Antton, Andersen, Sandra Breum, Limborg, Morten Tønsberg, Dunn, Rob & Gilbert, M Thomas P, 2022, In: Nature Reviews Genetics. 23, 5, p. 281-297 17 p.

    Research output: Contribution to journal › Review › Research › peer-review

  15. Published

    A guide to the application of Hill numbers to DNA-based diversity analyses

    Alberdi, Antton & Gilbert, M Thomas P, 2019, In: Molecular Ecology Resources. 19, 4, p. 804-817 14 p.

    Research output: Contribution to journal › Review › Research › peer-review

  16. Published

    DNA metabarcoding and spatial modelling link diet diversification with distribution homogeneity in European bats

    Alberdi, Antton, Razgour, O., Aizpurua Arrieta, Ostaizka, Novella-Fernandez, R., Aihartza, J., Budinski, I., Garin, I., Ibanez, C., Izagirre, E., Rebelo, H., Russo, D., Vlaschenko, A., Zhelyazkova, V., Zrncic, V. & Gilbert, M Thomas P, 2020, In: Nature Communications. 11, 8 p., 1154.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Diversity and compositional changes in the gut microbiota of wild and captive vertebrates: a meta-analysis

    Alberdi, Antton, Martin Bideguren, Garazi & Aizpurua Arrieta, Ostaizka, 2021, In: Scientific Reports. 11, 10 p., 22660.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Threads of memory: Reviving the ornament of a dead child at the Neolithic village of Ba`ja (Jordan)

    Alarashi, H., Benz, M., Gresky, J., Burkhardt, A., Fischer, A., Gourichon, L., Gerlitzki, M., Manfred, M., Sakalauskaite, J., Demarchi, B., Mackie, Meaghan, Collins, Matthew James, Odriozola, C. P., Garrido Cordero, J. Á., Avilés, M. Á., Vigorelli, L., Re, A. & Gebel, H. G. K., 2023, In: PLoS ONE. 18, 8, 54 p., e0288075.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms

    Alanin, K. W. S., Jørgensen, T. S., Browne, Patrick Denis, Petersen, Bent, Riber, Leise, Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Plasmid. 115, 11 p., 102576.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Temporal and spatial infection patterns of the rhizocephalan parasite Parasacculina leptodiae (Guérin-Ganivet, 1911) in the crab Leptodius exaratus along the shores of Kuwait

    Al-Wazzan, Z., Waser, A. M., Glenner, Henrik, Gimenez, L. & Thieltges, D. W., 2021, In: Marine Biodiversity. 51, 6, 9 p., 90.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    The role of the gut microbiota in the dietary niche expansion of fishing bats

    Aizpurua Arrieta, Ostaizka, Jessen, Lasse Nyholm, Morris, E., Chaverri, G., Montalvo, L. G. H., Flores-Martinez, J. J., Lin, A., Razgour, O., Gilbert, M Thomas P & Alberdi, Antton, 2021, In: BMC Animal Microbiome. 3, 14 p., 76.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. E-pub ahead of print

    Field and laboratory guidelines for reliable bioinformatic and statistical analysis of bacterial shotgun metagenomic data

    Aizpurua Arrieta, Ostaizka, Dunn, Rob, Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Alberdi, Antton, 2024, (E-pub ahead of print) In: Critical Reviews in Biotechnology.

    Research output: Contribution to journal › Review › Research › peer-review

  23. Published

    Unravelling animal–microbiota evolution on a chip

    Aizpurua Arrieta, Ostaizka, Blijleven, Kees, Trivedi, Urvish, Gilbert, M Thomas P & Alberdi, Antton, 2023, In: Trends in Microbiology. 31, 10, p. 995-1002 8 p.

    Research output: Contribution to journal › Review › Research › peer-review

  24. Published

    Prehistoric and historic exploitation of marine mammals in the Black Sea

    Aiken, Magie, Gladilina, E., Çakırlar, C., Telizhenko, S., van den Hurk, Youri, Bejenaru, L., Olsen, Morten Tange & Gol'din, P., 2023, In: Quaternary Science Reviews. 314, 14 p., 108210.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. E-pub ahead of print

    Earliest Records of Holocene Cetaceans in the Black Sea

    Aiken, Magie, Gladilina, E., Çakirlar, C., Telizhenko, S., Bejenaru, L., Bukhsianidze, M., Olsen, Morten Tange & Gol'din, P., 2024, (E-pub ahead of print) In: Journal of Quaternary Science. 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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