- 2022
- Published
Circle-Seq reveals genomic and disease-specific hallmarks in urinary cell-free extrachromosomal circular DNAs
Lv, W., Pan, X., Han, P., Wang, Z., Feng, W., Xing, X., Wang, Q., Qu, K., Zeng, Y., Zhang, C., Xu, Z., Li, Y., Zheng, T., Lin, L., Liu, C., Liu, X., Li, H., Henriksen, R. A., Bolund, L., Lin, L. & 7 others, , 2022, In: Clinical and Translational Medicine. 12, 4, 16 p., e817.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Community monitoring of natural resource systems and the environment
Danielsen, F., Eicken, H., Funder, M., Johnson, N., Lee, O., Theilade, Ida, Argyriou, D. & Burgess, Neil David, 2022, In: Annual Review of Environment and Resources. 47, p. 637-670 34 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparing Copy Number Variations in a Danish Case Cohort of Individuals with Psychiatric Disorders
Calle Sánchez, X., Helenius, D., Bybjerg-Grauholm, J., Pedersen, C., Hougaard, D. M., Børglum, A. D., Nordentoft, Merete, Mors, O., Mortensen, P. B., Geschwind, D. H., Montalbano, S., Raznahan, A., Thompson, W. K., Ingason, A. & Werge, Thomas, 2022, In: JAMA Psychiatry. 79, 1, p. 59-69Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete Genome Sequence of Dickeya chrysanthemi Bacteriophage DchS19
Mutusamy, P., Jothi, S. J., Kumarasan, Yukgehnaish, Loke, S., Lee, S. Y., Rajandas, Heera & Parimannan, Sivachandran, 2022, In: Microbiology resource announcements. 11, 10, 2 p., e00800-22.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete mitochondrial genomes from museum specimens clarify millipede evolution in the Eastern Arc Mountains
Nielsen, M., Margaryan, Ashot, Nielsen, Tejs Lind, Enghoff, Henrik & Allentoft, Morten Erik, 2022, In: Zoological Journal of the Linnean Society. 196, 2, p. 924-939 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Compositionally and density stratified igneous terrain in Jezero crater, Mars
Wiens, R. C., Udry, A., Beyssac, O., Quantin-Nataf, C., Mangold, N., Cousin, A., Mandon, L., Bosak, T., Forni, O., McLennan, S. M., Sautter, V., Brown, A., Benzerara, K., Johnson, J. R., Mayhew, L., Maurice, S., Anderson, R. B., Clegg, S. M., Crumpler, L., Gabriel, T. S. J. & 73 others, , 2022, In: Science Advances. 8, 34, 16 p., eabo3399.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comprehensive genome-wide association study of different forms of hernia identifies more than 80 associated loci
Fadista, J., Skotte, L., Karjalainen, J., Abner, E., Sørensen, E., Ullum, H., Werge, Thomas, Esko, T., Milani, L., Palotie, A., Daly, M., Melbye, M., Feenstra, B., Geller, F., IPSYCH Grp, I. G. & FinnGen Consortium, F. C., 2022, In: Nature Communications. 13, 11 p., 3200.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Computational Tools for the Analysis of Uncultivated Phage Genomes
Andrade-Martínez, J. S., Camelo Valera, L. C., Chica Cárdenas, L. A., Forero Junco, Laura Milena, López-Leal, G., Moreno-Gallego, J. L., Rangel Piñeros, Guillermo Andres & Reyes, A., 2022, In: Microbiology and Molecular Biology Reviews. 86, 2, e0000421.Research output: Contribution to journal › Review › Research › peer-review
- Published
Conformational analysis and water dynamics: a molecular dynamics study on the survival of a β-lactoglobulin peptide in the archaeological record
Fonseca, B., Freeman, C. L. & Collins, Matthew James, 2022, In: Chemical Physics. 561, 11 p., 111602.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conservation genomics of the endangered Seychelles Magpie-Robin (Copsychus sechellarum): a unique insight into the history of a precious endemic bird
Cavill, Emily Louisa, Gopalakrishnan, Shyam, Puetz, Lara Christine, Ribeiro, Â. M., Mak, Sarah Siu Tze, Rodrigues da Fonseca, Rute Andreia, Antunes Pacheco, George, Dunlop, B., Accouche, W., Shah, N., Zora, A., Calabrese, L., Genner, M., Jones, G., Guo, C., KU, thw266 & Gilbert, M Thomas P, 2022, In: Ibis. 164, 2, p. 396-410 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conservation needs to integrate knowledge across scales
Chaplin-Kramer, R., Brauman, K. A., Cavender-Bares, J., Díaz, S., Duarte, G. T., Enquist, B. J., Garibaldi, L. A., Geldmann, J., Halpern, B. S., Hertel, T. W., Khoury, C. K., Krieger, J. M., Lavorel, S., Mueller, T., Neugarten, R. A., Pinto-Ledezma, J., Polasky, S., Purvis, A., Reyes-García, V., Roehrdanz, P. R. & 7 others, , 2022, In: Nature Ecology and Evolution. 6, 2, p. 118-119 2 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Conservation strategies for the climate crisis: An update on three decades of biodiversity management recommendations from science
McLaughlin, B. C., Skikne, S. A., Beller, E., Blakey, R. V., Olliff-Yang, R. L., Morueta-Holme, Naia, Heller, N. E., Brown, B. J. & Zavaleta, E. S., 2022, In: Biological Conservation. 268, 12 p., 109497.Research output: Contribution to journal › Review › Research › peer-review
- Published
Conserving rhinos by legal trade: Insights from a choice experiment with rhino horn consumers
Dang, V. H. N., Nielsen, Martin Reinhardt & Jacobsen, Jette Bredahl, 2022, In: Ecological Economics. 193, 9 p., 107287.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Constraining marine anoxia under the extremely oxygenated Permian atmosphere using uranium isotopes in calcitic brachiopods and marine carbonates
Wang, W., Zhang, F., Shen, S., Bizzarro, Martin, Garbelli, C., Zheng, Q., Zhang, Y., Yuan, D., Shi, Y., Cao, M. & Dahl, Tais Wittchen, 2022, In: Earth and Planetary Science Letters. 594, 15 p., 117714.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Covariance of pairwise differences on a multi-species coalescent tree and implications for FST
Guerra, G. & Nielsen, Rasmus, 2022, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 377, 1852, 14 p., 20200415.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CropPol: A dynamic, open and global database on crop pollination
Allen-Perkins, A., Magrach, A., Dainese, M., Garibaldi, L. A., Kleijn, D., Rader, R., Reilly, J. R., Winfree, R., Lundin, O., McGrady, C. M., Brittain, C., Biddinger, D. J., Artz, D. R., Elle, E., Hoffman, G., Ellis, J. D., Daniels, J., Gibbs, J., Campbell, J. W., Brokaw, J. & 167 others, , 2022, In: Ecology. 103, 3, 8 p., e3614.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cross-trait assortative mating is widespread and inflates genetic correlation estimates
Border, R., Athanasiadis, G., Buil Demur, Alfonso Alberto, Schork, A. J., Cai, N., Young, A. I., Werge, Thomas, Flint, J., Kendler, K. S., Sankararaman, S., Dahl, A. W. & Zaitlen, N. A., 2022, In: Science. 378, 6621, p. 754-761 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DNA metabarcoding identifies urban foraging patterns of oligolectic and polylectic cavity-nesting bees
Fernandes, Kristen Marie Rose, Prendergast, K., Bateman, P. W., Saunders, B. J., Gibberd, M., Bunce, M. & Nevill, P., 2022, In: Oecologia. 200, 3-4, p. 323-337 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Danish Fungi 2020 - Not Just Another Image Recognition Dataset
Picek, L., Sulc, M., Matas, J., Jeppesen, T. S., Heilmann-Clausen, Jacob, Læssøe, Thomas & Frøslev, Tobias Guldberg, 2022, Proceedings - 2022 IEEE Winter Conference on Applications of Computer Vision, WACV 2022. O'Conner, L. (ed.). IEEE, p. 3281-3291 11 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Demes: a standard format for demographic models
Gower, Graham, Ragsdale, A. P., Bisschop, G., Gutenkunst, R. N., Hartfield, M., Noskova, E., Schiffels, S., Struck, T. J., Kelleher, J. & Thornton, K. R., 2022, In: Genetics. 222, 3, 9 p., iyac131.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Demographic variation in space and time: implications for conservation targeting
Morrison, C. A., Butler, S. J., Clark, J. A., Arizaga, J., Baltà, O., Cepák, J., Nebot, A. L., Piha, M., Thorup, Kasper, Wenninger, T., Robinson, R. A. & Gill, J. A., 2022, In: Royal Society Open Science. 9, 3, 211671.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Den bæredygtige stat i Jordens økosystem
Richardson, Katherine, 2022, In: Samfundsoekonomen. 2022, 2, p. 33-43 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detecting Selection in Multiple Populations by Modeling Ancestral Admixture Components
Cheng, J. Y., Stern, A. J., Racimo, Fernando & Nielsen, Rasmus, 2022, In: Molecular Biology and Evolution. 39, 1, 14 p., msab294.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detection of Neanderthal Adaptively Introgressed Genetic Variants That Modulate Reporter Gene Expression in Human Immune Cells
Jagoda, E., Xue, J. R., Reilly, S. K., Dannemann, M., Racimo, Fernando, Huerta-Sanchez, E., Sankararaman, S., Kelso, J., Pagani, L., Sabeti, P. C. & Capellini, T. D., 2022, In: Molecular Biology and Evolution. 39, 1, 20 p., msab304.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detection of community-wide impacts of bottom trawl fishing on deep-sea assemblages using environmental DNA metabarcoding
Good, E., Holman, Luke Earl, Pusceddu, A., Russo, T., Rius, M. & Iacono, C. L., 2022, In: Marine Pollution Bulletin. 183, 14 p., 114062.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Determination of the zirconium isotopic composition of the new isotopic standard NRC ZIRC-1 using MC-ICP-MS
Tian, S., Moynier, F., Inglis, E. C., Jensen, Ninna Korsgaard, Deng, Zhengbin, Schiller, Martin & Bizzarro, Martin, 2022, In: Journal of Analytical Atomic Spectrometry. 37, 3, p. 656-662 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deterministic assembly and anthropogenic extinctions drive convergence of island bird communities
Triantis, K. A., Rigal, F., Whittaker, R. J., Hume, J. P., Sheard, C., Poursanidis, D., Rolland, J., Sfenthourakis, S., Matthews, T. J., Thébaud, C. & Tobias, J. A., 2022, In: Global Ecology and Biogeography. 31, 9, p. 1741-1755 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Developing an outcomes-based approach to achieving Target 3 of the Global Biodiversity Framework
Dudley, N., Robinson, J. G., Andelman, S., Bingham, H. C., Conzo, L. A., Geldmann, J., Grorud-Colvert, K., Gurney, G. G., Hickey, V., Hockings, M., Jonas, H. D., Kettunen, M., Marnewick, D., Masozera, M., Mitchell, L. B., Parrish, J., Redford, K., Espinoza, A. R., Russi, D., Salafsky, N. & 6 others, , 2022, In: Parks. 28, 2, p. 33-44 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Development of a Phage Cocktail to Target Salmonella Strains Associated with Swine
Thanki, A. M., Clavijo, V., Healy, K., Wilkinson, R. C., Sicheritz-Pontén, Thomas, Millard, A. D. & Clokie, M. R. J., 2022, In: Pharmaceuticals. 15, 1, 19 p., 58.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Diet and environment of Mylodon darwinii based on pollen of a Late-Glacial coprolite from the Mylodon Cave in southern Chile
van Geel, B., van Leeuwen, J. F. N., Nooren, K., Mol, D., den Ouden, N., van der Knaap, P. W. O., Seersholm, Frederik Valeur, Rey de la Iglesia, Alba & Lorenzen, Eline, 2022, In: Review of Palaeobotany and Palynology. 296, 11 p., 104549.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Differential expression profiling of heat stressed tardigrades reveals major shift in the transcriptome
Neves, R. C., Møbjerg, A., Kodama, M., Ramos Madrigal, Jazmin, Gilbert, M Thomas P & Møbjerg, Nadja, 2022, In: Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology. 267, 7 p., 111169.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
DistAngsd: Fast and Accurate Inference of Genetic Distances for Next-Generation Sequencing Data
Zhao, Lei, Nielsen, Rasmus & Korneliussen, Thorfinn Sand, 2022, In: Molecular Biology and Evolution. 39, 6, 14 p., msac119.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Distance decay 2.0 – A global synthesis of taxonomic and functional turnover in ecological communities
Graco-Roza, C., Aarnio, S., Abrego, N., Acosta, A. T. R., Alahuhta, J., Altman, J., Angiolini, C., Aroviita, J., Attorre, F., Baastrup-Spohr, L., Barrera-Alba, J. J., Belmaker, J., Biurrun, I., Bonari, G., Bruelheide, H., Burrascano, S., Carboni, M., Cardoso, P., Carvalho, J. C., Castaldelli, G. & 72 others, , 2022, In: Global Ecology and Biogeography. 31, 7, p. 1399-1421 23 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Distinctive mitogenomic lineages within populations of White-tailed Eagles: [Inkl. Corrigendum]
Hansen, C. C. R., Baleka, S., Guðjónsdóttir, S. M., Rasmussen, Jacob Agerbo, Ballesteros, J. A. C., Hallgrimsson, G. T., Stefansson, R. A., von Schmalensee, M., Skarphedinsson, K. H., Labansen, A. L., Leivits, M., Skelmose, K., Sonne, C., Dietz, R., Boertmann, D., Eulaers, I., Martin, M. D. & Pálsson, S., 2022, In: Ornithology. 139, 2, 14 p., ukab081.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Diverse stakeholder perspectives and ecosystem services ranking: Application of the Q-methodology to Hawane Dam and Nature Reserve in Eswatini
Mahlalela, L. S., Jourdain, D., Mungatana, E. D. & Lundhede, Thomas, 2022, In: Ecological Economics. 197, 14 p., 107439.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Diversity, Dynamics and Therapeutic Application of Clostridioides difficile Bacteriophages
Nale, J. Y., Thanki, A. M., Rashid, S. J., Shan, J., Vinner, G. K., Dowah, A. S. A., Cheng, J. K. J., Sicheritz-Pontén, Thomas & Clokie, M. R. J., 2022, In: Viruses. 14, 12, 21 p., 2772.Research output: Contribution to journal › Review › Research › peer-review
- Published
Draft genome assemblies of four manakins
Li, X., Gao, R., Chen, G., Price, A. L., Øksnebjerg, Daniel Bilyeli, Hosner, Peter Andrew, Zhou, Y., KU, thw266 & Feng, S., 2022, In: Scientific Data. 9, 11 p., 564.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ENM2020: A FREE ONLINE COURSE AND SET OF RESOURCES ON MODELING SPECIES NICHES AND DISTRIBUTIONS
Peterson, A. T., Aiello-Lammens, M. E., Amatulli, G., Anderson, R. P., Cobos, M. E., Diniz-Filho, J. A. F., Escobar, L. E., Feng, X., Franklin, J., Gadelha, L. M. R., Georges, D., Guéguen, M., Gueta, T., Ingenloff, K., Jarvie, S., Jimenez, L., Karger, D. N., Kass, J. M., Kearney, M. R., Loyola, R. & 24 others, , 2022, In: Biodiversity Informatics. 17, p. 1-9 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Editorial
Welker, Frido, 2022, In: Journal of Proteomics. 253, 2 p., 104460.Research output: Contribution to journal › Editorial › Research › peer-review
- Published
Effect of pH on the Surface Layer of Molecular Crystals at the Solid-Liquid Interface
Herzberg, M., Larsen, A. S., Hassenkam, Tue, Madsen, Anders Østergaard & Rantanen, Jukka, 2022, In: Molecular Pharmaceutics. 19, 5, p. 1598–1603Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Efficient ancestry and mutation simulation with msprime 1.0
Baumdicker, F., Bisschop, G., Goldstein, D., Gower, G., Ragsdale, A. P., Tsambos, G., Zhu, S., Eldon, B., Ellerman, E. C., Galloway, J. G., Gladstein, A. L., Gorjanc, G., Guo, B., Jeffery, B., Kretzschumar, W. W., Lohse, K., Matschiner, M., Nelson, D., Pope, N. S., Quinto-Cortes, C. D. & 12 others, , 2022, In: Genetics. 220, 3, 19 p., iyab229.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Eksotisk møde i Forstbotanisk Have: Blødende Silkehat (Leucoagaricus georginae)
Læssøe, Thomas, 2022, In: Svampe. 85, p. 36-37, 42Research output: Contribution to journal › Journal article › Research
- Published
Elevated fires during COVID-19 lockdown and the vulnerability of protected areas
Eklund, J., Jones, J. P. G., Räsänen, M., Geldmann, Jonas, Jokinen, A. P., Pellegrini, A., Rakotobe, D., Rakotonarivo, O. S., Toivonen, T. & Balmford, A., 2022, In: Nature Sustainability. 5, 7, p. 603-609Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Emerging technologies revolutionise insect ecology and monitoring
van Klink, R., August, T., Bas, Y., Bodesheim, P., Bonn, A., Fossøy, F., Høye, T. T., Jongejans, E., Menz, M. H. M., Miraldo, A., Roslin, T., Roy, H. E., Ruczyński, I., Schigel, D., Schäffler, L., Sheard, J. K., Svenningsen, C., Tschan, G. F., Wäldchen, J., Zizka, V. M. A. & 2 others, , 2022, In: Trends in Ecology and Evolution. 37, 10, p. 872-885 14 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Empirical H/V spectral ratios at the InSight landing site and implications for the martian subsurface structure
Carrasco, S., Knapmeyer-Endrun, B., Margerin, L., Schmelzbach, C., Onodera, K., Pan, Lu, Lognonné, P., Menina, S., Giardini, D., Stutzmann, E., Clinton, J., Stähler, S., Schimmel, M., Golombek, M., Hobiger, M., Hallo, M., Kedar, S. & Banerdt, W. B., 2022, In: Geophysical Journal International. 232, 2, p. 1293-1310Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Enriching captivity conditions with natural elements does not prevent the loss of wild-like gut microbiota but shapes its compositional variation in two small mammals
Koziol, Adam Leslie, Larrañaga, Iñaki Odriozola, Jessen, Lasse Nyholm, Leonard, Aoife Mary, San Jose, C., Pauperio, J., Ferreira, C., Hansen, Anders Johannes, Aizpurua Arrieta, Ostaizka, Gilbert, M Thomas P & Alberdi, Antton, 2022, In: MicrobiologyOpen. 11, 5, 19 p., e1318.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Environmental DNA in human and veterinary parasitology - Current applications and future prospects for monitoring and control
Sengupta, Mita Eva, Lynggaard, Christina Islas, Mukaratirwa, S., Vennervald, Birgitte J & Stensgaard, Anna-Sofie, 2022, In: Food and Waterborne Parasitology. 29, 17 p., e00183.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating the relative proportions of SARS-CoV-2 haplotypes from wastewater samples
Pipes, L., Chen, Z., Afanaseva, S. & Nielsen, Rasmus, 2022, In: Cell Reports Methods. 2, 10, 100313.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating the timing of multiple admixture events using 3-locus linkage disequilibrium
Liang, M., Shishkin, M., Mikhailova, A., Shchur, V. & Nielsen, Rasmus, 2022, In: PLOS Genetics. 18, 7, 17 p., e1010281.Research output: Contribution to journal › Journal article › Research › peer-review
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Ancient Jomon genome sequence analysis sheds light on migration patterns of early East Asian populations
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Bucking the trend: The diversity of Anthropocene 'winners' among British moths
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IRON ISOTOPE EVIDENCE FOR VERY RAPID ACCRETION AND DIFFERENTIATION OF THE PROTO-EARTH.
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