Globe Institute

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  1. 2024
  2. Published

    Digesting the data: Proper validation in ancient metagenomic studies is essential

    Pach, Aleksandra Laura, Lanigan, Liam Thomas, Niemann, Jonas, Pedersen, Mikkel Winther & Schroeder, Hannes, 2024, bioRxiv, 9 p.

    Research output: Working paper › Preprint › Research

  3. 2023
  4. Published

    Assessing the validity of a calcifying oral biofilm model as a suitable proxy for dental calculus

    Bartholdy, B. P., Velsko, I. M., Gur-Arieh, S., Fagernäs, Zandra Selina, Warinner, C. & Henry, A. G., 2023, bioRxiv, 22 p.

    Research output: Working paper › Preprint › Research

  5. Published

    ClockstaRX: testing molecular clock hypotheses with genomic data

    Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2023, bioRxiv, 15 p.

    Research output: Working paper › Preprint › Research

  6. 2022
  7. Published

    Extensive inheritance of gut microbial communities in a superorganismal termite

    Sinotte, Veronica Marie, Renelies-Hamilton, J., Andreu-Sánchez, S., Vasseur-Cognet, M. & Poulsen, Michael, 30 Aug 2022, Research Square-Preprint, 34 p.

    Research output: Working paper › Preprint › Research

  8. Published

    Airborne environmental DNA captures terrestrial vertebrate diversity in nature

    Lynggaard, Christina Islas, Frøslev, Tobias Guldberg, Johnson, Matthew Stanley, Olsen, Morten Tange & Bohmann, Kristine, 2022, bioRxiv, 30 p.

    Research output: Working paper › Preprint › Research

  9. Published

    Genetic load and adaptive potential of a recovered avian species that narrowly avoided extinction

    Femerling Romero, Maria Georgette, Oosterhout, C. V., Feng, S., Bristol, R. M., KU, thw266, Groombridge, J., Gilbert, M Thomas P & Morales Villegas, Hernan Eduardo, 2022, bioRxiv, 23 p.

    Research output: Working paper › Preprint › Research

  10. Published

    Genetic risk for Multiple Sclerosis originated in Pastoralist Steppe populations

    Barrie, W., Yang, Y., Attfield, K. E., Irving-Pease, E., Scorrano, G., Jensen, L. T., Armen, A. P., Dimopoulos, E. A., Stern, A., Refoyo-Martínez, A., Ramsøe, A., Gaunitz, C., Demeter, F., Jørkov, M. L. S., Møller, S. B., Springborg, B., Klassen, L., Hyldgård, I. M., Wickmann, N., Vinner, L. & 9 others, Korneliussen, Thorfinn Sand, Sikora, Martin, Kristiansen, K., Rodriguez, S., Nielsen, Rasmus, Iversen, A. K. N., Lawson, D. J., Fugger, L. & Willerslev, Eske, 2022, bioRxiv, 55 p.

    Research output: Working paper › Preprint › Research

  11. Published

    Genomics reveals introgression and purging of deleterious mutations in the Arabian leopard (Panthera pardus nimr)

    Riaño, G., Fontsere, Claudia, de Manuel, M., Talavera, A., Burriel-Carranza, B., Tejero-Cicuéndez, H., AlGethami, R. H. M., Shobrak, M., Marques-Bonet, T. & Carranza, S., 2022, bioRxiv, 41 p.

    Research output: Working paper › Preprint › Research

  12. Published

    Imputation of ancient genomes

    da Mota, B. S., Rubinacci, S., Dávalos, D. I. C., Amorim, C. E. G., Sikora, Martin, Johannsen, N. N., Szmyt, M., Włodarczak, P., Szczepanek, A., Przybyła, M. M., Schroeder, Hannes, Allentoft, Morten Erik, Willerslev, Eske, Malaspinas, A. & Delaneau, O., 2022, bioRxiv, 34 p.

    Research output: Working paper › Preprint › Research

  13. Published

    PaleoProPhyler: a reproducible pipeline for phylogenetic inference using ancient proteins

    Patramanis, Ioannis, Ramos Madrigal, Jazmin, Cappellini, Enrico & Racimo, Fernando, 2022, bioRxiv, 6 p.

    Research output: Working paper › Preprint › Research

  14. Published

    Parchment Glutamine Index (PQI): A novel method to estimate glutamine deamidation levels in parchment collagen obtained from low-quality MALDI-TOF data

    Anila Bhuvanendran Nair, Bharath, Palomo, I. R., Markussen, Bo, Wiuf, Carsten, Fiddyment, S. & Collins, Matthew James, 2022, bioRxiv, 18 p.

    Research output: Working paper › Research › peer-review

  15. Published

    Planet Formation Theory in the Era of ALMA and Kepler: from Pebbles to Exoplanets

    Drazkowska, J., Bitsch, B., Lambrechts, Michiel Thomas A, Mulders, G. D., Harsono, D., Vazan, A., Liu, B., Ormel, C. W., Kretke, K. & Morbidelli, A., 2022, arXiv.org, 38 p.

    Research output: Working paper › Preprint › Research

  16. Published

    Population Genomics of Stone Age Eurasia

    Allentoft, M. E., Sikora, M., Refoyo-Martínez, A., Irving-Pease, E. K., Fischer, A., Barrie, W., Ingason, A., Stenderup, J., Sjögren, K-G., Pearson, A., Mota, B., Paulsson, B. S., Halgren, A., Macleod, R., Schjellerup Jørkov, M. L., Demeter, F., Novosolov, M., Sørensen, L., Nielsen, P-O., Henriksen, R. H. A. & 143 others, Vimala, Tharsika, McColl, Hugh, Margaryan, Ashot, Ilardo, M., Vaughn, A., Mortensen, M. F., Nielsen, A. B., Hede, M. U., Rasmussen, P., Vinner, Lasse, Renaud, Gabriel, Stern, A., Jensen, Theis Zetner Trolle, Johannsen, N. N., Scorrano, Gabriele, Schroeder, Hannes, Lysdahl, P., Ramsøe, Abigail Daisy, Skorobogatov, A., Schork, A. J., Rosengren, A., Ruter, Anthony Henry, Outram, A., Timoshenko, A. A., Buzhilova, A., Coppa, A., Zubova, A., Silva, A. M., Hansen, Anders Johannes, Gromov, A., Logvin, A., Gotfredsen, Anne Birgitte, Nielsen, B. H., González-Rabanal, B., Lalueza-Fox, C., McKenzie, C. J., Gaunitz, Charleen, Blasco, C., Liesau, C., Martinez-Labarga, C., Pozdnyakov, D. V., Cuenca-Solana, D., Lordkipanidze, D. O., En’shin, D., Salazar-García, D. C., Price, T. D., Borić, D., Kostyleva, E., Veselovskaya, E. V., Usmanova, E. R., Cappellini, Enrico, Petersen, Erik Brinch, Kannegaard, E., Radina, F., Yediay, Fulya Eylem, Duday, H., Gutiérrez-Zugasti, I., Potekhina, I., Shevnina, I., Altinkaya, Isin, Guilaine, J., Hansen, J., Tortosa, J. E. A., Zilhão, J., Vega, J., Pedersen, K. B., Tunia, K., Zhao, Lei, Mylnikova, L. N., Larsson, L., Metz, L., Yeppiskoposyan, L., Pedersen, L., Sarti, L., Orlando, L., Slimak, L., Klassen, L., Blank, M., González-Morales, M., Silvestrini, M., Vretemark, M., Nesterova, M. S., Rykun, M., Rolfo, M. F., Szmyt, M., Przybyła, M., Calattini, M., Sablin, M., Dobisíková, M., Meldgaard, Morten, Johansen, M., Berezina, N., Card, N., Saveliev, N. A., Poshekhonova, O., Rickards, O., Lozovskaya, O. V., Uldum, O. C., Aurino, P., Kosintsev, P., Courtaud, P., Ríos, P., Mortensen, P., Lotz, P., Persson, P. Å., Bangsgaard, Pernille, Damgaard, P. D. B., Petersen, P. V., Martinez, P. P., Włodarczak, P., Smolyaninov, R. V., Maring, R., Menduiña, R., Badalyan, R., Iversen, Rune, Turin, R., Vasilyiev, S., Wåhlin, S., Borutskaya, S., Skochina, S., Sørensen, S. A., Andersen, S. H., Jørgensen, T., Serikov, Y. B., Molodin, V. I., Smrcka, V., Merz, V., Appadurai, V., Moiseyev, V., Magnusson, Y., Kjær, Kurt H., Lynnerup, Niels, Lawson, D. J., Sudmant, P. H., Rasmussen, Simon, Korneliussen, Thorfinn Sand, Durbin, R., Nielsen, R., Delaneau, O., Werge, Thomas, Racimo, Fernando, Kristiansen, K. & Willerslev, Eske, 2022, p. 1-71, (bioRxiv).

    Research output: Working paper › Preprint › Research

  17. Published

    Population genomics of the island thrush elucidates one of earth’s great archipelagic radiations

    Hart Reeve, A., Gower, Graham, Pujolar, J. M., Smith, B. T., Petersen, Bent, Olsson, U., Haryoko, T., Koane, B., Maiah, G., Blom, M. P. K., Ericson, P. G. P., Irestedt, M., Racimo, Fernando & Jønsson, Knud Andreas, 2022, bioRxiv, 46 p.

    Research output: Working paper › Preprint › Research

  18. Published

    Species-specific traits mediate avian demographic responses under past climate change

    Germain, Ryan Ross, Feng, S., Chen, G., Graves, G. R., Tobias, J. A., Rahbek, Carsten, Lei, F., Fjeldså, Jon, Hosner, Peter Andrew, Gilbert, M Thomas P, KU, thw266 & Nogues, David Bravo, 2022, bioRxiv, 24 p.

    Research output: Working paper › Preprint › Research

  19. Published

    The Selection Landscape and Genetic Legacy of Ancient Eurasians

    Irving-Pease, E., Refoyo Martínez, A., Ingason, A., Pearson, A., Fischer, A., Barrie, W., Sjögren, K-G., Halgren, A. S., Macleod, R., Demeter, F., Henriksen, R. H. A., Vimala, T., McColl, H., Vaughn, A., Stern, A. J., Speidel, L., Scorrano, G., Ramsøe, A., Schork, A. J., Rosengren, A. & 12 others, Zhao, Lei, Kristiansen, K., Sudmant, P. H., Lawson, D. J., Durbin, R., Korneliussen, Thorfinn Sand, Werge, Thomas, Allentoft, Morten Erik, Sikora, Martin, Nielsen, Rasmus, Racimo, Fernando & Willerslev, Eske, 2022, bioRxiv, 26 p.

    Research output: Working paper › Preprint › Research

  20. Published

    slendr: a framework for spatio-temporal population genomic simulations on geographic landscapes

    Petr, Martin, Haller, B. C., Ralph, P. L. & Racimo, Fernando, 2022, bioRxiv, 27 p.

    Research output: Working paper › Preprint › Research

  21. 2021
  22. Published

    The pangenome of the fungal pathogen Neonectria neomacrospora

    Nielsen, Knud Nor, Sirén, K., Petersen, Bent, Sicheritz-Pontén, Thomas, Gilbert, M Thomas P, Korneliussen, Thorfinn Sand & Hansen, Ole Kim, 12 Mar 2021, 30 p. (bioRxiv).

    Research output: Working paper › Preprint › Research

  23. Published

    Functional repertoire convergence of distantly related eukaryotic plankton lineages revealed by genome-resolved metagenomics

    Delmont, T. O., Gaia, M., Hinsinger, D. D., Fremont, P., Vanni, C., Fernandez Guerra, A., Eren, A. M., Kourlaiev, A., d'Agata, L., Clayssen, Q., Villar, E., Labadie, K., Cruaud, C., Poulain, J., Da Silva, C., Wessner, M., Noel, B., Aury, J-M., de Vargas, C., Bowler, C. & 4 others, Karsenti, E., Pelletier, E., Wincker, P. & Jaillon, O., 23 Jan 2021, 30 p. (bioRxiv).

    Research output: Working paper › Preprint › Research

  24. Published

    A comparison of tools for copy-number variation detection in germline whole exome and whole genome sequencing data

    Gabrielaite, M., Torp, M., Rasmussen, M., Andreu-Sánchez, S., Vieira, Filipe Garrett, Pedersen, C., Kinalis, S., Madsen, M., Yde, C., Rønn, O. L., Marvig, R., Østrup, O., Rossing, Caroline Maria, Nielsen, Finn Cilius, Winther, Ole & Bagger, F. O., 2021, bioRxiv, 29 p.

    Research output: Working paper › Preprint › Research

  25. Published

    Conserving rhinos by legal trade: Insights from a choice experiment on rhino horn consumers

    Dang, V. H. N., Nielsen, Martin Reinhardt & Jacobsen, Jette Bredahl, 2021, EcoEvoRxiv, 30 p. (EcoEvoRxiv Preprints).

    Research output: Working paper › Research

  26. Published

    Mining metagenomes for natural product biosynthetic gene clusters: unlocking new potential with ultrafast techniques

    Pereira-Flores, E., Medema, M., Buttigieg, P. L., Meinicke, P., Glöckner, F. O. & Fernandez Guerra, Antonio, 2021, 29 p. (bioRxiv).

    Research output: Working paper › Preprint › Research

  27. Published

    Towards the extended barcode concept: Generating DNA reference data through genome skimming of danish plants

    Chua, Physilia, Leerhøi, Frederik, Arfaoui, Emilia Marie Rolander, Margaryan, Ashot, Noer, Christina, Richter, S. R., Restrup, M. E., Bruun, Hans Henrik, Hartvig, Ida, Coissac, E., Boessenkool, S., Alsos, I. G. & Bohmann, Kristine, 2021, 38 p. (bioRxiv).

    Research output: Working paper › Preprint › Research

  28. 2020
  29. Published

    Simple attributes predict the importance of plants as hosts to the richness of fungi and arthropods

    Bruun, Hans Henrik, Brunbjerg, A. K., Dalby, L., Fløjgaard, C., Frøslev, Tobias Guldberg, Haarder, S., Heilmann-Clausen, Jacob, Høye, T. T., Læssøe, Thomas & Ejrnæs, R., 18 Apr 2020, bioRxiv, 27 p. (bioRxiv).

    Research output: Working paper › Preprint › Research

  30. Published

    A global indicator of utilised wildlife populations: regional trends and the impact of management

    McRae, L., Freeman, R., Geldmann, Jonas, Moss, G. B., Kjær-Hansen, L. & Burgess, Neil David, 2020, 30 p. (bioRxiv).

    Research output: Working paper › Preprint › Research

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