Visualizing ribonuclease digestion of RNA-like polymers produced by hot wet-dry cycles

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Polymerization of nucleotides under prebiotic conditions simulating the early Earth has been extensively studied. Several independent methods have been used to verify that RNA-like polymers can be produced by hot wet-dry cycling of nucleotides. However, it has not been shown that these RNA-like polymers are similar to biological RNA with 3′-5′ phosphodiester bonds. In the results described here, RNA-like polymers were generated from 5′-monophosphate nucleosides AMP and UMP. To confirm that the polymers resemble biological RNA, ribonuclease A should catalyze hydrolysis of the 3′-5′ phosphodiester bonds between pyrimidine nucleotides to each other or to purine nucleotides, but not purine-purine nucleotide bonds. Here we show AFM images of specific polymers produced by hot wet-dry cycling of AMP, UMP and AMP/UMP (1:1) solutions on mica surfaces, before and after exposure to ribonuclease A. AMP polymers were unaffected by ribonuclease A but UMP polymers disappeared. This indicates that a major fraction of the bonds in the UMP polymers is indeed 3′-5′ phosphodiester bonds. Some of the polymers generated from the AMP/UMP mixture also showed clear signs of cleavage. Because ribonuclease A recognizes the ester bonds in the polymers, we show for the first time that these prebiotically produced polymers are in fact similar to biological RNA but are likely to be linked by a mixture of 3′-5′ and 2′-5′ phosphodiester bonds.

Original languageEnglish
Article number149938
JournalBiochemical and Biophysical Research Communications
Volume712-713
Number of pages6
ISSN0006-291X
DOIs
Publication statusPublished - 2024

Bibliographical note

Funding Information:
This work was supported by grant NNF21OC0068372 under the Novo Nordisk foundation NERD program.

Publisher Copyright:
© 2024 The Authors

    Research areas

  • 3′-5′ phosphodiester bonds, Hydrothermal fields, RNA synthesis, RNA world hypothesis

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