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  1. Published

    Measuring the impact of parchment production on skin collagen stable isotope (δ13C and δ15N) values

    Doherty, S., Alexander, M. M., Vnoucek, J., Newton, J. & Collins, Matthew James, 2021, In: STAR: Science & Technology of Archaeological Research. 7, 1, p. 1-12 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    A modern baseline for the paired isotopic analysis of skin and bone in terrestrial mammals

    Doherty, S. P., Collins, Matthew James, Harris, A. J. T., Sistiaga Gutierrez, Maria Ainara, Newton, J. & Alexander, M. M., 2022, In: Royal Society Open Science. 9, 1, 11 p., 211587.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Tracking the British agricultural revolution through the isotopic analysis of dated parchment

    Doherty, S. P., Alexander, M. M., Henderson, S., Newton, J., Finch, J. & Collins, Matthew James, 2023, In: Scientific Reports. 13, 7 p., 61.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Scratching the surface: the use of sheepskin parchment to deter textual erasure in early modern legal deeds

    Doherty, S. P., Henderson, S., Fiddyment, S., Finch, J. & Collins, Matthew James, 2021, In: Heritage Science. 9, 1, 6 p., 29.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. E-pub ahead of print

    The relationship between 11 different polygenic longevity scores, parental lifespan, and disease diagnosis in the UK Biobank

    Don, J., Schork, A. J., Glusman, G., Rappaport, N., Cummings, S. R., Duggan, D., Raju, A., Hellberg, K. G., Gunn, S., Monti, S., Perls, T., Lapidus, J., Goetz, L. H., Sebastiani, P. & Schork, N. J., 2024, (E-pub ahead of print) In: GeroScience. 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Impact of water level change on shifts in subsistence regimes revealed by anthropogenic fire in the lower Yangtze basin during the Mid-Holocene

    Dong, H., Chen, Z., Wang, Yucheng, Chen, J., Zhang, Zhiping, Shen, Z., Yan, X. & Liu, J., 2024, In: Palaeogeography, Palaeoclimatology, Palaeoecology. 633, 17 p., 111902.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Genome-wide re-sequencing reveals the adaptive potential of European ash (Fraxinus excelsior)

    Doonan, J., Budde, K. B., Lobo, A., Kosawang, C., Verbylaite, R., Pliura, A., Ulaszewski, B., Thomas, K., Konrad, H., Jørgensen, H. J. L., Seegmüller, S., Liziniewicz, M., Cleary, M., Nemesio-Gorriz, M., Fussi, B., Kirisits, T., Gilbert, M. T. P., Martin, M., Heuertz, M., Kjær, E. D. & 1 others, Nielsen, L. R., 2022, 7th IUFRO International Workshop on the Genetics of Tree-Parasite Interactions in Forestry: Book of abstracts: GTPI 2022. IUFRO, p. 49 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research

  8. Published

    Planet Formation Theory in the Era of ALMA and Kepler: from Pebbles to Exoplanets

    Drazkowska, J., Bitsch, B., Lambrechts, Michiel Thomas A, Mulders, G. D., Harsono, D., Vazan, A., Liu, B., Ormel, C. W., Kretke, K. & Morbidelli, A., 2022, arXiv.org, 38 p.

    Research output: Working paper › Preprint › Research

  9. Published

    Leech blood-meal invertebrate-derived DNA reveals differences in Bornean mammal diversity across habitats

    Drinkwater, R., Jucker, T., Potter, J. H. T., Swinfield, T., Coomes, D. A., Slade, E. M., Gilbert, M Thomas P, Lewis, O. T., Bernard, H., Struebig, M. J., Clare, E. L. & Rossiter, S. J., 2021, In: Molecular Ecology. 30, 13, p. 3299-3312 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Using metabarcoding to compare the suitability of two blood-feeding leech species for sampling mammalian diversity in North Borneo

    Drinkwater, R., Schnell, I. B., Bohmann, Kristine, Bernard, H., Veron, G., Clare, E., Gilbert, M Thomas P & Rossiter, S. J., 2019, In: Molecular Ecology Resources. 19, 1, p. 105-117

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Excluding Loci With Substitution Saturation Improves Inferences From Phylogenomic Data

    Duchene, David, Mather, N., Van Der Wal, C. & Ho, S. Y. W., 2022, In: Systematic Biology. 71, 3, p. 676-689

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    ClockstaRX: Testing Molecular Clock Hypotheses With Genomic Data

    Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2024, In: Genome Biology and Evolution. 16, 4, 7 p., evae064.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    ClockstaRX: testing molecular clock hypotheses with genomic data

    Duchene, David, Duchêne, S., Stiller, Josefin, Heller, Rasmus & Ho, S. Y. W., 2023, bioRxiv, 15 p.

    Research output: Working paper › Preprint › Research

  14. Published

    Phylogenomics

    Duchene, David, 11 Oct 2021, In: Current Biology. 31, 19, p. R1177-R1181 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Developing an outcomes-based approach to achieving Target 3 of the Global Biodiversity Framework

    Dudley, N., Robinson, J. G., Andelman, S., Bingham, H. C., Conzo, L. A., Geldmann, J., Grorud-Colvert, K., Gurney, G. G., Hickey, V., Hockings, M., Jonas, H. D., Kettunen, M., Marnewick, D., Masozera, M., Mitchell, L. B., Parrish, J., Redford, K., Espinoza, A. R., Russi, D., Salafsky, N. & 6 others, Springer, J., Sullivan-Stack, J., Tugendhat, H., Watson, J. E. M., Wilkie, D. S. & Woodley, S., 2022, In: Parks. 28, 2, p. 33-44 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Snow mediates climatic impacts on Arctic herbivore populations

    Duncan, R. J., Andrew, M. E. & Forchhammer, M. C., 2021, In: Polar Biology. 44, 7, p. 1251-1271 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    The Internal, External and Extended Microbiomes of Hominins

    Dunn, Rob, Amato, K. R., Archie, E. A., Arandjelovic, M., Crittenden, A. N. & Nichols, L. M., 2020, In: Frontiers in Ecology and Evolution. 8, 12 p., 25.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    A Theory of City Biogeography and the Origin of Urban Species

    Dunn, Rob, Burger, J. R., Carlen, E. J., Koltz, A. M., Light, J. E., Martin, R. A., Munshi-South, J., Nichols, L. M., Vargo, E. L., Yitbarek, S., Zhao, Y. & Cibrián-Jaramillo, A., 2022, In: Frontiers in Conservation Science. 3, 18 p., 761449.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Toward a Global Ecology of Fermented Foods

    Dunn, Rob, Wilson, J., Nichols, L. M. & Gavin, M. C., 2021, In: Current Anthropology. 62, S24, p. S220-S232

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Sweetness, Power, Yeasts and Entomo-terroir

    Dunn, Rob, Sanchez, M. C. & Booker, M. M., 2022, Animals, Plants and Afterimages: The Art and Science of Representing Extinction. Bienvenue, V. & Chare, N. (eds.). Berghahn Books, p. 286-300 15 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  21. Published

    Lateral transfers of large DNA fragments spread functional genes among grasses

    Dunning, L. T., Olofsson, Jill Katharina, Parisod, C., Choudhury, R. R., Moreno-Villena, J. J., Yang, Y., Dionora, J., Quick, W. P., Park, M., Bennetzen, J. L., Besnard, G., Nosil, P., Osborne, C. P. & Christin, P., 5 Mar 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 10, p. 4416-4425

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Observer performance and the effect of ambiguous taxon identification for fixed strip-width dugong aerial surveys

    Dunshea, G., Groom, R. & Griffiths, A. D., 2020, In: Journal of Experimental Marine Biology and Ecology. 526, 12 p., 151338.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    A practical approach to measuring the biodiversity impacts of land conversion

    Durán, A. P., Green, J. M. H., West, C. D., Visconti, P., Burgess, Neil David, Virah-Sawmy, M. & Balmford, A., 2020, In: Methods in Ecology and Evolution. 11, 8, p. 910-921 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Purging and accumulation of genetic load in conservation

    Dussex, N., Morales Villegas, Hernan Eduardo, Grossen, C., Dalén, L. & van Oosterhout, C., 2023, In: Trends in Ecology and Evolution. 38, 10, p. 961-969 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Population genomics of the critically endangered kākāpō

    Dussex, N., van der Valk, T., Morales, H. E., Wheat, C. W., Díez-del-Molino, D., von Seth, J., Foster, Y., Kutschera, V. E., Guschanski, K., Rhie, A., Phillippy, A. M., Korlach, J., Howe, K., Chow, W., Pelan, S., Mendes Damas, J. D., Lewin, H. A., Hastie, A. R., Formenti, G., Fedrigo, O. & 20 others, Guhlin, J., Harrop, T. W. R., Le Lec, M. F., Dearden, P. K., Haggerty, L., Martin, F. J., Kodali, V., Thibaud-Nissen, F., Iorns, D., Knapp, M., Gemmell, N. J., Robertson, F., Moorhouse, R., Digby, A., Eason, D., Vercoe, D., Howard, J., Jarvis, E. D., Robertson, B. C. & Dalén, L., 2021, In: Cell Genomics. 1, 1, 20 p., 100002.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Adaptation to the High-Arctic island environment despite long-term reduced genetic variation in Svalbard reindeer

    Dussex, N., Tørresen, O. K., van der Valk, T., Le Moullec, M., Veiberg, V., Tooming-Klunderud, A., Skage, M., Garmann-Aarhus, B., Wood, J., Rasmussen, Jacob Agerbo, Pedersen, Å. Ø., Martin, S. L. F., Røed, K. H., Jakobsen, K. S., Dalén, L., Hansen, B. B. & Martin, M. D., 2023, In: iScience. 26, 10, 16 p., 107811.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    A new stratigraphic framework for the Miocene – Lower Pliocene deposits offshore Scandinavia: A multiscale approach

    Dybkjær, K., Rasmussen, E. S., Eidvin, T., Grøsfjeld, K., Riis, F., Piasecki, Stefan & Sliwinska, K. K., 2021, In: Geological Journal. 56, p. 1699-1725

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Ancient DNA reveals the lost domestication history of south american camelids in Northern Chile and across the andes

    Díaz-Maroto, P., Rey de la Iglesia, Alba, Cartajena, I., Núñez, L., Westbury, Michael Vincent, Varas, V., Moraga, M., Campos, P. F., Orozco-terWenge, P., Marín, J. C. & Hansen, Anders Johannes, 2021, In: eLife. 10, e63390.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Genomics of adaptive evolution in the woolly mammoth

    Díez-del-Molino, D., Dehasque, M., Chacón-Duque, J. C., Chrzanová Pecnerová, Patrícia, Tikhonov, A., Protopopov, A., Plotnikov, V., Kanellidou, F., Nikolskiy, P., Mortensen, P., Danilov, G. K., Vartanyan, S., Gilbert, M Thomas P, Lister, A. M., Heintzman, P. D., van der Valk, T. & Dalén, L., 2023, In: Current Biology. 33, 9, 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Adventurous cuisine in Laos: Hebeloma parvisporum, a new species in Hebeloma section Porphyrospora

    Eberhardt, U., Beker, H. J., Schütz, N., Pedersen, O. S., Sysouphanthong, P. & Læssøe, Thomas, 2020, In: Mycologia. 112, 1, p. 172-184

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Molecular biogeography of the fungus-dwelling saproxylic beetle Bolitophagus reticulatus indicates rapid expansion from glacial refugia

    Eberle, J., Husemann, M., Doerfler, I., Ulrich, W., Müller, J., Bouget, C., Brin, A., Gossner, M. M., Heilmann-Clausen, Jacob, Isacsson, G., Krištín, A., Lachat, T., Larrieu, L., Rigling, A., Schmidl, J., Seibold, S., Vandekerkhove, K. & Habel, J. C., 2021, In: Biological Journal of the Linnean Society. 133, 3, p. 766-778 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Marine environmental DNA: Approaches, applications, and opportunities

    Eble, J. A., Daly-Engel, T. S., DiBattista, J. D., Koziol, Adam Leslie & Gaither, M. R., 2020, Advances in Marine Biology. Sheppard, C. (ed.). Elsevier, p. 141-169 29 p. (Advances in Marine Biology, Vol. 86).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  33. Published

    Observational learning in food choices: The effect of product familiarity and closeness of peers

    Edenbrandt, A. K., Gamborg, Christian & Thorsen, Bo Jellesmark, 2020, In: Agribusiness. 36, 3, p. 482-498 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    A Baltic Perspective on the Early to Early Late Ordovician δ13C and δ18O Records and Its Paleoenvironmental Significance

    Edward, O., Korte, Christoph, Ullmann, C. V., Colmenar, J., Thibault, Nicolas Rudolph, Bagnoli, G., Stouge, Svend & Rasmussen, Christian Mac Ørum, Mar 2022, In: Paleoceanography and Paleoclimatology. 37, 3, 26 p., e2021PA004309.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Upper Cambrian to Upper Ordovician δ13C and δ18O stratigraphy of the western Baltic palaeobasin, Öland, Sweden: A closer look at climate during the onset of the Ordovician Radiation

    Edward, O., Korte, Christoph, Ullmann, C. V., Colmenar, J., Nielsen, M., Stouge, Svend & Rasmussen, Christian Mac Ørum, 2017, p. A-389.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  36. Published

    Genomic Steppe ancestry in skeletons from the Neolithic Single Grave Culture in Denmark

    Egfjord, A. F., Margaryan, Ashot, Fischer, A., Sjögren, K., Price, T. D., Johannsen, N. N., Nielsen, P. O., Sørensen, L., Willerslev, Eske, Iversen, Rune, Sikora, Martin, Kristiansen, K. & Allentoft, Morten Erik, 2021, In: P L o S One. 16, 1, p. 1-21

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics

    Eisenhofer Philipona, Raphael A, Nesme, J., Santos-Bay, Luisa, Koziol, Adam Leslie, Sørensen, Søren Johannes, Alberdi, Antton & Aizpurua Arrieta, Ostaizka, 2024, In: Microbiology Spectrum. 12, 4, 14 p., e03590-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Impact of microbial genome completeness on metagenomic functional inference

    Eisenhofer Philipona, Raphael A, Larrañaga, Iñaki Odriozola & Alberdi, Antton, 2023, In: ISME communications. 3, 5 p., 12.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Benchmarking a targeted 16S ribosomal RNA gene enrichment approach to reconstruct ancient microbial communities

    Eisenhofer Philipona, Raphael A, Wright, S. & Weyrich, L., 2024, In: PeerJ. 12, 24 p., e16770.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Nesting Synchrony and Clutch Size in Migratory Birds: Capital versus Income Breeding Determines Responses to Variable Spring Onset

    Ejsmond, A., Forchhammer, M., Varpe, Ø., Jónsson, J. E. & Jørgensen, C., 2021, In: American Naturalist. 198, 4, p. E122-E135

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Elevated fires during COVID-19 lockdown and the vulnerability of protected areas

    Eklund, J., Jones, J. P. G., Räsänen, M., Geldmann, Jonas, Jokinen, A. P., Pellegrini, A., Rakotobe, D., Rakotonarivo, O. S., Toivonen, T. & Balmford, A., 2022, In: Nature Sustainability. 5, 7, p. 603-609

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Genome-wide study of early and severe childhood asthma identifies interaction between CDHR3 and GSDMB

    Eliasen, A. U., Pedersen, C. E. T., Rasmussen, M. A., Wang, N., Soverini, M., Fritz, A., Stokholm, J., Chawes, B. L., Morin, A., Bork-Jensen, J., Grarup, N., Pedersen, O., Hansen, T., Linneberg, A., Mortensen, P. B., Hougaard, D. M., Bybjerg-Grauholm, J., Bækvad-Hansen, M., Mors, O., Nordentoft, M. & 14 others, Børglum, A. D., Werge, Thomas, Agerbo, E., Söderhall, C., Altman, M. C., Thysen, A. H., McKennan, C. G., Brix, Susanne, Gern, J. E., Ober, C., Ahluwalia, Tarun Veer Singh, Bisgaard, H., Pedersen, A. G. & Bønnelykke, Klaus, 2022, In: Journal of Allergy and Clinical Immunology. 150, 3, p. 622-630

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Human Population Genomics in Northern Europe in the past 2000 years

    Ellegaard, M. R., 2023, GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen. 250 p.

    Research output: Book/Report › Ph.D. thesis › Research

  44. Published

    Do large-scale associations in birds imply biotic interactions or environmental filtering?

    Elo, M., Kajanus, M. H., Tolvanen, J., Devictor, V., Forsman, J. T., Lehikoinen, A., Monkkonen, M., Thorson, J. T., Vollstädt, Max & Kivela, S. M., 2023, In: Journal of Biogeography. 50, 1, p. 169-182 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    The role of divers’ experience for their valuation of diving site conservation: The case of Sipadan, Borneo

    Emang, D., Lundhede, Thomas & Thorsen, Bo Jellesmark, 2020, In: Journal of Outdoor Recreation and Tourism. 32, 12 p., 100237.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    The commonness of rarity: global and future distribution of rarity across land plants

    Enquist, B. J., Feng, X., Boyle, B., Maitner, B., Newman, E. A., Jørgensen, P. M., Roehrdanz, P. R., Thiers, B. M., Burger, J. R., Corlett, R. T., Couvreur, T. L. P., Dauby, G., Donoghue, J. C., Foden, W., Lovett, J. C., Marquet, P. A., Merow, C., Midgley, G., Morueta-Holme, N., Neves, D. M. & 15 others, Oliveira-Filho, A. T., Kraft, N. J. B., Park, D. S., Peet, R. K., Pillet, M., Serra-Diaz, J. M., Sandel, B., Schildhauer, M., Šímová, I., Violle, C., Wieringa, J. J., Wiser, S. K., Hannah, L., Svenning, J. C. & McGill, B. J., 2019, In: Science Advances. 5, 11, 14 p., eaaz0414.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Community-led, integrated, reproducible multi-omics with anvi'o

    Eren, A. M., Kiefl, E., Shaiber, A., Veseli, I., Miller, S. E., Schechter, M. S., Fink, I., Pan, J. N., Yousef, M., Fogarty, E. C., Trigodet, F., Watson, A. R., Esen, O. C., Moore, R. M., Clayssen, Q., Lee, M. D., Kivenson, V., Graham, E. D., Merrill, B. D., Karkman, A. & 14 others, Blankenberg, D., Eppley, J. M., Sjodin, A., Scott, J. J., Vazquez-Campos, X., McKay, L. J., McDaniel, E. A., Stevens, S. L. R., Anderson, R. E., Fuessel, J., Fernandez Guerra, Antonio, Maignien, L., Delmont, T. O. & Willis, A. D., 2021, In: Nature Microbiology. 6, 1, p. 3-6 4 p.

    Research output: Contribution to journal › Editorial › Research › peer-review

  48. Published

    Rapid loss of endogenous DNA in pig bone buried in five different environments

    Eriksen, A. M. H., Matthiesen, H., Kontopoulos, I., Gregory, D., Snoeck, C., KU, thw266, Collins, Matthew James & Gilbert, M Thomas P, 2020, In: Archaeometry. 62, 4, p. 827-846 20 p.

    Research output: Contribution to journal › Review › Research › peer-review

  49. Published

    Bone Diagenesis: The effect of depositional environments on bone degradation

    Eriksen, A. M. H., 2019, Natural History Museum of Denmark, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  50. Published

    Releasing the microbes from old bones: the effect of different DNA extraction protocols on microbial community profiling

    Eriksen, A. M. H., Puetz, Lara Christine, Rocha, C., Nielsen, Tue Kjærgaard, Hansen, Lars Hestbjerg & Gilbert, M Thomas P, 2020, In: STAR: Science & Technology of Archaeological Research. 6, 1, p. 1-15 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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