Standard
Authentication and assessment of contamination in ancient DNA. / Renaud, Gabriel; Schubert, Mikkel; Sawyer, Susanna; Orlando, Ludovic.
Ancient DNA: Methods and Protocols. ed. / Beth Shapiro; Axel Barlow; Peter D. Heintzman; Michael Hofreiter; Johanna L. A. Paijmans; André E. R. Soares. 2. ed. ed. Humana Press, 2019. p. 163-194 (Methods in Molecular Biology, Vol. 1963).
Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Harvard
Renaud, G, Schubert, M, Sawyer, S & Orlando, L 2019,
Authentication and assessment of contamination in ancient DNA. in B Shapiro, A Barlow, PD Heintzman, M Hofreiter, JLA Paijmans & AER Soares (eds),
Ancient DNA: Methods and Protocols. 2. ed. edn, Humana Press, Methods in Molecular Biology, vol. 1963, pp. 163-194.
https://doi.org/10.1007/978-1-4939-9176-1_17
APA
Renaud, G., Schubert, M., Sawyer, S., & Orlando, L. (2019).
Authentication and assessment of contamination in ancient DNA. In B. Shapiro, A. Barlow, P. D. Heintzman, M. Hofreiter, J. L. A. Paijmans, & A. E. R. Soares (Eds.),
Ancient DNA: Methods and Protocols (2. ed. ed., pp. 163-194). Humana Press. Methods in Molecular Biology Vol. 1963
https://doi.org/10.1007/978-1-4939-9176-1_17
Vancouver
Renaud G, Schubert M, Sawyer S, Orlando L.
Authentication and assessment of contamination in ancient DNA. In Shapiro B, Barlow A, Heintzman PD, Hofreiter M, Paijmans JLA, Soares AER, editors, Ancient DNA: Methods and Protocols. 2. ed. ed. Humana Press. 2019. p. 163-194. (Methods in Molecular Biology, Vol. 1963).
https://doi.org/10.1007/978-1-4939-9176-1_17
Author
Renaud, Gabriel ; Schubert, Mikkel ; Sawyer, Susanna ; Orlando, Ludovic. / Authentication and assessment of contamination in ancient DNA. Ancient DNA: Methods and Protocols. editor / Beth Shapiro ; Axel Barlow ; Peter D. Heintzman ; Michael Hofreiter ; Johanna L. A. Paijmans ; André E. R. Soares. 2. ed. ed. Humana Press, 2019. pp. 163-194 (Methods in Molecular Biology, Vol. 1963).
Bibtex
@inbook{bd473e7dde9c4a7e965535ed64a45372,
title = "Authentication and assessment of contamination in ancient DNA",
abstract = "Contamination from both present-day humans and postmortem microbial sources is a common challenge in ancient DNA studies. Here we present a suite of tools to assist in the assessment of contamination in ancient DNA data sets. These tools perform standard tests of authenticity of ancient DNA data including detecting the presence of postmortem damage signatures in sequence alignments and quantifying the amount of present-day human contamination.",
keywords = "Ancient DNA, Contamination, DICE, mapDamage2.0, Postmortem damage, Schmutzi",
author = "Gabriel Renaud and Mikkel Schubert and Susanna Sawyer and Ludovic Orlando",
year = "2019",
doi = "10.1007/978-1-4939-9176-1_17",
language = "English",
isbn = " 978-1-4939-9175-4",
series = "Methods in Molecular Biology",
publisher = "Humana Press",
pages = "163--194",
editor = "Beth Shapiro and Axel Barlow and Heintzman, {Peter D.} and Michael Hofreiter and Paijmans, {Johanna L. A.} and Soares, {Andr{\'e} E. R.}",
booktitle = "Ancient DNA",
address = "United States",
edition = "2. ed.",
}
RIS
TY - CHAP
T1 - Authentication and assessment of contamination in ancient DNA
AU - Renaud, Gabriel
AU - Schubert, Mikkel
AU - Sawyer, Susanna
AU - Orlando, Ludovic
PY - 2019
Y1 - 2019
N2 - Contamination from both present-day humans and postmortem microbial sources is a common challenge in ancient DNA studies. Here we present a suite of tools to assist in the assessment of contamination in ancient DNA data sets. These tools perform standard tests of authenticity of ancient DNA data including detecting the presence of postmortem damage signatures in sequence alignments and quantifying the amount of present-day human contamination.
AB - Contamination from both present-day humans and postmortem microbial sources is a common challenge in ancient DNA studies. Here we present a suite of tools to assist in the assessment of contamination in ancient DNA data sets. These tools perform standard tests of authenticity of ancient DNA data including detecting the presence of postmortem damage signatures in sequence alignments and quantifying the amount of present-day human contamination.
KW - Ancient DNA
KW - Contamination
KW - DICE
KW - mapDamage2.0
KW - Postmortem damage
KW - Schmutzi
U2 - 10.1007/978-1-4939-9176-1_17
DO - 10.1007/978-1-4939-9176-1_17
M3 - Book chapter
C2 - 30875054
AN - SCOPUS:85063003614
SN - 978-1-4939-9175-4
T3 - Methods in Molecular Biology
SP - 163
EP - 194
BT - Ancient DNA
A2 - Shapiro, Beth
A2 - Barlow, Axel
A2 - Heintzman, Peter D.
A2 - Hofreiter, Michael
A2 - Paijmans, Johanna L. A.
A2 - Soares, André E. R.
PB - Humana Press
ER -
