The first complete mitochondrial genome data of Hippocampus kuda originating from Malaysia
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The first complete mitochondrial genome data of Hippocampus kuda originating from Malaysia. / Jahari, Puteri Nur Syahzanani; Malik, Nur Fatihah Abdul; Shamsir, Mohd Shahir; Gilbert, M. Thomas P.; Salleh, Faezah Mohd.
In: Data in Brief, Vol. 31, 105721, 2020.Research output: Contribution to journal › Journal article › Research › peer-review
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T1 - The first complete mitochondrial genome data of Hippocampus kuda originating from Malaysia
AU - Jahari, Puteri Nur Syahzanani
AU - Malik, Nur Fatihah Abdul
AU - Shamsir, Mohd Shahir
AU - Gilbert, M. Thomas P.
AU - Salleh, Faezah Mohd
PY - 2020
Y1 - 2020
N2 - The spotted seahorse, Hippocampus kuda population is exponentially decreasing globally due to habitat loss contributed by massive coastal urbanization as well as its large exploitation for Chinese herbal medicine. Genomic data would be highly useful to improve biomonitoring of seahorse populations in Malaysia via the usage of non-invasive approaches such as water environmental DNA. Here we report the first complete mitogenome of two H. kuda individuals originating from Malaysia, generated using BGISEQ-500RS sequencer. The lengths of both mitogenomes are 16,529bp, consisting of 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and a control region. The overall base composition was 32.46% for A, 29.40% for T, 14.73% for G and 23.41% for C with AT rich features (61.86%). The gene organization of Malaysian H. kuda were similar to that of most teleost species. A phylogenetic analysis of the genome against mtDNA data from other Hippocampus species showed that Malaysian H. kuda samples clustered with H. capensis, H. reidi and H. kuda. Notably however, analysis of the data using BLASTn revealed they had 99.18% similarity to H. capensis, and only 97.66% to H. kuda and H. reidi, which are all part of the unresolved H. kuda complex. The mitogenomes are deposited in Genbank under the accession number MT221436 (HK1) and MT221436 (HK2). (C) 2020 The Author(s). Published by Elsevier Inc.
AB - The spotted seahorse, Hippocampus kuda population is exponentially decreasing globally due to habitat loss contributed by massive coastal urbanization as well as its large exploitation for Chinese herbal medicine. Genomic data would be highly useful to improve biomonitoring of seahorse populations in Malaysia via the usage of non-invasive approaches such as water environmental DNA. Here we report the first complete mitogenome of two H. kuda individuals originating from Malaysia, generated using BGISEQ-500RS sequencer. The lengths of both mitogenomes are 16,529bp, consisting of 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and a control region. The overall base composition was 32.46% for A, 29.40% for T, 14.73% for G and 23.41% for C with AT rich features (61.86%). The gene organization of Malaysian H. kuda were similar to that of most teleost species. A phylogenetic analysis of the genome against mtDNA data from other Hippocampus species showed that Malaysian H. kuda samples clustered with H. capensis, H. reidi and H. kuda. Notably however, analysis of the data using BLASTn revealed they had 99.18% similarity to H. capensis, and only 97.66% to H. kuda and H. reidi, which are all part of the unresolved H. kuda complex. The mitogenomes are deposited in Genbank under the accession number MT221436 (HK1) and MT221436 (HK2). (C) 2020 The Author(s). Published by Elsevier Inc.
KW - Hippocampus kuda
KW - mitogenome
KW - H. kuda clade
KW - SEQUENCE
KW - ALIGNMENT
KW - ACCURATE
U2 - 10.1016/j.dib.2020.105721
DO - 10.1016/j.dib.2020.105721
M3 - Journal article
C2 - 32490085
VL - 31
JO - Data in Brief
JF - Data in Brief
SN - 2352-3409
M1 - 105721
ER -
ID: 255101437