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The Global Soil Mycobiome consortium dataset for boosting fungal diversity research. / Tedersoo, Leho; Mikryukov, Vladimir; Anslan, Sten; Bahram, Mohammad; Khalid, Abdul Nasir; Corrales, Adriana; Agan, Ahto; Vasco-Palacios, Aída M.; Saitta, Alessandro; Antonelli, Alexandre; Rinaldi, Andrea C.; Verbeken, Annemieke; Sulistyo, Bobby P.; Tamgnoue, Boris; Furneaux, Brendan; Ritter, Camila Duarte; Nyamukondiwa, Casper; Sharp, Cathy; Marín, César; Dai, D. Q.; Gohar, Daniyal; Sharmah, Dipon; Biersma, Elisabeth Machteld; Cameron, Erin K.; De Crop, Eske; Otsing, Eveli; Davydov, Evgeny A.; Albornoz, Felipe E.; Brearley, Francis Q.; Buegger, Franz; Gates, Genevieve; Zahn, Geoffrey; Bonito, Gregory; Hiiesalu, Indrek; Hiiesalu, Inga; Zettur, Irma; Barrio, Isabel C.; Pärn, Jaan; Heilmann-Clausen, Jacob; Ankuda, Jelena; Kupagme, John Y.; Sarapuu, Joosep; Maciá-Vicente, Jose G.; Fovo, Joseph Djeugap; Geml, József; Alatalo, Juha M.; Alvarez-Manjarrez, Julieta; Monkai, Jutamart; Põldmaa, Kadri; Runnel, Kadri; Adamson, Kalev; Bråthen, Kari A.; Pritsch, Karin; Tchan, Kassim I.; Armolaitis, Kęstutis; Hyde, Kevin D.; Newsham, Kevin K.; Panksep, Kristel; Adebola, Lateef A.; Lamit, Louis J.; Saba, Malka; da Silva Cáceres, Marcela E.; Tuomi, Maria; Gryzenhout, Marieka; Bauters, Marijn; Bálint, Miklós; Wijayawardene, Nalin; Hagh-Doust, Niloufar; Yorou, Nourou S.; Kurina, Olavi; Mortimer, Peter E.; Meidl, Peter; Nilsson, R. Henrik; Puusepp, Rasmus; Casique-Valdés, Rebeca; Drenkhan, Rein; Garibay-Orijel, Roberto; Godoy, Roberto; Alfarraj, Saleh; Rahimlou, Saleh; Põlme, Sergei; Dudov, Sergey V.; Mundra, Sunil; Ahmed, Talaat; Netherway, Tarquin; Henkel, Terry W.; Roslin, Tomas; Fedosov, Vladimir E.; Onipchenko, Vladimir G.; Yasanthika, W. A. Erandi; Lim, Young Woon; Piepenbring, Meike; Klavina, Darta; Kõljalg, Urmas; Abarenkov, Kessy.
In:
Fungal Diversity, Vol. 111, No. 1, 2021, p. 573-588.
Research output: Contribution to journal › Journal article › Research › peer-review
Harvard
Tedersoo, L, Mikryukov, V, Anslan, S, Bahram, M, Khalid, AN, Corrales, A, Agan, A, Vasco-Palacios, AM, Saitta, A, Antonelli, A, Rinaldi, AC, Verbeken, A, Sulistyo, BP, Tamgnoue, B, Furneaux, B, Ritter, CD, Nyamukondiwa, C, Sharp, C, Marín, C, Dai, DQ, Gohar, D, Sharmah, D
, Biersma, EM, Cameron, EK, De Crop, E, Otsing, E, Davydov, EA, Albornoz, FE, Brearley, FQ, Buegger, F, Gates, G, Zahn, G, Bonito, G, Hiiesalu, I, Hiiesalu, I, Zettur, I, Barrio, IC, Pärn, J
, Heilmann-Clausen, J, Ankuda, J, Kupagme, JY, Sarapuu, J, Maciá-Vicente, JG, Fovo, JD, Geml, J, Alatalo, JM, Alvarez-Manjarrez, J, Monkai, J, Põldmaa, K, Runnel, K, Adamson, K, Bråthen, KA, Pritsch, K, Tchan, KI, Armolaitis, K, Hyde, KD, Newsham, KK, Panksep, K, Adebola, LA, Lamit, LJ, Saba, M, da Silva Cáceres, ME, Tuomi, M, Gryzenhout, M, Bauters, M, Bálint, M, Wijayawardene, N, Hagh-Doust, N, Yorou, NS, Kurina, O, Mortimer, PE, Meidl, P, Nilsson, RH, Puusepp, R, Casique-Valdés, R, Drenkhan, R, Garibay-Orijel, R, Godoy, R, Alfarraj, S, Rahimlou, S, Põlme, S, Dudov, SV, Mundra, S, Ahmed, T, Netherway, T, Henkel, TW, Roslin, T, Fedosov, VE, Onipchenko, VG, Yasanthika, WAE, Lim, YW, Piepenbring, M, Klavina, D, Kõljalg, U & Abarenkov, K 2021, '
The Global Soil Mycobiome consortium dataset for boosting fungal diversity research',
Fungal Diversity, vol. 111, no. 1, pp. 573-588.
https://doi.org/10.1007/s13225-021-00493-7APA
Tedersoo, L., Mikryukov, V., Anslan, S., Bahram, M., Khalid, A. N., Corrales, A., Agan, A., Vasco-Palacios, A. M., Saitta, A., Antonelli, A., Rinaldi, A. C., Verbeken, A., Sulistyo, B. P., Tamgnoue, B., Furneaux, B., Ritter, C. D., Nyamukondiwa, C., Sharp, C., Marín, C., ... Abarenkov, K. (2021).
The Global Soil Mycobiome consortium dataset for boosting fungal diversity research.
Fungal Diversity,
111(1), 573-588.
https://doi.org/10.1007/s13225-021-00493-7Vancouver
Tedersoo L, Mikryukov V, Anslan S, Bahram M, Khalid AN, Corrales A et al.
The Global Soil Mycobiome consortium dataset for boosting fungal diversity research.
Fungal Diversity. 2021;111(1):573-588.
https://doi.org/10.1007/s13225-021-00493-7Author
Tedersoo, Leho ; Mikryukov, Vladimir ; Anslan, Sten ; Bahram, Mohammad ; Khalid, Abdul Nasir ; Corrales, Adriana ; Agan, Ahto ; Vasco-Palacios, Aída M. ; Saitta, Alessandro ; Antonelli, Alexandre ; Rinaldi, Andrea C. ; Verbeken, Annemieke ; Sulistyo, Bobby P. ; Tamgnoue, Boris ; Furneaux, Brendan ; Ritter, Camila Duarte ; Nyamukondiwa, Casper ; Sharp, Cathy ; Marín, César ; Dai, D. Q. ; Gohar, Daniyal ; Sharmah, Dipon ; Biersma, Elisabeth Machteld ; Cameron, Erin K. ; De Crop, Eske ; Otsing, Eveli ; Davydov, Evgeny A. ; Albornoz, Felipe E. ; Brearley, Francis Q. ; Buegger, Franz ; Gates, Genevieve ; Zahn, Geoffrey ; Bonito, Gregory ; Hiiesalu, Indrek ; Hiiesalu, Inga ; Zettur, Irma ; Barrio, Isabel C. ; Pärn, Jaan ; Heilmann-Clausen, Jacob ; Ankuda, Jelena ; Kupagme, John Y. ; Sarapuu, Joosep ; Maciá-Vicente, Jose G. ; Fovo, Joseph Djeugap ; Geml, József ; Alatalo, Juha M. ; Alvarez-Manjarrez, Julieta ; Monkai, Jutamart ; Põldmaa, Kadri ; Runnel, Kadri ; Adamson, Kalev ; Bråthen, Kari A. ; Pritsch, Karin ; Tchan, Kassim I. ; Armolaitis, Kęstutis ; Hyde, Kevin D. ; Newsham, Kevin K. ; Panksep, Kristel ; Adebola, Lateef A. ; Lamit, Louis J. ; Saba, Malka ; da Silva Cáceres, Marcela E. ; Tuomi, Maria ; Gryzenhout, Marieka ; Bauters, Marijn ; Bálint, Miklós ; Wijayawardene, Nalin ; Hagh-Doust, Niloufar ; Yorou, Nourou S. ; Kurina, Olavi ; Mortimer, Peter E. ; Meidl, Peter ; Nilsson, R. Henrik ; Puusepp, Rasmus ; Casique-Valdés, Rebeca ; Drenkhan, Rein ; Garibay-Orijel, Roberto ; Godoy, Roberto ; Alfarraj, Saleh ; Rahimlou, Saleh ; Põlme, Sergei ; Dudov, Sergey V. ; Mundra, Sunil ; Ahmed, Talaat ; Netherway, Tarquin ; Henkel, Terry W. ; Roslin, Tomas ; Fedosov, Vladimir E. ; Onipchenko, Vladimir G. ; Yasanthika, W. A. Erandi ; Lim, Young Woon ; Piepenbring, Meike ; Klavina, Darta ; Kõljalg, Urmas ; Abarenkov, Kessy. / The Global Soil Mycobiome consortium dataset for boosting fungal diversity research. In: Fungal Diversity. 2021 ; Vol. 111, No. 1. pp. 573-588.
Bibtex
@article{fbe40f33aa82442989edc060975eae70,
title = "The Global Soil Mycobiome consortium dataset for boosting fungal diversity research",
abstract = "Fungi are highly important biotic components of terrestrial ecosystems, but we still have a very limited understanding about their diversity and distribution. This data article releases a global soil fungal dataset of the Global Soil Mycobiome consortium (GSMc) to boost further research in fungal diversity, biogeography and macroecology. The dataset comprises 722,682 fungal operational taxonomic units (OTUs) derived from PacBio sequencing of full-length ITS and 18S-V9 variable regions from 3200 plots in 108 countries on all continents. The plots are supplied with geographical and edaphic metadata. The OTUs are taxonomically and functionally assigned to guilds and other functional groups. The entire dataset has been corrected by excluding chimeras, index-switch artefacts and potential contamination. The dataset is more inclusive in terms of geographical breadth and phylogenetic diversity of fungi than previously published data. The GSMc dataset is available over the PlutoF repository.",
keywords = "Fungal richness, Global dataset, PacBio sequencing, Soil fungi",
author = "Leho Tedersoo and Vladimir Mikryukov and Sten Anslan and Mohammad Bahram and Khalid, {Abdul Nasir} and Adriana Corrales and Ahto Agan and Vasco-Palacios, {A{\'i}da M.} and Alessandro Saitta and Alexandre Antonelli and Rinaldi, {Andrea C.} and Annemieke Verbeken and Sulistyo, {Bobby P.} and Boris Tamgnoue and Brendan Furneaux and Ritter, {Camila Duarte} and Casper Nyamukondiwa and Cathy Sharp and C{\'e}sar Mar{\'i}n and Dai, {D. Q.} and Daniyal Gohar and Dipon Sharmah and Biersma, {Elisabeth Machteld} and Cameron, {Erin K.} and {De Crop}, Eske and Eveli Otsing and Davydov, {Evgeny A.} and Albornoz, {Felipe E.} and Brearley, {Francis Q.} and Franz Buegger and Genevieve Gates and Geoffrey Zahn and Gregory Bonito and Indrek Hiiesalu and Inga Hiiesalu and Irma Zettur and Barrio, {Isabel C.} and Jaan P{\"a}rn and Jacob Heilmann-Clausen and Jelena Ankuda and Kupagme, {John Y.} and Joosep Sarapuu and Maci{\'a}-Vicente, {Jose G.} and Fovo, {Joseph Djeugap} and J{\'o}zsef Geml and Alatalo, {Juha M.} and Julieta Alvarez-Manjarrez and Jutamart Monkai and Kadri P{\~o}ldmaa and Kadri Runnel and Kalev Adamson and Br{\aa}then, {Kari A.} and Karin Pritsch and Tchan, {Kassim I.} and K{\c e}stutis Armolaitis and Hyde, {Kevin D.} and Newsham, {Kevin K.} and Kristel Panksep and Adebola, {Lateef A.} and Lamit, {Louis J.} and Malka Saba and {da Silva C{\'a}ceres}, {Marcela E.} and Maria Tuomi and Marieka Gryzenhout and Marijn Bauters and Mikl{\'o}s B{\'a}lint and Nalin Wijayawardene and Niloufar Hagh-Doust and Yorou, {Nourou S.} and Olavi Kurina and Mortimer, {Peter E.} and Peter Meidl and Nilsson, {R. Henrik} and Rasmus Puusepp and Rebeca Casique-Vald{\'e}s and Rein Drenkhan and Roberto Garibay-Orijel and Roberto Godoy and Saleh Alfarraj and Saleh Rahimlou and Sergei P{\~o}lme and Dudov, {Sergey V.} and Sunil Mundra and Talaat Ahmed and Tarquin Netherway and Henkel, {Terry W.} and Tomas Roslin and Fedosov, {Vladimir E.} and Onipchenko, {Vladimir G.} and Yasanthika, {W. A. Erandi} and Lim, {Young Woon} and Meike Piepenbring and Darta Klavina and Urmas K{\~o}ljalg and Kessy Abarenkov",
note = "Publisher Copyright: {\textcopyright} 2021, MUSHROOM RESEARCH FOUNDATION.",
year = "2021",
doi = "10.1007/s13225-021-00493-7",
language = "English",
volume = "111",
pages = "573--588",
journal = "Fungal Diversity",
issn = "1560-2745",
publisher = "Springer",
number = "1",
}
RIS
TY - JOUR
T1 - The Global Soil Mycobiome consortium dataset for boosting fungal diversity research
AU - Tedersoo, Leho
AU - Mikryukov, Vladimir
AU - Anslan, Sten
AU - Bahram, Mohammad
AU - Khalid, Abdul Nasir
AU - Corrales, Adriana
AU - Agan, Ahto
AU - Vasco-Palacios, Aída M.
AU - Saitta, Alessandro
AU - Antonelli, Alexandre
AU - Rinaldi, Andrea C.
AU - Verbeken, Annemieke
AU - Sulistyo, Bobby P.
AU - Tamgnoue, Boris
AU - Furneaux, Brendan
AU - Ritter, Camila Duarte
AU - Nyamukondiwa, Casper
AU - Sharp, Cathy
AU - Marín, César
AU - Dai, D. Q.
AU - Gohar, Daniyal
AU - Sharmah, Dipon
AU - Biersma, Elisabeth Machteld
AU - Cameron, Erin K.
AU - De Crop, Eske
AU - Otsing, Eveli
AU - Davydov, Evgeny A.
AU - Albornoz, Felipe E.
AU - Brearley, Francis Q.
AU - Buegger, Franz
AU - Gates, Genevieve
AU - Zahn, Geoffrey
AU - Bonito, Gregory
AU - Hiiesalu, Indrek
AU - Hiiesalu, Inga
AU - Zettur, Irma
AU - Barrio, Isabel C.
AU - Pärn, Jaan
AU - Heilmann-Clausen, Jacob
AU - Ankuda, Jelena
AU - Kupagme, John Y.
AU - Sarapuu, Joosep
AU - Maciá-Vicente, Jose G.
AU - Fovo, Joseph Djeugap
AU - Geml, József
AU - Alatalo, Juha M.
AU - Alvarez-Manjarrez, Julieta
AU - Monkai, Jutamart
AU - Põldmaa, Kadri
AU - Runnel, Kadri
AU - Adamson, Kalev
AU - Bråthen, Kari A.
AU - Pritsch, Karin
AU - Tchan, Kassim I.
AU - Armolaitis, Kęstutis
AU - Hyde, Kevin D.
AU - Newsham, Kevin K.
AU - Panksep, Kristel
AU - Adebola, Lateef A.
AU - Lamit, Louis J.
AU - Saba, Malka
AU - da Silva Cáceres, Marcela E.
AU - Tuomi, Maria
AU - Gryzenhout, Marieka
AU - Bauters, Marijn
AU - Bálint, Miklós
AU - Wijayawardene, Nalin
AU - Hagh-Doust, Niloufar
AU - Yorou, Nourou S.
AU - Kurina, Olavi
AU - Mortimer, Peter E.
AU - Meidl, Peter
AU - Nilsson, R. Henrik
AU - Puusepp, Rasmus
AU - Casique-Valdés, Rebeca
AU - Drenkhan, Rein
AU - Garibay-Orijel, Roberto
AU - Godoy, Roberto
AU - Alfarraj, Saleh
AU - Rahimlou, Saleh
AU - Põlme, Sergei
AU - Dudov, Sergey V.
AU - Mundra, Sunil
AU - Ahmed, Talaat
AU - Netherway, Tarquin
AU - Henkel, Terry W.
AU - Roslin, Tomas
AU - Fedosov, Vladimir E.
AU - Onipchenko, Vladimir G.
AU - Yasanthika, W. A. Erandi
AU - Lim, Young Woon
AU - Piepenbring, Meike
AU - Klavina, Darta
AU - Kõljalg, Urmas
AU - Abarenkov, Kessy
N1 - Publisher Copyright:
© 2021, MUSHROOM RESEARCH FOUNDATION.
PY - 2021
Y1 - 2021
N2 - Fungi are highly important biotic components of terrestrial ecosystems, but we still have a very limited understanding about their diversity and distribution. This data article releases a global soil fungal dataset of the Global Soil Mycobiome consortium (GSMc) to boost further research in fungal diversity, biogeography and macroecology. The dataset comprises 722,682 fungal operational taxonomic units (OTUs) derived from PacBio sequencing of full-length ITS and 18S-V9 variable regions from 3200 plots in 108 countries on all continents. The plots are supplied with geographical and edaphic metadata. The OTUs are taxonomically and functionally assigned to guilds and other functional groups. The entire dataset has been corrected by excluding chimeras, index-switch artefacts and potential contamination. The dataset is more inclusive in terms of geographical breadth and phylogenetic diversity of fungi than previously published data. The GSMc dataset is available over the PlutoF repository.
AB - Fungi are highly important biotic components of terrestrial ecosystems, but we still have a very limited understanding about their diversity and distribution. This data article releases a global soil fungal dataset of the Global Soil Mycobiome consortium (GSMc) to boost further research in fungal diversity, biogeography and macroecology. The dataset comprises 722,682 fungal operational taxonomic units (OTUs) derived from PacBio sequencing of full-length ITS and 18S-V9 variable regions from 3200 plots in 108 countries on all continents. The plots are supplied with geographical and edaphic metadata. The OTUs are taxonomically and functionally assigned to guilds and other functional groups. The entire dataset has been corrected by excluding chimeras, index-switch artefacts and potential contamination. The dataset is more inclusive in terms of geographical breadth and phylogenetic diversity of fungi than previously published data. The GSMc dataset is available over the PlutoF repository.
KW - Fungal richness
KW - Global dataset
KW - PacBio sequencing
KW - Soil fungi
U2 - 10.1007/s13225-021-00493-7
DO - 10.1007/s13225-021-00493-7
M3 - Journal article
AN - SCOPUS:85120358779
VL - 111
SP - 573
EP - 588
JO - Fungal Diversity
JF - Fungal Diversity
SN - 1560-2745
IS - 1
ER -
