Thorfinn Sand Korneliussen
Associate Professor
Section for Geogenetics
Øster Voldgade 5-7
1350 København K
- 2024
- Published
100 ancient genomes show repeated population turnovers in Neolithic Denmark
Allentoft, M. E., Sikora, M., Fischer, A., Sjögren, K-G., Ingason, A., Macleod, R., Rosengren, A., Schulz Paulsson, B., Jørkov, M. L. S., Novosolov, M., Stenderup, J., Price, T. D., Mortensen, M. F., Nielsen, A. B., Hede, M. U., Sørensen, L., Nielsen, P. O., Rasmussen, P., Jensen, T. Z. T., Refoyo-Martínez, A. & 48 others, , 2024, In: Nature. 625, 7994, p. 329-337 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Population genomics of post-glacial western Eurasia
Allentoft, M. E., Sikora, M., Refoyo-Martínez, A., Irving-Pease, E. K., Fischer, A., Barrie, W., Ingason, A., Stenderup, J., Sjögren, K-G., Pearson, A., da Mota, B. S., Paulsson, B. S., Halgren, A., Macleod, R., Jørkov, M. L. S., Demeter, F., Sørensen, L., Nielsen, P. O., Henriksen, R. A., Vimala, T. & 144 others, , 2024, In: Nature. 625, 7994, p. 301-311Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Elevated genetic risk for multiple sclerosis emerged in steppe pastoralist populations
Barrie, W., Yang, Y., Irving-Pease, E. K., Attfield, K. E., Scorrano, G., Jensen, L. T., Armen, A. P., Dimopoulos, E. A., Stern, A., Refoyo-Martinez, A., Pearson, A., Ramsøe, A., Gaunitz, C., Demeter, F., Jørkov, M. L. S., Møller, S. B., Springborg, B., Klassen, L., Hyldgård, I. M., Wickmann, N. & 11 others, , 2024, In: Nature. 625, 7994, p. 321-328Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
NGSNGS: next-generation simulator for next-generation sequencing data
Henriksen, Rasmus Henrik Amund, Zhao, Lei & Korneliussen, Thorfinn Sand, 2023, In: Bioinformatics. 39, 1, 2 p., btad041.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The transcriptional and regulatory identity of erythropoietin producing cells
Kragesteen, B. K., Giladi, A., David, E., Halevi, S., Geirsdóttir, L., Lempke, O. M., Li, B., Bapst, A. M., Xie, K., Katzenelenbogen, Y., Dahl, S. L., Sheban, F., Gurevich-Shapiro, A., Zada, M., Phan, T. S., Avellino, R., Wang, S-Y., Barboy, O., Shlomi-Loubaton, S., Winning, S. & 15 others, , 2023, In: Nature Medicine. 29, 5, p. 1191-1200Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA
Kjær, K. H., Pedersen, M. W., De Sanctis, B., De Cahsan, B., Korneliussen, T. S., Michelsen, C. S., Sand, K. K., Jelavić, S., Ruter, A. H., Schmidt, A. M. A., Kjeldsen, K. K., Tesakov, A. S., Snowball, I., Gosse, J. C., Alsos, I. G., Wang, Y., Dockter, C., Rasmussen, M., Jørgensen, M. E., Skadhauge, B. & 19 others, , 2022, In: Nature. 612, 7939, p. 283-291 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fast and accurate estimation of multidimensional site frequency spectra from low-coverage high-throughput sequencing data
Mas-Sandoval, A., Pope, N. S., Nielsen, Knud Nor, Altinkaya, Isin, Fumagalli, M. & Korneliussen, Thorfinn Sand, 2022, In: GigaScience. 11, 9 p., giac032.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Modeling the spatiotemporal spread of beneficial alleles using ancient genomes
Muktupavela, Rasa Audange, Petr, Martin, Ségurel, L., Korneliussen, Thorfinn Sand, Novembre, J. & Racimo, Fernando, 2022, In: eLife. 11, 33 p., e73767.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The formation of avian montane diversity across barriers and along elevational gradients
Pujolar, J. M., Blom, M. P. K., Hart Reeve, A., Kennedy, J. D., Marki, P. Z., Korneliussen, Thorfinn Sand, Freeman, B. G., Sam, K., Linck, E., Haryoko, T., Iova, B., Koane, B., Maiah, G., Paul, L., Irestedt, M. & Jønsson, Knud Andreas, 2022, In: Nature Communications. 13, 13 p., 268.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimation of site frequency spectra from low-coverage sequencing data using stochastic EM reduces overfitting, runtime, and memory usage
Rasmussen, Malthe Sebro, Garcia Erill, Genís, Korneliussen, Thorfinn Sand, Wiuf, Carsten & Albrechtsen, Anders, 2022, In: Genetics. 222, 4, 15 p., iyac148.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
LocalNgsRelate: a software tool for inferring IBD sharing along the genome between pairs of individuals from low-depth NGS data
Severson, A. L., Korneliussen, Thorfinn Sand & Moltke, Ida, 2022, In: Bioinformatics. 38, 4, p. 1159-1161 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
ngsLCA — A toolkit for fast and flexible lowest common ancestor inference and taxonomic profiling of metagenomic data
Wang, Yucheng, Korneliussen, Thorfinn Sand, Holman, Luke Earl, Manica, A. & Pedersen, Mikkel Winther, 2022, In: Methods in Ecology and Evolution. 13, 12, p. 2699-2708 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Reply to: When did mammoths go extinct?
Wang, Y., Prohaska, A., Dong, H., Alberti, A., Alsos, I. G., Beilman, D. W., Bjørk, A. A., Cao, J., Cherezova, A. A., Coissac, E., De Sanctis, B., Denoeud, F., Dockter, C., Durbin, R., Edwards, M. E., Edwards, N. R., Esdale, J., Fedorov, G. B., Fernandez-Guerra, A., Froese, D. G. & 32 others, , 2022, In: Nature. 612, 7938, p. E4-E6Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
DistAngsd: Fast and Accurate Inference of Genetic Distances for Next-Generation Sequencing Data
Zhao, Lei, Nielsen, Rasmus & Korneliussen, Thorfinn Sand, 2022, In: Molecular Biology and Evolution. 39, 6, 14 p., msac119.Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
A reference-free approach to analyse RADseq data using standard next generation sequencing toolkits
Heller, Rasmus, Nursyifa, Casia, Garcia Erill, Genís, Salmona, J., Chikhi, L., Meisner, Jonas, Korneliussen, Thorfinn Sand & Albrechtsen, Anders, 2021, In: Molecular Ecology Resources. 21, 4, p. 1085-1097 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Extensive Genome-Wide Phylogenetic Discordance Is Due to Incomplete Lineage Sorting and Not Ongoing Introgression in a Rapidly Radiated Bryophyte Genus
Meleshko, O., Martin, M. D., Korneliussen, Thorfinn Sand, Schröck, C., Lamkowski, P., Schmutz, J., Healey, A., Piatkowski, B. T., Shaw, A. J., Weston, D. J., Flatberg, K. I., Szövényi, P., Hassel, K. & Stenøien, H. K., 2021, In: Molecular Biology and Evolution. 38, 7, p. 2750-2766 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identifying a living great-grandson of the Lakota Sioux leader Tatanka Iyotake (Sitting Bull)
Moltke, Ida, Korneliussen, Thorfinn Sand, Seguin-Orlando, A., Moreno Mayar, J. Víctor, LaPointe, E., Billeck, W. & Willerslev, Eske, 2021, In: Science Advances. 7, 44, 7 p., eabh2013.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Late Quaternary dynamics of Arctic biota from ancient environmental genomics: [+ Correction]
Wang, Y., Pedersen, M. W., Alsos, I. G., De Sanctis, B., Racimo, F., Prohaska, A., Coissac, E., Owens, H. L., Merkel, M. K. F., Fernandez-Guerra, A., Rouillard, A., Lammers, Y., Alberti, A., Denoeud, F., Money, D., Ruter, A. H., McColl, H., Larsen, N. K., Cherezova, A. A., Edwards, M. E. & 30 others, , 2021, In: Nature. 600, 7887, p. 86–92 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
- Published
Targeted conservation genetics of the endangered chimpanzee
Frandsen, P., Fontsere, C., Nielsen, S. V., Hanghøj, Kristian Ebbesen, Castejon-Fernandez, N., Lizano, E., Hughes, D., Hernandez-Rodriguez, J., Korneliussen, Thorfinn Sand, Carlsen, F., Siegismund, Hans Redlef, Mailund, T., Marques-Bonet, T. & Hvilsom, C., 2020, In: Heredity. 125, 1-2, p. 15-27 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ancient Jomon genome sequence analysis sheds light on migration patterns of early East Asian populations
Gakuhari, T., Nakagome, S., Rasmussen, S., Allentoft, M. E., Sato, T., Korneliussen, T., Chuinneagain, B. N., Matsumae, H., Koganebuchi, K., Schmidt, R., Mizushima, S., Kondo, O., Shigehara, N., Yoneda, M., Kimura, R., Ishida, H., Masuyama, T., Yamada, Y., Tajima, A., Shibata, H. & 8 others, , 2020, In: Communications Biology . 3, 1, 10 p., 437.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Population genomics of the Viking world: [incl. correction]
Margaryan, A., Lawson, D. J., Sikora, M., Racimo, F., Rasmussen, S., Moltke, I., Cassidy, L. M., Jørsboe, E., Ingason, A., Pedersen, M. W., Korneliussen, T., Wilhelmson, H., Buś, M. M., de Barros Damgaard, P., Martiniano, R., Renaud, G., Bhérer, C., Moreno-Mayar, J. V., Fotakis, A. K., Allen, M. & 30 others, , 2020, In: Nature. 585, 7825, p. 390-396 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data
Moreno-Mayar, J. V., Korneliussen, Thorfinn Sand, Dalal, J., Renaud, Gabriel, Albrechtsen, Anders, Nielsen, Rasmus & Malaspinas, A., 2020, In: Bioinformatics. 36, 3, p. 828-841 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
Fast and accurate relatedness estimation from high-throughput sequencing data in the presence of inbreeding
Hanghøj, Kristian Ebbesen, Moltke, Ida, Andersen, P. A., Manica, A. & Korneliussen, Thorfinn Sand, May 2019, In: GigaScience. 8, 5, 9 p., giz034.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Human Disease Variation in the Light of Population Genomics
Prohaska, Ana, Racimo, Fernando, Schork, A. J., Sikora, Martin, Stern, A. J., Ilardo, M., Allentoft, Morten Erik, Folkersen, L., Buil, A., Moreno Mayar, J. Víctor, Korneliussen, Thorfinn Sand, Geschwind, D., Ingason, A., Werge, Thomas, Nielsen, Rasmus & Willerslev, Eske, 2019, In: Cell. 177, 1, p. 115-131 17 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples
Renaud, Gabriel, Hanghøj, Kristian Ebbesen, Korneliussen, Thorfinn Sand, Willerslev, Eske & Orlando, L., 2019, In: Genetics (Print). 212, 3, p. 587-614 28 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 41892155
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Natural selection affects multiple aspects of genetic variation at putatively peutral sites across the human genome
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SNP calling, genotype calling, and sample allele frequency estimation from new-generation sequencing data
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Calculation of Tajima's D and other neutrality test statistics from low depth next-generation sequencing data
Research output: Contribution to journal › Journal article › Research › peer-review
Published