Tom Gilbert

Tom Gilbert

Professor

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    ORCID: 0000-0002-5805-7195

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    1. Published

      Hvad er hologenomik?

      Spile, M. B., Gilbert, M Thomas P & Noer, Christina, 2023, In: Kaskelot. 245, p. 12-18

      Research output: Contribution to journal › Journal article › Communication

    2. Published

      Complexity of avian evolution revealed by family-level genomes

      Stiller, J., Feng, S., Chowdhury, A-A., Rivas-González, I., Duchêne, D. A., Fang, Q., Deng, Y., Kozlov, A., Stamatakis, A., Claramunt, S., Nguyen, J. M. T., Ho, S. Y. W., Faircloth, B. C., Haag, J., Houde, P., Cracraft, J., Balaban, M., Mai, U., Chen, G., Gao, R. & 32 others, Zhou, C., Xie, Y., Huang, Z., Cao, Z., Yan, Z., Ogilvie, H. A., Nakhleh, L., Lindow, Bent Erik Kramer, Morel, B., Fjeldså, Jon, Hosner, Peter Andrew, Rodrigues da Fonseca, Rute Andreia, Petersen, Bent, Tobias, J. A., Székely, T., Kennedy, J. D., Hart Reeve, A., Liker, A., Stervander, M., Antunes, A., Tietze, D. T., Bertelsen, Mads Frost, Lei, F., Rahbek, Carsten, Graves, G. R., Schierup, M. H., Warnow, T., Braun, E. L., Gilbert, M Thomas P, Jarvis, E. D., Mirarab, S. & KU, thw266, 2024, In: Nature. 629, p. 851–860 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      Transcriptomes of the desiccation-tolerant resurrection plant Craterostigma plantagineum

      Suarez Rodriguez, M. C., Edsgärd, D., Hussain, S. S., Alquezar Planas, D. E., Rasmussen, M., Gilbert, M Thomas P, Nielsen, B. H., Bartels, D. & Mundy, J., Jul 2010, In: The Plant Journal. 63, 2, p. 212-228 17 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      Genomic evidence refutes the hypothesis that the Bornean banteng is a distinct species

      Sun, Xin, Ciucani, M. M., Rasmussen, Jacob Agerbo, Gilbert, M Thomas P & Sinding, Mikkel Holger Strander, 2022, In: BMC Ecology and Evolution. 22, 4 p., 110.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Ancient DNA reveals genetic admixture in China during tiger evolution

      Sun, X., Liu, Y. C., Tiunov, M. P., Gimranov, D. O., Zhuang, Y., Han, Y., Driscoll, C. A., Pang, Y., Li, C., Pan, Y., Velasco, M. S., Gopalakrishnan, S., Yang, R. Z., Li, B. G., Jin, K., Xu, X., Uphyrkina, O., Huang, Y., Wu, X. H., Gilbert, M. T. P. & 3 others, O’Brien, S. J., Yamaguchi, N. & Luo, S., 2023, In: Nature Ecology and Evolution. 7, 11, p. 1914-1929 29 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum)

      Sánchez-Barreiro, F., Gopalakrishnan, Shyam, Ramos Madrigal, Jazmin, Westbury, Michael Vincent, de Manuel, M., Margaryan, Ashot, Ciucani, M. M., Vieira, Filipe Garrett, Patramanis, Ioannis, Kalthoff, D. C., Timmons, Z., Sicheritz-Pontén, Thomas, Dalén, L., Ryder, O. A., KU, thw266, Marques-Bonet, T., Moodley, Y. & Gilbert, M Thomas P, 2021, In: Molecular Ecology. 30, 23, p. 6355-6369 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      Historic Sampling of a Vanishing Beast: Population Structure and Diversity in the Black Rhinoceros

      Sánchez-Barreiro, F., Westbury, Binia De Cahsan, Westbury, Michael Vincent, Sun, Xin, Margaryan, Ashot, Fontsere, Claudia, Bruford, M. W., Russo, I. M., Kalthoff, D. C., Sicheritz-Pontén, Thomas, Petersen, Bent, Dalén, L., KU, thw266, Marquès-Bonet, T., Gilbert, M Thomas P & Moodley, Y., 2023, In: Molecular Biology and Evolution. 40, 9, 19 p., msad180.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      Genomic affinities of two 7,000-year-old Iberian hunter-gatherers

      Sánchez-Quinto, F., Schroeder, Hannes, Ramirez, O., Avila Arcos, M. D. C., Pybus, M., Olalde, I., Velazquez, A. M. V., Marcos, M., Encinas, J., Bertranpetit, J., Orlando, L. A. A., Gilbert, M Thomas P & Lalueza-Fox, C., 2012, In: Current Biology. 22, 16, p. 1494-1499 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      Genome sequence of Campylobacter jejuni strain 327, a strain isolated from a turkey slaughterhouse

      Takamiya, M., Özen, A. I., Rasmussen, M., Alter, T., Gilbert, M Thomas P, Ussery, D. & Knoechel, Susanne, 2011, In: Standards in Genomic Sciences. 4, 2, p. 113-122 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      Genome sequences of two stress-tolerant Campylobacter jejuni poultry strains, 305 and DFVF1099

      Takamiya, M., Özen, A. I., Rasmussen, M., Alter, T., Gilbert, M Thomas P, Ussery, D. & Knoechel, Susanne, 2011, In: Journal of Bacteriology. 193, 19, p. 5546-5547 2 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution

      Tanner, A. R., Fuchs, D., Winkelmann, I. E. H., Gilbert, M Thomas P, Pankey, M. S., Oliveira Ribeiro, Â. M., Kocot, K. M., Halanych, K. M., Oakley, T. H., Rodrigues da Fonseca, Rute Andreia, Pisani, D. & Vinther, J., 15 Mar 2017, In: Proceedings of the Royal Society B: Biological Sciences. 284, 1850, 7 p., 20162818.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      Bat biology, genomes, and the Bat1K project: to generate chromosome-level genomes for all living bat species

      Teeling, E. C., Vernes, S. C., Dávalos, L. M., Ray, D. A., Gilbert, M Thomas P & Myers, E., 2018, In: Annual Review of Animal Biosciences. 6, p. 23-46 24 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      Demographic reconstruction from ancient DNA supports rapid extinction of the great auk

      Thomas, J. E., Carvalho, G. R., Haile, J., Rawlence, N. J., Martin, M. D., Ho, S. Y. W., Sigfusson, A. P., Josefsson, V. A., Frederiksen, M., Linnebjerg, J. F., Castruita, J. A. S., Niemann, J., Sinding, M-H. S., Sandoval-Velasco, M., Soares, A. E. R., Lacy, R., Barilaro, C., Best, J., Brandis, D., Cavallo, C. & 17 others, Elorza, M., Garrett, K. L., Groot, M., Johansson, F., Lifjeld, J. T., Nilson, G., Serjeanston, D., Sweet, P., Fuller, E., Hufthammer, A. K., Meldgaard, Morten, Fjeldså, Jon, Shapiro, B., Hofreiter, M., Stewart, J. R., Gilbert, M Thomas P & Knapp, M., 2019, In: eLife. 8, 35 p., e47509.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      An ‛aukward’ tale: a genetic approach to discover the whereabouts of the last Great Auks

      Thomas, J. E., Carvalho, G. R., Haile, James Seymour, Martin, M. D., Samaniego Castruita, J. A., Niemann, Jonas, Sinding, Mikkel Holger Strander, Sandoval-Velasco, Marcela, Rawlence, N. J., Fuller, E., Fjeldså, Jon, Hofreiter, M., Stewart, J. R., Gilbert, M Thomas P & Knapp, M., 15 Jun 2017, In: Genes. 8, 6, 12 p., 164.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      Non-destructive sampling of ancient insect DNA

      Thomsen, P. F., Elias, S., Gilbert, M Thomas P, Haile, James Seymour, Munch, K., Kuzmina, S., Froese, D. G., Sher, A., Holdaway, R. N. & Willerslev, Eske, 2009, In: PLoS ONE. 4, 4, p. e5048

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      Monitoring endangered freshwater biodiversity using environmental DNA

      Thomsen, P. F., Kielgast, J., Iversen, Lars Lønsmann, Wiuf, C. H., Rasmussen, M., Gilbert, M Thomas P, Orlando, L. A. A. & Willerslev, Eske, 2012, In: Molecular Ecology. 21, 11, p. 2565-2573 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      Novel strategies to improve chicken performance and welfare by unveiling host-microbiota interactions through hologenomics

      Tous, N., Marcos, S., Goodarzi Boroojeni, F., Pérez de Rozas, A., Zentek, J., Estonba, A., Sandvang, D., Gilbert, M Thomas P, Esteve-Garcia, E., Finn, R., Alberdi, Antton & Tarradas, J., 2022, In: Frontiers in Physiology. 13, 14 p., 884925.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      Hybridization capture using short PCR products enriches small genomes by Capturing Flanking Sequences (CapFlank)

      Tsangaras, K., Wales, N., Sicheritz-Pontén, T., Rasmussen, Simon, Michaux, J., Ishida, Y., Morand, S., Kampmann, Marie-Louise, Gilbert, M Thomas P & Greenwood, A. D., 2014, In: PLoS ONE. 9, 10, 10 p., e109101.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      Genomic and proteomic evidence for Mycobacterium leprae in human medieval dental calculus from Trondheim, Norway

      Vagene, A. J., Fotaki, Anna Katerina, Denham, S. D., Orbegozo, M., Mackie, Meaghan, Olsen, Jesper Velgaard, Cappellini, Enrico, Christophersen, A. & Gilbert, M Thomas P, 2020, In: American Journal of Physical Anthropology. 171, p. 291 1 p.

      Research output: Contribution to journal › Conference abstract in journal › Research

    20. Published

      Using in silico predicted ancestral genomes to improve the efficiency of paleogenome reconstruction

      Vieira, Filipe Garrett, Castruita, J. A. S. & Gilbert, M Thomas P, 2020, In: Ecology and Evolution. 10, 23, p. 12700-12709

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      Statistical analysis of post mortem DNA damage-derived miscoding lesions in Neandertal mitochondrial DNA

      Vives, S., Gilbert, M Thomas P, Arenas, C., Gigli, E., Lao, O. & Lalueza-Fox, C., 2008, In: BMC Research Notes. 1, p. 40

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      The survival of PCR-amplifiable DNA in cow leather15

      Vuissoz, A., Worobey, M., Odegaard, N., Bunce, M., Machado, C. A., Lynnerup, Niels, Peacock, E. E. & Gilbert, M Thomas P, 2007, In: Journal of Archaeological Science. 34, 5, p. 823-829 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      Ancient DNA reveals the timing and persistence of organellar genetic bottlenecks over 3,000 years of sunflower domestication and improvement

      Wales, N., Akman, M., Watson, R. H. B., Sánchez Barreiro, F., Smith, B. D., Gremillion, K. J., Gilbert, M Thomas P & Blackman, B. K., 1 Jan 2019, In: Evolutionary Applications. 12, 1, p. 38-53

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      Optimization of DNA recovery and amplification from non-carbonized archaeobotanical remains

      Wales, N., Andersen, K., Cappellini, Enrico, Avila Arcos, M. D. C. & Gilbert, M Thomas P, 2014, In: PLOS ONE. 9, 1, 14 p., e86827.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Choosing the best plant for the job: a cost-effective assay to prescreen ancient plant remains destined for shotgun sequencing

      Wales, N., Romero-Navarro, J. A., Cappellini, Enrico & Gilbert, M Thomas P, 20 Sep 2012, In: PLoS ONE. 7, 9, 8 p., e45644.

      Research output: Contribution to journal › Journal article › Research › peer-review

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