Simon Rasmussen
Professor
Rasmussen Group
- 2014
- Published
Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil
Malaspinas, A. S., Lao, O., Schroeder, H., Rasmussen, M., Raghavan, M., Moltke, I., Campos, P., Sagredo, F. S., Rasmussen, S., Gonçalves, V. F., Albrechtsen, A., Allentoft, M. E., Johnson, P. L. F., Li, M., Reis, S., Bernardo, D. V., DeGiorgio, M., Duggan, A. T., Bastos, M., Wang, Y. & 20 others, , 2014, In: Current biology : CB. 24, 21, p. R1035-R1037 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Upper palaeolithic Siberian genome reveals dual ancestry of Native Americans
Raghavan, M., Skoglund, P., Graf, K. E., Metspalu, M., Albrechtsen, A., Moltke, I., Rasmussen, S., Stafford jr., T., Orlando, L. A. A., Metspalu, E., Karmin, M., Tambets, K., Rootsi, S., Mägi, R., Campos, P., Balanovska, E., Balanovsky, O., Khusnutdinova, E., Litvinov, S., Osipova, L. P. & 11 others, , 2014, In: Nature. 505, 7481, p. 87-91 4 p.Research output: Contribution to journal › Letter › Research › peer-review
Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products
Almeida, M., Hébert, A., Abraham, A., Rasmussen, Simon, Monnet, C., Pons, N., Delbès, C., Loux, V., Batto, J., Leonard, P., Kennedy, S., Ehrlich, S. D., Pop, M., Montel, M., Irlinger, F. & Renault, P., 13 Dec 2014, In: BMC Genomics. 15, p. 1101Research output: Contribution to journal › Journal article › Research › peer-review
- 2015
- Published
Discovery, genotyping and characterization of structural variation and novel sequence at single nucleotide resolution from de novo genome assemblies on a population scale
Danish Pan Genome Consortium, D. P. G. C., Belling, K. G. & Rasmussen, Simon, 2015, In: GigaScience. 4, 13 p., 64.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Early divergent strains of Yersinia pestis in Eurasia 5,000 years ago
Rasmussen, S., Allentoft, M. E., Nielsen, K., Orlando, L. A. A., Sikora, M., Sjögren, K-G., Pedersen, A. G., Schubert, M., Van Dam, A., Kapel, C. M. O., Nielsen, H. B., Brunak, S., Avetisyan, P., Epimakhov, A., Khalyapin, M. V., Gnuni, A., Kriiska, A., Lasak, I., Metspalu, M., Moiseyev, V. & 11 others, , 2015, In: Cell. 163, 3, p. 571-582 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic evidence for the Pleistocene and recent population history of Native Americans
Raghavan, M., Steinrücken, M., Harris, K., Schiffels, S., Rasmussen, S., DeGiorgio, M., Albrechtsen, A., Valdiosera Morales, C. E., Avila Arcos, M. D. C., Malaspinas, A. S., Eriksson, A., Moltke, I., Metspalu, M., Homburger, J. R., Wall, J., Cornejo, O. E., Moreno Mayar, J. V., Korneliussen, T. S., Pierre, T. L., Rasmussen, M. & 81 others, , 2015, In: Science (New York, N.Y.). 349, 6250, 6250.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios
Besenbacher, S., Liu, S., Gonzalez-Izarzugaza, J. M., Grove, J., Belling, K. G., Bork-Jensen, J., Huang, S., Als, T. D., Li, S., Yadav, R., Rubio García, A., Lescai, F., Demontis, D., Rao, J., Ye, W., Mailund, T., Møllegaard Friborg, R., Pedersen, C. N. S., Xu, R., Sun, J. & 27 others, , 2015, In: Nature Communications. 6, 9 p., 5969.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transcriptome profiling of brown adipose tissue during cold exposure reveals extensive regulation of glucose metabolism
Hao, Q., Yadav, R., Basse, A. L., Petersen, S., Sonne, Si Brask, Rasmussen, Simon, Zhu, Q., Lu, Z., Wang, J., Audouze, K., Gupta, R., Madsen, L., Kristiansen, Karsten & Hansen, Jacob B., 2015, In: American Journal of Physiology: Endocrinology and Metabolism. 308, 5, p. E380-E392 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance
Nordahl Petersen, T., Rasmussen, Simon, Hasman, H., Carøe, C., Bælum, J., Schultz, A. C., Bergmark, L., Svendsen, C. A., Lund, O., Sicheritz-Pontén, T. & Aarestrup, F. M., 10 Jul 2015, In: Scientific Reports. 5, p. 11444Research output: Contribution to journal › Journal article › Research › peer-review
Reads2Type: a web application for rapid microbial taxonomy identification
Saputra, D., Rasmussen, Simon, Larsen, M. V., Haddad, N., Sperotto, M. M., Aarestrup, F. M., Lund, O. & Sicheritz-Pontén, T., 25 Nov 2015, In: BMC Bioinformatics. 16, 398.Research output: Contribution to journal › Journal article › Research › peer-review
- 2016
- Published
A genomic history of aboriginal Australia
Malaspinas, A. S., Westaway, M. C., Muller, C. E., Sousa, V. C., Lao, O., Alves, I., Bergström, A., Athanasiadis, G., Cheng, J. Y., Crawford, J. E., Heupink, T. H., Macholdt, E., Peischl, S., Rasmussen, S., Schiffels, S., Subramanian, S., Wright, J. L., Albrechtsen, A., Barbieri, C., Dupanloup, I. & 55 others, , 2016, In: Nature. 538, 7624, p. 207-214 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dhurrin metabolism in the developing grain of Sorghum bicolor (L.) Moench investigated by metabolite profiling and novel clustering analyses of time-resolved transcriptomic data
Nielsen, L. J., Stuart, P., Picmanova, M., Rasmussen, Simon, Olsen, C. E., Harholt, J., Møller, Birger Lindberg & Bjarnholt, Nanna, 2016, In: BMC Genomics. 17, 24 p., 1021.Research output: Contribution to journal › Journal article › Research › peer-review
Alpha proteobacterial ancestry of the [Fe-Fe]-hydrogenases in anaerobic eukaryotes
Degli Esposti, M., Cortez, D., Lozano, L., Rasmussen, Simon, Nielsen, H. B. & Martinez Romero, E., 30 Jul 2016, In: Biology Direct. 11, p. 34Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Whole genome sequencing as a tool for phylogenetic analysis of clinical strains of Mitis group streptococci
Rasmussen, L. H., Dargis, R., Højholt, K., Christensen, J. J., Skovgaard, O., Justesen, U. S., Rosenvinge, F. S., Moser, Claus Ernst, Lukjancenko, O., Rasmussen, Simon & Nielsen, X. C., Oct 2016, In: European Journal of Clinical Microbiology & Infectious Diseases. 35, 10, p. 1615-1625Research output: Contribution to journal › Journal article › Research › peer-review
Metagenomic analysis of rapid gravity sand filter microbial communities suggests novel physiology of Nitrospira spp
Palomo, A., Jane Fowler, S., Gülay, A., Rasmussen, Simon, Sicheritz-Ponten, T. & Smets, B. F., Nov 2016, In: I S M E Journal. 10, 11, p. 2569-2581 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
- Published
Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion
Skov, L., Schierup, M. H., Danish Pan Genome Consortium, D. P. G. C., Sørensen, L. M., Petersen, Bent, Sibbesen, Jonas Andreas, Liu, S., Belling, K. G., Have, C. T., Bork-Jensen, J., Hansen, Torben, Krogh, Anders, Sørensen, Thorkild I.A., Pedersen, Oluf Borbye, Rasmussen, Simon, Kristiansen, Karsten & Brunak, Søren, 2017, In: PLOS Genetics. 13, 8, p. e1006834Research output: Contribution to journal › Journal article › Research › peer-review
Gene expression plasticity across hosts of an invasive scale insect species
Christodoulides, N., Van Dam, A. R., Peterson, D. A., Frandsen, R. J. N., Mortensen, U. H., Petersen, Bent, Rasmussen, Simon, Normark, B. B. & Hardy, N. B., 2017, In: PLoS ONE. 12, 5Research output: Contribution to journal › Journal article › Research › peer-review
Genome sequence of Talaromyces atroroseus, which produces red colorants for the food industry
Thrane, U., Rasmussen, K. B., Petersen, Bent, Rasmussen, Simon, Sicheritz-Pontén, Thomas & Mortensen, U. H., 2017, In: Genome Announcements. 5, 9, 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sequencing and de novo assembly of 150 genomes from Denmark as a population reference
Sørensen, L. M., Jensen, J. M., Petersen, B., Sibbesen, J. A., Liu, S., Villesen, P., Skov, L., Belling, K. G., Have, C. T., Izarzugaza, J. M. G., Grosjean, M., Bork-Jensen, J., Grove, J., Als, T. D., Huang, S., Chang, Y., Xu, R., Ye, W., Rao, J., Guo, X. & 39 others, , 2017, In: Nature. 548, 7665, p. 87-91 5 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Re-theorising mobility and the formation of culture and language among the Corded Ware Culture in Europe: [incl. Corrigendum]
Kristiansen, K., Allentoft, Morten Erik, Frei, K. M., Iversen, Rune, Johannsen, N. N., Kroonen, Guus, Pospieszny, L., Price, T. D., Rasmussen, Simon, Sjögren, K., Sikora, Martin & Willerslev, Eske, Apr 2017, In: Antiquity. 91, 356, p. 334-347Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Assembly and analysis of 100 full MHC haplotypes from the Danish population
Jensen, J. M., Villesen, P., Friborg, R. M., Mailund, T., Besenbacher, S., Sørensen, L. M., Petersen, B., Sibbesen, J. A., Liu, S., Skov, L., Belling, K. G., Have, C. T., Izarzugaza, J. M. G., Grosjean, M., Bork-Jensen, J., Grove, J., Als, T. D., Huang, S., Chang, Y., Xu, R. & 39 others, , Sep 2017, In: Genome Research. 27, 9, p. 1597-1607 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
In silico assessment of virulence factors in strains of streptococcus oralis and Streptococcus mitis isolated from patients with infective endocarditis
Rasmussen, L. H., Højholt, K., Dargis, R., Christensen, J. J., Skovgaard, O., Justesen, U. S., Rosenvinge, F. S., Moser, Claus Ernst, Lukjancenko, O., Rasmussen, Simon & Nielsen, X. C., 1 Sep 2017, In: Journal of Medical Microbiology. 66, p. 1316-1323 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic characterization, phylogenetic analysis, and identification of virulence factors in Aerococcus sanguinicola and Aerococcus urinae strains isolated from infection episodes
Carkaci, D., Højholt, K., Nielsen, X. C., Dargis, R., Rasmussen, Simon, Skovgaard, O., Fuursted, K., Andersen, P. S., Stegger, M. & Christensen, J. J., Nov 2017, In: Microbial Pathogenesis. 112, p. 327-340 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers
Sikora, M., Seguin-Orlando, A., Sousa, V. C., Albrechtsen, A., Korneliussen, T. S., Ko, A., Rasmussen, S., Dupanloup, I., Nigst, P. R., Bosch, M. D., Renaud, G., Allentoft, M. E., Margaryan, A., Vasilyev, S. V., Veselovskaya, E. V., Borutskaya, S. B., Deviese, T., Comeskey, D., Higham, T., Manica, A. & 7 others, , 3 Nov 2017, In: Science. 358, 6363, p. 659-662 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2018
- Published
137 ancient human genomes from across the Eurasian steppes
Damgaard, P. D. B., Marchi, N., Rasmussen, S., Peyrot, M., Renaud, G., Korneliussen, T. S., Moreno-Mayar, J. V., Pedersen, M. W., Goldberg, A., Usmanova, E., Baimukhanov, N., Loman, V., Hedeager, L., Pedersen, A. G., Nielsen, K., Afanasievl, G., Akmatov, K., Aldashev, A., Alpaslan, A., Baimbetov, G. & 55 others, , 2018, In: Nature. 557, 7705, p. 369-374 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 204201681
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Genome-scale cold stress response regulatory networks in ten Arabidopsis thaliana ecotypes
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
607
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Bifidobacterium bifidum actively changes the gene expression profile induced by Lactobacillus acidophilus in murine dendritic cells
Research output: Contribution to journal › Journal article › Research › peer-review
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433
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Discovery, genotyping and characterization of structural variation and novel sequence at single nucleotide resolution from de novo genome assemblies on a population scale
Research output: Contribution to journal › Journal article › Research › peer-review
Published