Rasmus Nielsen

Rasmus Nielsen

Professor

ORCID: 0000-0003-0513-6591

Publication year:
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  1. 2015
  2. Published

    Population genomics of bronze age Eurasia

    Allentoft, M. E., Sikora, M., Sjogren, K-G., Rasmussen, S., Rasmussen, M., Stenderup, J., Damgaard, P. D. B., Schroeder, H., Ahlstrom, T., Vinner, L., Malaspinas, A. S., Margaryan, A., Higham, T., Chivall, D., Lynnerup, N., Harvig, L. L., Baron, J., Della Casa, P., Dabrowski, P., Duffy, P. R. & 46 others, Ebel, A. V., Epimakhov, A., Frei, K., Furmanek, M., Gralak, T., Gromov, A., Gronkiewicz, S., Grupe, G., Hajdu, T., Jarysz, R., Khartanovich, V., Khokhlov, A., Kiss, V., Kolar, J., Kriiska, A., Lasak, I., Longhi, C., McGlynn, G., Merkevicius, A., Merkyte, Inga, Metspalu, M., Mkrtchyan, R., Moiseyev, V., Paja, L., Palfi, G., Pokutta, D., Pospieszny, L., Price, T. D., Saag, L., Sablin, M., Shishlina, N., Smrcka, V., Soenov, V. I., Szeverenyi, V., Toth, G., Trifanova, S. V., Varul, L., Vicze, M., Yepiskoposyan, L., Zhitenev, V., Orlando, L. A. A., Sicheritz-Ponten, T., Brunak, Søren, Nielsen, Rasmus, Kristiansen, K. & Willerslev, Eske, 2015, In: Nature Genetics. 522, 7555, p. 167-172 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    The ancestry and affiliations of Kennewick Man

    Rasmussen, M., Sikora, Martin, Albrechtsen, Anders, Korneliussen, Thorfinn Sand, Moreno Mayar, J. Víctor, Poznik, G. D., Zollikofer, C. P. E., Ponce de León, M. S., Allentoft, Morten Erik, Moltke, Ida, Jónsson, H., Valdiosera Morales, C. E., Malhi, R. S., Orlando, L. A. A., Bustamante, C. D., Stafford jr., T., Meltzer, D. J., Nielsen, Rasmus & Willerslev, Eske, 2015, In: Nature. 523, 7561, p. 455-458 4 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  4. Published

    The origin and evolution of maize in the Southwestern United States: [+ erratum]

    Rodrigues da Fonseca, Rute Andreia, Smith, B. D., Wales, N., Cappellini, Enrico, Skoglund, P., Fumagalli, M., Samaniego Castruita, J. A., Carøe, C., Avila Arcos, M. D. C., Hufnagel, D. E., Korneliussen, Thorfinn Sand, Vieira, Filipe Garrett, Jakobsson, M., Arriaza, B., Willerslev, Eske, Nielsen, Rasmus, Hufford, M. B., Albrechtsen, Anders, Ross-Ibarra, J. & Gilbert, M Thomas P, 2015, In: Nature Plants. 1, 5 p., 14003.

    Research output: Contribution to journal › Letter › Research › peer-review

  5. Published

    Uncovering the genetic history of the present-day greenlandic population

    Moltke, Ida, Fumagalli, M., Korneliussen, Thorfinn Sand, Crawford, J. E., Bjerregaard, P., Jørgensen, M. E., Grarup, Niels, Gulløv, H. C., Linneberg, Allan René, Pedersen, Oluf Borbye, Hansen, Torben, Nielsen, Rasmus & Albrechtsen, Anders, 2015, In: American Journal of Human Genetics. 96, 1, p. 54-69 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Association mapping for compound heterozygous traits using phenotypic distance and integer programming

    Gusfield, D. & Nielsen, Rasmus, 1 Jan 2015, Algorithms in Bioinformatics - 15th International Workshop, WABI 2015, Proceedings. Pop, M. & Touzet, H. (eds.). Springer Verlag, p. 136-147 12 p. A1. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 9289).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  7. A genome-wide scan for signatures of directional selection in domesticated pigs

    Moon, S., Kim, T. H., Lee, K. T., Kwak, W., Lee, T., Lee, S. W., Kim, M. J., Cho, K., Kim, N., Chung, W. H., Sung, S., Park, T., Cho, S., Groenen, M. A. M., Nielsen, Rasmus, Kim, Y. & Kim, H., 25 Feb 2015, In: BMC Genomics. 16, 1, 130.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Evidence for archaic adaptive introgression in humans

    Racimo, Fernando, Sankararaman, S., Nielsen, Rasmus & Huerta-Sánchez, E., 18 May 2015, In: Nature Reviews Genetics. 16, 6, p. 359-371 13 p.

    Research output: Contribution to journal › Review › Research › peer-review

  9. Number of genes controlling a quantitative trait in a hybrid zone of the aposematic frog ranitomeya imitator

    Vestergaard, J. S., Twomey, E., Larsen, Rasmus Stenbak, Summers, K. & Nielsen, Rasmus, 22 May 2015, In: Proceedings of the Royal Society B: Biological Sciences. 282, 1807, 20141950.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Fitting the Balding-Nichols model to forensic databases

    Rohlfs, R. V., Aguiar, V. R. C., Lohmueller, K. E., Castro, A. M., Ferreira, A. C. S., Almeida, V. C. O., Louro, I. D. & Nielsen, Rasmus, 16 Jul 2015, In: Forensic Science International: Genetics. 19, p. 86-91 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Introduction: Genomics and philosophy of race

    Winther, Rasmus, Millstein, R. L. & Nielsen, Rasmus, 1 Aug 2015, In: Studies in History and Philosophy of Science Part C :Studies in History and Philosophy of Biological and Biomedical Sciences. 52, p. 1-4 4 p.

    Research output: Contribution to journal › Editorial › Research › peer-review

  12. The mind, the lab, and the field: Three kinds of populations in scientific practice

    Winther, Rasmus, Giordano, R., Edge, M. D. & Nielsen, Rasmus, 1 Aug 2015, In: Studies in History and Philosophy of Science Part C :Studies in History and Philosophy of Biological and Biomedical Sciences. 52, p. 12-21 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Reticulate speciation and barriers to introgression in the anopheles gambiae species complex

    Crawford, J. E., Riehle, M. M., Guelbeogo, W. M., Gneme, A., Sagnon, N., Vernick, K. D., Nielsen, Rasmus & Lazzaro, B. P., 1 Nov 2015, In: Genome Biology and Evolution. 7, 11, p. 3116-3131 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. 2016
  15. Published

    A genomic history of aboriginal Australia

    Malaspinas, A. S., Westaway, M. C., Muller, C. E., Sousa, V. C., Lao, O., Alves, I., Bergström, A., Athanasiadis, G., Cheng, J. Y., Crawford, J. E., Heupink, T. H., Macholdt, E., Peischl, S., Rasmussen, S., Schiffels, S., Subramanian, S., Wright, J. L., Albrechtsen, A., Barbieri, C., Dupanloup, I. & 55 others, Eriksson, A., Margaryan, Ashot, Moltke, Ida, Pugach, I., Korneliussen, Thorfinn Sand, Levkivskyi, I. P., Moreno Mayar, J. Víctor, Ni, S., Racimo, F., Sikora, Martin, Xue, Y., Aghakhanian, F. A., Brucato, N., Brunak, Søren, Campos, P., Clark, W., Ellingvåg, S., Fourmile, G., Gerbault, P., Injie, D., Koki, G., Leavesley, M., Logan, B., Lynch, A., Matisoo-Smith, E. A., McAllister, P. J., Mentzer, A. J., Metspalu, M., Migliano, A. B., Murgha, L., Phipps, M. E., Pomat, W., Reynolds, D., Ricaut, F., Siba, P., Thomas, M. G., Wales, T., Wall, C. M., Oppenheimer, S. J., Tyler-Smith, C., Durbin, R., Dortch, J., Manica, A., Schierup, M. H., Foley, R. A., Lahr, M. M., Bowern, C., Wall, J. D., Mailund, T., Stoneking, M., Nielsen, Rasmus, Sandhu, M. S., Excoffier, L., Lambert, D. M. & Willerslev, Eske, 2016, In: Nature. 538, 7624, p. 207-214 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Detecting recent selective sweeps while controlling for mutation rate and background selection

    Huber, C. D., DeGiorgio, M., Hellmann, I. & Nielsen, Rasmus, 2016, In: Molecular Ecology. 25, 1, p. 142-156 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Estimating IBD tracts from low coverage NGS data

    Vieira, Filipe Garrett, Albrechtsen, Anders & Nielsen, Rasmus, 2016, In: Bioinformatics. 32, 14, p. 2096-2102 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Evolution of GOUNDRY, a cryptic subgroup of Anopheles gambiae s.l., and its impact on susceptibility to Plasmodium infection

    Crawford, J. E., Riehle, M. M., Markianos, K., Bischoff, E., Guelbeogo, W. M., Gneme, A., Sagnon, N., Vernick, K. D., Nielsen, Rasmus & Lazzaro, B. P., 2016, In: Molecular Ecology. 25, 7, p. 1494-1510 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Fumio Tajima and the origin of modern population genetics

    Nielsen, Rasmus, 2016, In: Genetics. 204, 2, p. 389-390 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Postglacial viability and colonization in North America’s ice-free corridor

    Pedersen, Mikkel Winther, Ruter, Anthony Henry, Schweger, C., Friebe, H., Staff, R. A., Kjeldsen, Kristian Kjellerup, Zepeda Mendoza, M. L., Beaudoin, A. B., Zutter, C., Larsen, Nicolaj Krog, Potter, B. A., Nielsen, Rasmus, Rainville, R. A., Orlando, L. A. A., Meltzer, D. J., Kjær, Kurt H. & Willerslev, Eske, 2016, In: Nature. 537, 7618, p. 45–49 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. REPdenovo: Inferring De Novo repeat motifs from short sequence reads

    Chu, C., Nielsen, Rasmus & Wu, Y., 2016, In: PLoS ONE. 11, 3, 17 p., e0150719.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    The genetic cost of Neanderthal introgression

    Harris, K. & Nielsen, Rasmus, Jun 2016, In: Genetics (Online). 203, 2, p. 881-891 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    The power of inbreeding: NGS-based GWAS of rice reveals convergent evolution during rice domestication

    Wang, H., Xu, X., Vieira, Filipe Garrett, Xiao, Y., Li, Z., Wang, J., Nielsen, Rasmus & Chu, C., 6 Jul 2016, In: Molecular Plant. 9, 7, p. 975-985 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Genomic analyses inform on migration events during the peopling of Eurasia

    Pagani, L., Lawson, D. J., Jagoda, E., Moerseburg, A., Eriksson, A., Mitt, M., Clemente, F., Hudjashov, G., DeGiorgio, M., Saag, L., Wall, J. D., Cardona, A., Maegi, R., Sayres, M. A. W., Kaewert, S., Inchley, C., Scheib, C. L., Jaerve, M., Karmin, M., Jacobs, G. S. & 78 others, Antao, T., Iliescu, F. M., Kushniarevich, A., Ayub, Q., Tyler-Smith, C., Xue, Y., Yunusbayev, B., Tambets, K., Mallick, C. B., Saag, L., Pocheshkhova, E., Andriadze, G., Muller, C. E., Westaway, M. C., Lambert, D. M., Zoraqi, G., Turdikulova, S., Dalimova, D., Sabitov, Z., Sultana, G. N. N., Lachance, J., Tishkoff, S., Momynaliev, K., Isakova, J., Damba, L. D., Gubina, M., Nymadawa, P., Evseeva, I., Atramentova, L., Utevska, O., Ricaut, F., Brucato, N., Sudoyo, H., Letellier, T., Cox, M. P., Barashkov, N. A., Škaro, V., Mulahasanovic, L., Primorac, D., Sahakyan, H., Mormina, M., Eichstaedt, C. A., Lichman, D. V., Abdullah, S., Chaubey, G., Wee, J. T. S., Mihailov, E., Karunas, A., Litvinov, S., Khusainova, R., Ekomasova, N., Akhmetova, V., Khidiyatova, I., Marjanovi, D., Yepiskoposyan, L., Behar, D. M., Balanovska, E., Metspalu, A., Derenko, M., Malyarchuk, B., Voevoda, M., Fedorova, S. A., Osipova, L. P., Mirazon, M., Gerbault, P., Leavesley, M., Migliano, A. B., Petraglia, M., Balanovsky, O., Khusnutdinova, E. K., Metspalu, E., Thomas, M. G., Manica, A., Nielsen, Rasmus, Villems, R., Willerslev, Eske, Kivisild, T. & Metspalu, M., 13 Oct 2016, In: Nature. 538, 7624, p. 238-242 5 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  25. 2017
  26. Published

    Archaic adaptive introgression in TBX15/WARS2

    Racimo, Fernando, Gokhman, D., Fumagalli, M., Ko, A., Hansen, Torben, Moltke, Ida, Albrechtsen, Anders, Carmel, L., Huerta-Sánchez, E. & Nielsen, Rasmus, 2017, In: Molecular Biology and Evolution. 34, 3, p. 509-524 16 p., msw283.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Genome-wide signatures of complex introgression and adaptive evolution in the big cats

    Figueiró, H. V., Li, G., Trindade, F. J., Assis, J., Pais, F., Fernandes, G., Santos, S. H. D., Hughes, G. M., Komissarov, A., Antunes, A., Trinca, C. S., Rodrigues, M. R., Linderoth, T., Bi, K., Silveira, L., Azevedo, F. C. C., Kantek, D., Ramalho, E., Brassaloti, R. A., Villela, P. M. S. & 13 others, Nunes, A. L. V., Teixeira, R. H. F., Morato, R. G., Loska, D., Saragüeta, P., Gabaldón, T., Teeling, E. C., O'Brien, S. J., Nielsen, Rasmus, Coutinho, L. L., Oliveira, G., Murphy, W. J. & Eizirik, E., 1 Jan 2017, In: Science Advances. 3, 7, 13 p., e1700299.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    A hidden Markov model approach for simultaneously estimating local ancestry and admixture time using next generation sequence data in samples of arbitrary ploidy

    Corbett-Detig, R. & Nielsen, Rasmus, 3 Jan 2017, In: PLoS Genetics. 13, 1, 40 p., e1006529.

    Research output: Contribution to journal › Journal article › Research › peer-review

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