Rasmus Nielsen

Rasmus Nielsen

Professor

ORCID: 0000-0003-0513-6591

Publication year:
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  1. 2019

  2. Passage Adaptation Correlates With the Reduced Efficacy of the Influenza Vaccine

    Chen, H., Alvarez, J. J. S., Ng, S. H., Nielsen, Rasmus & Zhai, W., 2019, In: Clinical Infectious Diseases. 69, 7, p. 1198-1204 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Natural selection on the Arabidopsis thaliana genome in present and future climates

    Exposito-Alonso, M., Burbano, H. A., Bossdorf, O., Nielsen, R., Weigel, D., Exposito-Alonso, M., Gomez Rodriguez, R., Barragan, C., Capovilla, G., Chae, E., Devos, J., Dogan, E. S., Friedemann, C., Gross, C., Lang, P., Lundberg, D., Middendorf, V., Kageyama, J., Karasov, T., Kersten, S. & 23 others, Petersen, S., Rabbani, L., Regalado, J., Reinelt, L., Rowan, B., Seymour, D. K., Symeonidi, E., Schwab, R., Diep Thi Ngoc Tran, Venkataramani, K., Van de Weyer, A., Vasseur, F., Wang, G., Wedegartner, R., Weiss, F., Wu, R., Xi, W., Zaidem, M., Zhu, W., Garcia-Arenal, F., Burbano, H. A., Bossdorf, O. & Weigel, D., 2019, In: Nature. 573, 7772, p. 126-129

    Research output: Contribution to journal › Letter › Research › peer-review

  4. Published

    Genetic rescue and the maintenance of native ancestry

    Harris, K., Zhang, Y. & Nielsen, Rasmus, Feb 2019, In: Conservation Genetics. 20, 1, p. 59-64

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Joint Estimation of Pedigrees and Effective Population Size Using Markov Chain Monte Carlo

    Ko, A. & Nielsen, Rasmus, 2019, In: Genetics. 212, 3, p. 855-868

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Human Disease Variation in the Light of Population Genomics

    Prohaska, Ana, Racimo, Fernando, Schork, A. J., Sikora, Martin, Stern, A. J., Ilardo, M., Allentoft, Morten Erik, Folkersen, L., Buil, A., Moreno Mayar, J. Víctor, Korneliussen, Thorfinn Sand, Geschwind, D., Ingason, A., Werge, Thomas, Nielsen, Rasmus & Willerslev, Eske, 2019, In: Cell. 177, 1, p. 115-131 17 p.

    Research output: Contribution to journal › Review › Research › peer-review

  7. Published

    Emergence and Spread of Basal Lineages of Yersinia pestis during the Neolithic Decline

    Rascovan, N., Sjogren, K., Kristiansen, K., Nielsen, Rasmus, Willerslev, Eske, Desnues, C. & Rasmussen, Simon, 2019, In: Cell. 176, 1-2, p. 295-305.e10

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    The population history of northeastern Siberia since the Pleistocene

    Sikora, M., Pitulko, V. V., Sousa, V. C., Allentoft, M. E., Vinner, L., Rasmussen, S., Margaryan, A., Damgaard, P. D. B., de la Fuente Castro, C., Renaud, G., Yang, M. A., Fu, Q., Dupanloup, I., Giampoudakis, K., Nogues, D. B., Rahbek, C., Kroonen, G., Peyrot, M., McColl, H., Vasilyev, S. V. & 27 others, Veselovskaya, E., Gerasimova, M., Pavlova, E. Y., Chasnyk, V. G., Nikolskiy, P. A., Gromov, A. V., Khartanovich, V. I., Moiseyev, V., Grebenyuk, P. S., Fedorchenko, A. Y., Lebedintsev, A. I., Slobodin, S. B., Malyarchuk, B. A., Martiniano, R., Meldgaard, Morten, Arppe, L., Palo, J. U., Sundell, T., Mannermaa, K., Putkonen, M., Alexandersen, V., Primeau, C., Baimukhanov, N., Malhi, R. S., Sjögren, K. G., Nielsen, Rasmus & Willerslev, Eske, 2019, In: Nature. 570, p. 182–188

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. An approximate full-likelihood method for inferring selection and allele frequency trajectories from DNA sequence data

    Stern, A. J., Wilton, P. R. & Nielsen, Rasmus, 2019, In: PLOS Genetics. 15, 9, 32 p., e1008384.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    CCR5-Delta 32 is deleterious in the homozygous state in humans

    Wei, X. & Nielsen, Rasmus, Jun 2019, In: Nature Medicine. 25, 6, p. 909-910

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Bottleneck and selection in the germline and maternal age influence transmission of mitochondrial DNA in human pedigrees

    Zaidi, A. A., Wilton, P. R., Su, M. S., Paul, I. M., Arbeithuber, B., Anthony, K., Nekrutenko, A., Nielsen, Rasmus & Makova, K. D., 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 50, p. 25172-25178 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. 2018

  13. The Genetic Basis of Adaptation following Plastic Changes in Coloration in a Novel Environment

    Corl, A., Bi, K., Luke, C., Challa, A. S., Stern, A. J., Sinervo, B. & Nielsen, Rasmus, 2018, In: Current Biology. 28, 18, p. 2970-2977, e1-e7

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    137 ancient human genomes from across the Eurasian steppes

    Damgaard, P. D. B., Marchi, N., Rasmussen, S., Peyrot, M., Renaud, G., Korneliussen, T. S., Moreno-Mayar, J. V., Pedersen, M. W., Goldberg, A., Usmanova, E., Baimukhanov, N., Loman, V., Hedeager, L., Pedersen, A. G., Nielsen, K., Afanasievl, G., Akmatov, K., Aldashev, A., Alpaslan, A., Baimbetov, G. & 55 others, Bazaliiskii, V. I., Beisenov, A., Boldbaatar, B., Boldgiv, B., Dorzhu, C., Ellingvag, S., Erdenebaatar, D., Dajani, R., Dmitriev, E., Evdokimov, V., Frei, K. M., Gromov, A., Goryachev, A., Hakonarson, H., Hegay, T., Khachatryan, Z., Khaskhanov, R., Kitov', E., Kolbina, A., Kubatbek, T., Kukushkin, A., Kukushkin, I., Lau, N., Margaryan, Ashot, Merkyte, Inga, Mertz, I. V., Mertz, V. K., Mijiddorj, E., Moiyesev, V., Mukhtarova, G., Nurmukhanbetov, B., Orozbekova, Z., Panyushkina, I., Pieta, K., Smrčka, V., Shevnina, I., Logvin, A., Sjögren, K., Štolcová, T., Tashbaeva, K., Tkachev, A., Tulegenov, T., Voyakin, D., Yepiskoposyan, L., Undrakhbold, S., Varfolomeev, V., Weber, A., Kradin, N., Allentoft, Morten Erik, Orlando, L. A. A., Nielsen, Rasmus, Sikora, Martin, Heyer, E., Kristiansen, K. & Willerslev, Eske, 2018, In: Nature. 557, 7705, p. 369-374 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Human adaptation to extreme environmental conditions

    Ilardo, M. & Nielsen, Rasmus, 1 Dec 2018, In: Current Opinion in Genetics and Development. 53, p. 77-82 6 p.

    Research output: Contribution to journal › Review › Research › peer-review

  16. Published

    Physiological and Genetic Adaptations to Diving in Sea Nomads

    Ilardo, M. A., Moltke, Ida, Korneliussen, Thorfinn Sand, Cheng, J., Stern, A. J., Racimo, Fernando, Damgaard, P. D. B., Sikora, Martin, Seguin-Orlando, A., Rasmussen, Simon, van den Munckhof, I. C. L., ter Horst, R., Joosten, L. A. B., Netea, M. G., Salingkat, S., Nielsen, Rasmus & Willerslev, Eske, 2018, In: Cell. 173, 3, p. 569-580 12 p., e15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Genomic Analyses from Non-invasive Prenatal Testing Reveal Genetic Associations, Patterns of Viral Infections, and Chinese Population History

    Liu, S., Huang, S., Chen, F., Zhao, L., Yuan, Y., Francis, S. S., Fang, L., Li, Z., Lin, L., Liu, R., Zhang, Y., Xu, H., Li, S., Zhou, Y., Davies, R. W., Liu, Q., Walters, R. G., Lin, K., Ju, J., Komeliussen, T. & 18 others, Yang, M. A., Fu, Q., Wang, J., Zhou, L., Krogh, Anders, Zhang, H., Wang, W., Chen, Z., Cai, Z., Yin, Y., Yang, H., Mao, M., Shendure, J., Wang, J., Albrechtsen, Anders, Jin, X., Nielsen, Rasmus & Xu, X., 2018, In: Cell. 175, 2, p. 347-359, e1-e7

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Estimating the timing of multiple admixture pulses during local ancestry inference

    Medina, P., Thornlow, B., Nielsen, Rasmus & Corbett-Detig, R., 2018, In: Genetics. 210, 3, p. 1089-1107 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans

    Moreno Mayar, J. Víctor, Potter, B. A., Vinner, Lasse, Steinrucken, M., Rasmussen, Simon, Terhorst, J., Kamm, J. A., Albrechtsen, Anders, Malaspinas, A., Sikora, Martin, Reuther, J. D., Irish, J. D., Malhi, R. S., Orlando, L. A. A., Song, Y. S., Nielsen, Rasmus, Meltzer, D. J. & Willerslev, Eske, 2018, In: Nature Genetics. 553, 7687, p. 203-207 5 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  20. Published

    Early human dispersals within the Americas

    Moreno-Mayar, J. V., Vinner, L., de Barros Damgaard, P., de la Fuente, C., Allentoft, M. E., Vimala, T., Racimo, F., Rasmussen, S., Margaryan, A., Iraeta Orbegozo, M., Mylopotamitaki, D., Alexandersen, V., Primeau, C., Gregersen, K., Hansen, K. L., Lynnerup, N., Kjær, K., Schroeder, H., Malaspinas, A. S., Sikora, M. & 2 others, Nielsen, Rasmus & Willerslev, Eske, 7 Dec 2018, In: Science (New York, N.Y.). 362, 6419, p. 1, 1-11 12 p., eaav2621.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    On the number of siblings and p-th cousins in a large population sample

    Shchur, V. & Nielsen, Rasmus, 1 Nov 2018, In: Journal of Mathematical Biology. 77, 5, p. 1279-1298

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. A population phylogenetic view of mitochondrial heteroplasmy

    Wilton, P. R., Zaidi, A., Makova, K. & Nielsen, Rasmus, 2018, In: Genetics. 208, 3, p. 1261-1274 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Pervasive introgression facilitated domestication and adaptation in the Bos species complex

    Wu, D., Ding, X. D., Wang, S., Wójcik, J. M., Zhang, Y., Tokarska, M., Li, Y., Wang, M. S., Faruque, O., Nielsen, Rasmus, Zhang, Q. & Zhang, Y., 2018, In: Nature Ecology and Evolution. 2, 7, p. 1139-1145 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Molecular footprints of aquatic adaptation including bone mass changes in cetaceans

    Zhou, X., Sun, D., Guang, X., Ma, S., Fang, X., Mariotti, M., Nielsen, Rasmus, Gladyshev, V. N. & Yang, G., 2018, In: Genome Biology and Evolution. 10, 3, p. 967-975 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Population genomics of finless porpoises reveal an incipient cetacean species adapted to freshwater

    Zhou, X., Guang, X., Sun, D., Xu, S., Li, M., Seim, I., Jie, W., Yang, L., Zhu, Q., Xu, J., Gao, Q., Kaya, A., Dou, Q., Chen, B., Ren, W., Li, S., Zhou, K., Gladyshev, V. N., Nielsen, R., Fang, X. & 1 others, Yang, G., 2018, In: Nature Communications. 9, 8 p., 1276.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. 2017
  27. Published

    Selection in Europeans on fatty acid desaturases associated with dietary changes

    Buckley, M. T., Racimo, Fernando, Allentoft, Morten Erik, Jensen, M. K., Jonsson, Anna Elisabet, Huang, H., Hormozdiari, F., Sikora, Martin, Marnetto, D., Eskin, E., Jørgensen, M. E., Grarup, Niels, Pedersen, Oluf Borbye, Hansen, Torben, Kraft, P., Willerslev, Eske & Nielsen, Rasmus, Jun 2017, In: Molecular Biology and Evolution. 34, 6, p. 1307-1318 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Fast admixture analysis and population tree estimation for SNP and NGS data

    Cheng, J. Y., Mailund, T. & Nielsen, Rasmus, 15 Jul 2017, In: Bioinformatics. 33, 14, p. 2148-2155 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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