Tom Gilbert

Tom Gilbert

Professor

Member of:


    1. Published

      Relative performance of two DNA extraction and library preparation methods on archaeological human teeth samples

      Sandoval-Velasco, Marcela, Lundstrom, I. K. C., Wales, N., Ávila-Arcos, M. C., Schroeder, Hannes & Gilbert, M Thomas P, 2017, In: Science and Technology of Archaeological Research. 3, 1, p. 80-88 9 p.

      Research output: Contribution to journalJournal articleResearchpeer-review

    2. Published

      Hi-C chromosome conformation capture sequencing of avian genomes using the BGISEQ-500 platform

      Sandoval-Velasco, Marcela, Rodríguez, Juan Antonio, Estrada, C. P., Zhang, G., Aiden, E. L., Marti-Renom, M. A., Gilbert, M Thomas P & Smith, O., 2020, In: GigaScience. 9, 8, 7 p., giaa087.

      Research output: Contribution to journalJournal articleResearchpeer-review

    3. Published

      Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes

      Sanchez Barreiro, F., Vieira, Filipe Garrett, Martin, M. D., Haile, James Seymour, Gilbert, M Thomas P & Wales, N., 2017, In: Molecular Ecology Resources. 17, 2, p. 209-220 12 p.

      Research output: Contribution to journalJournal articleResearchpeer-review

    4. Published

      Tracking down human contamination in ancient human teeth.

      Sampietro, M. L., Gilbert, M Thomas P, Lao, O., Caramelli, D., Lari, M., Bertranpetit, J. & Lalueza-Fox, C., 2006, In: Molecular Biology and Evolution. 23, 9, p. 1801-7 6 p.

      Research output: Contribution to journalJournal articleResearchpeer-review

    5. Published

      Odintifier - A computational method for identifying insertions of organellar origin from modern and ancient high-throughput sequencing data based on haplotype phasing

      Samaniego Castruita, J. A., Zepeda Mendoza, M. L., Barnett, R., Wales, N. & Gilbert, M Thomas P, 2015, In: BMC Bioinformatics. 16, 13 p., 232.

      Research output: Contribution to journalJournal articleResearchpeer-review

    6. Published

      mtDNA analysis of human remains from an early Danish Christian cemetery

      Rudbeck, L., Gilbert, M Thomas P, Willerslev, Eske, Hansen, Anders Johannes, Lynnerup, Niels, Christensen, T. & Dissing, J., 2005, In: American Journal of Physical Anthropology. 128, 2, p. 424-9 6 p.

      Research output: Contribution to journalJournal articleResearchpeer-review

    7. Published

      The microbiome of New World vultures

      Roggenbuck, M., Schnell, I. B., Blom, N., Bælum, J., Bertelsen, M. F., Sicheritz-Pontén, T., Sørensen, Søren Johannes, Gilbert, M Thomas P, Graves, G. R. & Hansen, L. H., 2014, In: Nature Communications. 5, 7 p., 5498.

      Research output: Contribution to journalJournal articleResearchpeer-review

    8. Published

      The genetic history of Scandinavia from the Roman Iron Age to the present

      Rodríguez-Varela, R., Moore, K. H. S., Ebenesersdóttir, S. S., Kilinc, G. M., Kjellström, A., Papmehl-Dufay, L., Alfsdotter, C., Berglund, B., Alrawi, L., Kashuba, N., Sobrado, V., Lagerholm, V. K., Gilbert, E., Cavalleri, G. L., Hovig, E., Kockum, I., Olsson, T., Alfredsson, L., Hansen, T. F., Werge, T. & 24 others, Munters, A. R., Bernhardsson, C., Skar, B., Christophersen, A., Turner-Walker, G., Gopalakrishnan, Shyam, Daskalaki, E., Omrak, A., Pérez-Ramallo, P., Skoglund, P., Girdland-Flink, L., Gunnarsson, F., Hedenstierna-Jonson, C., Gilbert, M Thomas P, Lidén, K., Jakobsson, M., Einarsson, L., Victor, H., Krzewińska, M., Zachrisson, T., Storå, J., Stefánsson, K., Helgason, A. & Götherström, A., 2023, In: Cell. 186, 1, p. 32-46.e19

      Research output: Contribution to journalJournal articleResearchpeer-review

    9. Published

      The origin and evolution of maize in the Southwestern United States: [+ erratum]

      Rodrigues da Fonseca, Rute Andreia, Smith, B. D., Wales, N., Cappellini, Enrico, Skoglund, P., Fumagalli, M., Samaniego Castruita, J. A., Carøe, C., Avila Arcos, M. D. C., Hufnagel, D. E., Korneliussen, Thorfinn Sand, Vieira, Filipe Garrett, Jakobsson, M., Arriaza, B., Willerslev, Eske, Nielsen, Rasmus, Hufford, M. B., Albrechtsen, Anders, Ross-Ibarra, J. & Gilbert, M Thomas P, 2015, In: Nature Plants. 1, 5 p., 14003.

      Research output: Contribution to journalLetterResearchpeer-review

    10. Published

      Sequences of microvariant/“off-ladder” STR alleles

      Rockenbauer, Eszter, Holgersson, M., Fordyce, S. L., Avila Arcos, M. D. C., Børsting, Claus, Hansen, Anders Johannes, Frank-Hansen, R., Willerslev, Eske, Gilbert, M Thomas P & Morling, Niels, 2011, In: Forensic Science International: Genetics Supplement Series. 3, 1, p. e204-e205 2 p.

      Research output: Contribution to journalConference articleResearchpeer-review

    11. Published

      The potential and pitfalls of de-extinction

      Richmond, D. J., Sinding, Mikkel Holger Strander & Gilbert, M Thomas P, Oct 2016, In: Zoologica Scripta. 45, S1, p. 22-36 15 p.

      Research output: Contribution to journalReviewResearchpeer-review

    12. Published

      A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants

      Rice, E. S., Alberdi, A., Alfieri, J., Athrey, G., Balacco, J. R., Bardou, P., Blackmon, H., Charles, M., Cheng, H. H., Fedrigo, O., Fiddaman, S. R., Formenti, G., Frantz, L. A. F., Gilbert, M. T. P., Hearn, C. J., Jarvis, E. D., Klopp, C., Marcos, S., Mason, A. S., Velez-Irizarry, D. & 2 others, Xu, L. & Warren, W. C., 2023, In: BMC Biology. 21, 17 p., 267.

      Research output: Contribution to journalJournal articleResearchpeer-review

    13. Published

      31º South: The physiology of adaptation to arid conditions in a passerine bird

      Ribeiro, Â. M., Puetz, Lara Christine, Pattinson, N. B., Dalén, L., Deng, Y., KU, thw266, Rodrigues da Fonseca, Rute Andreia, Smit, B. & Gilbert, M Thomas P, 2019, In: Molecular Ecology. 28, 16, p. 3709-3721 13 p.

      Research output: Contribution to journalJournal articleResearchpeer-review

    14. Published

      A refined model of the genomic basis for phenotypic variation in vertebrate hemostasis

      Ribeiro, Â. M., Zepeda Mendoza, M. L., Bertelsen, Mads Frost, Kristensen, Annemarie T., Jarvis, E. D., Gilbert, M Thomas P & Rodrigues da Fonseca, Rute Andreia, 2015, In: B M C Evolutionary Biology. 15, 8 p., 124.

      Research output: Contribution to journalJournal articleResearchpeer-review

    15. Published

      31° South: Dietary niche of an arid‐zone endemic passerine

      Ribeiro, Â. M., Smit, B. & Gilbert, M Thomas P, 2019, In: Environmental Engineering. 1, 2, p. 109-118

      Research output: Contribution to journalJournal articleResearchpeer-review

    16. Published

      Towards complete and error-free genome assemblies of all vertebrate species

      Rhie, A., McCarthy, S. A., Fedrigo, O., Damas, J., Formenti, G., Koren, S., Uliano-Silva, M., Chow, W., Fungtammasan, A., Kim, J., Lee, C., Ko, B. J., Chaisson, M., Gedman, G. L., Cantin, L. J., Thibaud-Nissen, F., Haggerty, L., Bista, I., Smith, M., Haase, B. & 107 others, Mountcastle, J., Winkler, S., Paez, S., Howard, J., Vernes, S. C., Lama, T. M., Grutzner, F., Warren, W. C., Balakrishnan, C. N., Burt, D., George, J. M., Biegler, M. T., Iorns, D., Digby, A., Eason, D., Robertson, B., Edwards, T., Wilkinson, M., Turner, G., Meyer, A., Kautt, A. F., Franchini, P., Detrich, H. W., Svardal, H., Wagner, M., Naylor, G. J. P., Pippel, M., Malinsky, M., Mooney, M., Simbirsky, M., Hannigan, B. T., Pesout, T., Houck, M., Misuraca, A., Kingan, S. B., Hall, R., Kronenberg, Z., Sović, I., Dunn, C., Ning, Z., Hastie, A., Lee, J., Selvaraj, S., Green, R. E., Putnam, N. H., Gut, I., Ghurye, J., Garrison, E., Sims, Y., Collins, J., Pelan, S., Torrance, J., Tracey, A., Wood, J., Dagnew, R. E., Guan, D., London, S. E., Clayton, D. F., Mello, C. V., Friedrich, S. R., Lovell, P. V., Osipova, E., Al-Ajli, F. O., Secomandi, S., Kim, H., Theofanopoulou, C., Hiller, M., Zhou, Y., Harris, R. S., Makova, K. D., Medvedev, P., Hoffman, J., Masterson, P., Clark, K., Martin, F., Howe, K., Flicek, P., Walenz, B. P., Kwak, W., Clawson, H., Diekhans, M., Nassar, L., Paten, B., Kraus, R. H. S., Crawford, A. J., Gilbert, M Thomas P, KU, thw266, Venkatesh, B., Murphy, R. W., Koepfli, K., Shapiro, B., Johnson, W. E., Di Palma, F., Marques-Bonet, T., Teeling, E. C., Warnow, T., Graves, J. M., Ryder, O. A., Haussler, D., O’Brien, S. J., Korlach, J., Lewin, H. A., Howe, K., Myers, E. W., Durbin, R., Phillippy, A. M. & Jarvis, E. D., 2021, In: Nature. 592, 7856, p. 737-746 10 p.

      Research output: Contribution to journalJournal articleResearchpeer-review

    17. Published

      MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements

      Rey de la Iglesia, Alba, Gopalakrishan, S., Carøe, C., Alquezar-Planas, D. E., Nielsen, A. A., Röder, T., Pedersen, Lene Bruhn, Næsborg-Nielsen, C., Sinding, Mikkel Holger Strander, Rath, Martin Fredensborg, Li, Z., Petersen, Bent, Gilbert, M Thomas P, Bunce, M., Mourier, T. & Hansen, Anders Johannes, 2019, In: Molecular Ecology Resources. 19, 2, p. 512-525 14 p.

      Research output: Contribution to journalJournal articleResearchpeer-review

    18. Published

      High-throughput sequencing offers insight into mechanisms of resource partitioning in cryptic bat species

      Razgour, O., Clare, E. L., Zeale, M. R. K., Hanmer, J., Schnell, I. B., Rasmussen, M., Gilbert, M Thomas P & Jones, G., 2011, In: Ecology and Evolution. 1, 4, p. 556-570 15 p.

      Research output: Contribution to journalJournal articleResearchpeer-review

    19. Published

      Response to Comment by Goldberg et al. on "DNA from Pre-Clovis Human Coprolites in Oregon, North America"

      Rasmussen, M., Cummings, L., Gilbert, M Thomas P, Bryant, V., Smith, C., Jenkins, D. & Willerslev, Eske, 2009, In: Science. 325, p. 148 1 p.

      Research output: Contribution to journalComment/debateResearch

    20. Published

      Ancient human genome sequence of an extinct Palaeo-Eskimo

      Rasmussen, M., Li, Y., Lindgreen, S., Pedersen, J. S., Albrechtsen, A., Moltke, I., Metspalu, M., Metspalu, E., Kivisild, T., Gupta, R., Bertalan, M., Nielsen, K., Gilbert, T., Wang, Y., Raghavan, M., Campos, P., Kamp, H. L. M., Wilson, A. S., Gledhill, A., Tridico, S. & 32 others, Bunce, M., Lorenzen, Eline, Binladen, J. K. M. A., Guo, X., Zhao, J., Zhang, X., Zhang, H., Li, Z., Chen, M., Orlando, L. A. A., Kristiansen, Karsten, Bak, M., Tommerup, Niels, Bendixen, C., Pierre, T. L., Grønnow, B., Meldgaard, Morten, Andreasen, C., Fedorova, S. A., Osipova, L. P., Higham, T. F. G., Ramsey, C. B., Hansen, Thomas van Overeem, Nielsen, Finn Cilius, Crawford, M. H., Brunak, Søren, Sicheritz-Pontén, T., Villems, R., Nielsen, Rasmus, Krogh, Anders, Wang, J. & Willerslev, Eske, 11 Feb 2010, In: Nature. 463, 7282, p. 757-762 6 p.

      Research output: Contribution to journalJournal articleResearchpeer-review

    21. Published

      An Aboriginal Australian genome reveals separate human dispersals into Asia

      Rasmussen, M., Guo, X., Wang, Y., Lohmueller, K. E., Rasmussen, S., Albrechtsen, A., Skotte, L., Lindgreen, S., Metspalu, M., Jombart, T., Kivisild, T., Zhai, W., Eriksson, A., Manica, A., Orlando, L., De La Vega, F. M., Tridico, S., Metspalu, E., Nielsen, K., Avila Arcos, M. D. C. & 38 others, Moreno Mayar, J. Víctor, Muller, C., Dortch, J., Gilbert, M Thomas P, Lund, O., Wesolowska, A., Karmin, M., Weinert, L. A., Wang, B., Li, J., Tai, S., Xiao, F., Hanihara, T., van Driem, G., Jha, A. R., Ricaut, F., de Knijff, P., Migliano, A. B., Gallego Romero, I., Kristiansen, Karsten, Lambert, D. M., Brunak, Søren, Forster, P., Brinkmann, B., Nehlich, O., Bunce, M., Richards, M., Gupta, R., Bustamante, C. D., Krogh, Anders, Foley, R. A., Lahr, M. M., Balloux, F., Sicheritz-Pontén, T., Villems, R., Nielsen, Rasmus, Wang, J. & Willerslev, Eske, 2011, In: Science. 334, 6052, p. 94-98 5 p.

      Research output: Contribution to journalJournal articleResearchpeer-review

    22. Published

      Response to Comment by Goldberg et al. on "DNA from Pre-Clovis Human Coprolites in Oregon, North America"

      Rasmussen, M., Cummings, L. S., Gilbert, M Thomas P, Bryant, V., Smith, C., Jenkins, D. L., Willerslev, Eske & Rasmussen, M., 1 Jul 2009, In: Science. 325, 5937, p. 148-148 1 p.

      Research output: Contribution to journalJournal articleResearchpeer-review

    23. Published

      Assessing the genetic composition of cotton-top tamarins (Saguinus oedipus) before sweeping anthropogenic impact

      Rasmussen, Linett, Fontsere, Claudia, Soto-Calderón, I. D., Guillen, R., Savage, A., Hansen, Anders Johannes, Hvilsom, C. & Gilbert, M Thomas P, 2023, In: Molecular Ecology. 32, 20, p. 5514-5527 14 p.

      Research output: Contribution to journalJournal articleResearchpeer-review

    24. Published
    25. Published

      eDNA‐based biomonitoring at an experimental German vineyard to characterize how management regimes shape ecosystem diversity

      Rasmussen, Jacob Agerbo, Nielsen, M., Mak, Sarah Siu Tze, Döring, J., Klincke, F., Gopalakrishnan, Shyam, Dunn, Rob, Kauer, R. & Gilbert, M Thomas P, 2021, In: Environmental DNA. 3, 1, p. 70-82 12 p.

      Research output: Contribution to journalJournal articleResearchpeer-review

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    ID: 12980