Tom Gilbert

Tom Gilbert

Professor

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    ORCID: 0000-0002-5805-7195

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    1. Published

      The genome sequence of the grey wolf, Canis lupus Linnaeus 1758

      Sinding, Mikkel Holger Strander, Gopalakrishnan, Shyam, Raundrup, K., Dalén, L., Threlfall, J., Gilbert, M Thomas P, Darwin Tree of Life Barcoding collective, D. T. O. L. B. C., Wellcome Sanger Institute Tree of Life programme, W. S. I. T. O. L. P., Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, W. S. I. S. O. D. P. C. & Tree of Life Core Informatics collective, Darwin Tree of Life Consortium, T. O. L. C. I. C. D. T. O. L. C., 2021, In: Wellcome Open Research. 6, 12 p., 310.

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. Published

      The genetic prehistory of the New World Arctic

      Raghavan, M., DeGiorgio, M., Albrechtsen, A., Moltke, I., Skoglund, P., Korneliussen, T. S., Grønnow, B., Appelt, M., Gulløv, H. C., Friesen, T. M., Fitzhugh, W., Malmström, H. S., Rasmussen, S., Olsen, J., Melchior, L. C., Fuller, B. T., Fahrni, S. M., Stafford jr., T., Grimes, V., Renouf, M. A. P. & 36 others, Cybulski, J., Lynnerup, Niels, Lahr, M. M., Britton, K., Knecht, R., Arneborg, J., Metspalu, M., Cornejo, O. E., Malaspinas, A. S., Wang, Y., Rasmussen, M., Raghavan, V., Hansen, Thomas van Overeem, Khusnutdinova, E., Pierre, T. L., Dneprovsky, K., Andreasen, C., Lange, H., Hayes, M. G., Coltrain, J., Spitsyn, V. A., Götherström, A., Orlando, L. A. A., Kivisild, T., Villems, R., Crawford, M. H., Nielsen, Finn Cilius, Dissing, J., Heinemeier, J., Meldgaard, Morten, Bustamante, C., O'Rourke, D. H., Jakobsson, M., Gilbert, M Thomas P, Nielsen, R. & Willerslev, Eske, 2014, In: Science. 345, 6200, 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      The genetic origins of the Andaman Islanders

      Endicott, P., Gilbert, M Thomas P, Stringer, C., Lalueza-Fox, C., Willerslev, Eske, Hansen, Anders Johannes & Cooper, A., 2002, In: American Journal of Human Genetics. 72, 1, p. 178-84 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      The genetic origins of Saint Helena’s liberated Africans

      Sandoval-Velasco, Marcela, Jagadeesan, A., Ávila-Arcos, M. C., Gopalakrishnan, Shyam, Ramos Madrigal, Jazmin, Moreno Mayar, J. Víctor, Renaud, Gabriel, Cruz-Dávalos, D. I., Johannesdóttir, E., Watson, J., Robson-Brown, K., Pearson, A., Helgason, A., Gilbert, M Thomas P & Schroeder, Hannes, 2019, bioRxiv, 16 p.

      Research output: Working paper › Preprint

    5. Published

      The genetic impact of an Ebola outbreak on a wild gorilla population

      Fontsere, C., Frandsen, P., Hernandez-Rodriguez, J., Niemann, Jonas, Scharff-Olsen, Camilla Hjorth, Vallet, D., Le Gouar, P., Ménard, N., Navarro, A., Siegismund, Hans Redlef, Hvilsom, C., Gilbert, M Thomas P, Kuhlwilm, M., Hughes, D. & Marques-Bonet, T., 2021, In: BMC Genomics. 22, 12 p., 735.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      The genetic history of Scandinavia from the Roman Iron Age to the present

      Rodríguez-Varela, R., Moore, K. H. S., Ebenesersdóttir, S. S., Kilinc, G. M., Kjellström, A., Papmehl-Dufay, L., Alfsdotter, C., Berglund, B., Alrawi, L., Kashuba, N., Sobrado, V., Lagerholm, V. K., Gilbert, E., Cavalleri, G. L., Hovig, E., Kockum, I., Olsson, T., Alfredsson, L., Hansen, T. F., Werge, T. & 24 others, Munters, A. R., Bernhardsson, C., Skar, B., Christophersen, A., Turner-Walker, G., Gopalakrishnan, Shyam, Daskalaki, E., Omrak, A., Pérez-Ramallo, P., Skoglund, P., Girdland-Flink, L., Gunnarsson, F., Hedenstierna-Jonson, C., Gilbert, M Thomas P, Lidén, K., Jakobsson, M., Einarsson, L., Victor, H., Krzewińska, M., Zachrisson, T., Storå, J., Stefánsson, K., Helgason, A. & Götherström, A., 2023, In: Cell. 186, 1, p. 32-46.e19

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      The first complete mitochondrial genome data of Hippocampus kuda originating from Malaysia

      Jahari, P. N. S., Malik, N. F. A., Shamsir, M. S., Gilbert, M Thomas P & Salleh, F. M., 2020, In: Data in Brief. 31, 8 p., 105721.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      The extinct Sicilian wolf shows a complex history of isolation and admixture with ancient dogs

      Ciucani, M. M., Ramos-Madrigal, J., Hernández-Alonso, G., Carmagnini, A., Aninta, S. G., Sun, X., Scharff-Olsen, C. H., Lanigan, L. T., Fracasso, I., Clausen, C. G., Aspi, J., Kojola, I., Baltrūnaitė, L., Balčiauskas, L., Moore, J., Åkesson, M., Saarma, U., Hindrikson, M., Hulva, P., Bolfíková, B. Č. & 19 others, Nowak, C., Godinho, R., Smith, S., Paule, L., Nowak, S., Mysłajek, R. W., Lo Brutto, S., Ciucci, P., Boitani, L., Vernesi, C., Stenøien, H. K., Smith, O., Frantz, L., Rossi, L., Angelici, F. M., Cilli, E., Sinding, Mikkel Holger Strander, Gilbert, M Thomas P & Gopalakrishnan, Shyam, 2023, In: iScience. 26, 8, 22 p., 107307.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      The evolutionary history of extinct and living lions

      de Manuel, M., Barnett, R., Sandoval-Velasco, M., Yamaguchi, N., Vieira, F. G., Mendoza, M. L. Z., Liu, S., Martin, M. D., Sinding, M-H. S., Mak, S. S. T., Caroe, C., Liu, S., Guo, C., Zheng, J., Zazula, G., Baryshnikov, G., Eizirik, E., Koepfli, K-P., Johnson, W. E., Antunes, A. & 9 others, Sicheritz-Pontén, Thomas, Gopalakrishnan, Shyam, Larson, G., Yang, H., O'Brien, S. J., Hansen, Anders Johannes, KU, thw266, Marques-Bonet, T. & Gilbert, M Thomas P, 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 20, p. 10927-10934 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      The evolutionary history of dogs in the Americas

      Leathlobhair, M. N., Perri, A. R., Irving-Pease, E. K., Witt, K. E., Linderholm, A., Haile, J., Lebrasseur, O., Ameen, C., Blick, J., Boyko, A. R., Brace, S., Cortes, Y. N., Crockford, S. J., Devault, A., Dimopoulos, E. A., Eldridge, M., Enk, J., Gopalakrishnan, S., Gori, K., Grimes, V. & 30 others, Guiry, E., Hansen, Anders Johannes, Hulme-Beaman, A., Johnson, J., Kitchen, A., Kasparov, A. K., Kwon, Y., Nikolskiy, P. A., Lope, C. P., Manin, A., Martin, T., Meyer, M., Myers, K. N., Omura, M., Rouillard, J., Pavlova, E. Y., Sciulli, P., Sinding, M. S., Strakova, A., Ivanova, V. V., Widga, C., Willerslev, Eske, Pitulko, V. V., Barnes, I., Gilbert, M Thomas P, Dobney, K. M., Malhi, R. S., Murchison, E. P., Larson, G. & Frantz, L. A. F., 2018, In: Science. 361, 6397, p. 81-85 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      The evolutionary history of cockatoos (Aves: Psittaciformes: Cacatuidae)

      White, N. E., Phillips, M. J., Gilbert, M Thomas P, Alfaro Nuñez, L. A., Willerslev, Eske, Mawson, P. R., Spencer, P. B. S. & Bunce, M., Jun 2011, In: Molecular Phylogenetics and Evolution. 59, 3, p. 615-622 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      The era of reference genomes in conservation genomics

      Formenti, G., Theissinger, K., Fernandes, C., Bista, I., Bombarely, A., Bleidorn, C., Ciofi, C., Crottini, A., Godoy, J. A., Höglund, J., Malukiewicz, J., Mouton, A., Oomen, R. A., Paez, S., Palsbøll, P. J., Pampoulie, C., Ruiz-López, M. J., Svardal, H., Theofanopoulou, C., de Vries, J. & 8 others, Waldvogel, A. M., KU, thw266, Mazzoni, C. J., Jarvis, E., Bálint, M., Gilbert, M Thomas P, tsr259, tsr259 & European Reference Genome Atlas (ERGA) Consortium, E. R. G. A. (. C., 2022, In: Trends in Ecology and Evolution. 37, 3, p. 197-202 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      The emergence of HIV/AIDS in the Americas and beyond.

      Gilbert, M Thomas P, Rambaut, A., Wlasiuk, G., Spira, T. J., Pitchenik, A. E. & Worobey, M., 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 47, p. 18566-70 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      The effect of ancient DNA damage on inferences of demographic histories

      Axelsson, E., Willerslev, Eske, Gilbert, M Thomas P & Nielsen, Rasmus, 2008, In: Molecular Biology and Evolution. 25, 10, p. 2181-7 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      The discovery of Neotropical Lepidosira (Collembola, Entomobryidae) and its systematic position

      Nunes, R. C., Godeiro, N. N., Antunes Pacheco, George, Liu, Shanlin, Gilbert, M Thomas P, Alvarez-Valin, F., Zhang, F. & Bellini, B. C., 2019, In: Zoologica Scripta. 48, 6, p. 783-800

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      The ancestry and geographical origins of St Helena's liberated Africans

      Sandoval-Velasco, Marcela, Jagadeesan, A., Ramos Madrigal, Jazmin, Ávila-Arcos, M. C., Fortes-Lima, C. A., Watson, J., Johannesdóttir, E., Cruz-Dávalos, D. I., Gopalakrishnan, Shyam, Moreno Mayar, J. Víctor, Niemann, Jonas, Renaud, G., Brown, K. A. R., Bennett, H., Pearson, A., Helgason, A., Gilbert, M Thomas P & Schroeder, Hannes, 2023, In: American Journal of Human Genetics. 110, 9, p. 1590-1599 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      The Vertebrate TLR Supergene Family Evolved Dynamically by Gene Gain/Loss and Positive Selection Revealing a Host-Pathogen Arms Race in Birds

      Khan, I., Maldonado, E., Silva, L., Almeida, D., Johnson, W. E., O'Brien, S. J., KU, thw266, Jarvis, E. D., Gilbert, M Thomas P & Antunes, A., 2019, In: Diversity. 11, 8, 25 p., 131.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      The Genomic Footprints of the Fall and Recovery of the Crested Ibis

      Feng, S., Fang, Q., Barnett, R., Li, C., Han, S., Kuhlwilm, M., Zhou, L., Pan, H., Deng, Y., Chen, G., Gamauf, A., Woog, F., Prys-Jones, R., Marques-Bonet, T., Gilbert, M Thomas P & KU, thw266, 2019, In: Current Biology. 29, 2, p. 340-349, e1-e7

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      The Genome 10K Project: a way forward

      Koepfli, K-P., Paten, B., O'Brien, S. J., Antunes, A., Belov, K., Bustamante, C., Castoe, T. A., Clawson, H., Crawford, A. J., Diekhans, M., Distel, D., Durbin, R., Earl, D., Fujita, M. K., Gamble, T., Georges, A., Gemmell, N., Gilbert, M. T. P., Graves, J. M., Green, R. E. & 25 others, Hickey, G., Jarvis, E. D., Johnson, W., Komissarov, A., Korf, I., Kuhn, R., Larkin, D. M., Lewin, H., Lopez, J. V., Ma, J., Marques-Bonet, T., Miller, W., Murphy, R., Pevzner, P., Shapiro, B., Steiner, C., Tamazian, G., Venkatesh, B., Wang, J., Wayne, R., Wiley, E., Yang, H., KU, thw266, Haussler, D. & Ryder, O., 2015, In: Annual Review of Animal Biosciences. 3, p. 57-111 55 p.

      Research output: Contribution to journal › Review › Research › peer-review

    20. Published

      The Founding Feathers: The true ancestry of the domestic Barbary Dove

      van Grouw, H., Hernández-Alonso, G., Cavill, Emily Louisa & Gilbert, M Thomas P, 2023, In: Bulletin of the British Ornithologists' Club. 143, 2, p. 153-171 19 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      The Farm beneath the Sand: An Archaeological Case Study on Ancient "Dirt" DNA

      Hebsgaard, M. B., Gilbert, M Thomas P, Pedersen, J. A., Heyn, P., Allentoft, Morten Erik, Bunce, M., Munch, K., Schweger, C. & Willerslev, Eske, 2009, In: Antiquity. 83, p. 430-444 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      The Earth BioGenome Project 2020: Starting the clock

      Lewin, H. A., Richards, S., Aiden, E. L., Allende, M. L., Archibald, J. M., Bálint, M., Barker, K. B., Baumgartner, B., Belov, K., Bertorelle, G., Blaxter, M. L., Cai, J., Caperello, N. D., Carlson, K., Castilla-Rubio, J. C., Chaw, S. M., Chen, L., Childers, A. K., Coddington, J. A., Conde, D. A. & 65 others, Corominas, M., Crandall, K. A., Crawford, A. J., DiPalma, F., Durbin, R., Ebenezer, T. E., Edwards, S. V., Fedrigo, O., Flicek, P., Formenti, G., Gibbs, R. A., Gilbert, M Thomas P, Goldstein, M. M., Graves, J. M., Greely, H. T., Grigoriev, I. V., Hackett, K. J., Hall, N., Haussler, D., Helgen, K. M., Hogg, C. J., Isobe, S., Jakobsen, K. S., Janke, A., Jarvis, E. D., Johnson, W. E., Jones, S. J. M., Karlsson, E. K., Kersey, P. J., Kim, J. H., Kress, W. J., Kuraku, S., Lawniczak, M. K. N., Leebens-Mack, J. H., Li, X., Lindblad-Toh, K., Liu, X., Lopez, J. V., Marques-Bonet, T., Mazard, S., Mazet, J. A. K., Mazzoni, C. J., Myers, E. W., O’Neill, R. J., Paez, S., Park, H., Robinson, G. E., Roquet, C., Ryder, O. A., Sabir, J. S. M., Shaffer, H. B., Shank, T. M., Sherkow, J. S., Soltis, P. S., Tang, B., Tedersoo, L., Uliano-Silva, M., Wang, K., Wei, X., Wetzer, R., Wilson, J. L., Xu, X., Yang, H., Yoder, A. D. & KU, thw266, 2022, In: PNAS. 119, 4, 7 p., e2115635118.

      Research output: Contribution to journal › Review › Research › peer-review

    23. Published

      The Draft Genome of Extinct European Aurochs and its Implications for De-Extinction

      Gilbert, M Thomas P & Sinding, Mikkel Holger Strander, 2016, In: Open Quaternary. 2, 9 p., 7.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      The Australian dingo is an early offshoot of modern breed dogs

      Field, M. A., Yadav, S., Dudchenko, O., Esvaran, M., Rosen, B. D., Skvortsova, K., Edwards, R. J., Keilwagen, J., Cochran, B. J., Manandhar, B., Bustamante, S., Rasmussen, J. A., Melvin, R. G., Chernoff, B., Omer, A., Colaric, Z., Chan, E. K. F., Minoche, A. E., Smith, T. P. L., Gilbert, M. T. P. & 5 others, Bogdanovic, O., Zammit, R. A., Thomas, T., Aiden, E. L. & Ballard, J. W. O., 2022, In: Science Advances. 8, 16, 14 p., eabm5944.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      The 'relics of Joan of Arc': a forensic multidisciplinary analysis

      Charlier, P., Poupon, J., Eb, A., De Mazancourt, P., Gilbert, M Thomas P, Huynh-Charlier, I., Loublier, Y., Verhille, A. M., Moulheirat, C., Patou-Mathis, M., Robbiola, L., Montagut, R., Masson, F., Etcheberry, A., Brun, L., Willerslev, Eske, de la Grandmaison, G. L. & Durigon, M., 2010, In: Forensic Science International. 194, 1-3, p. e9-15 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

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    ID: 12980