Filipe Jorge Garrett Vieira

Filipe Jorge Garrett Vieira

Research Consultant

Member of:

    ORCID: 0000-0002-8464-7770

    Publication year:
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    51 - 64 out of 64Page size: 25
    1. 2014
    2. Published

      ngsTools : methods for population genetics analyses from next-generation sequencing data

      Fumagalli, M., Vieira, Filipe Garrett, Linderoth, T. & Nielsen, Rasmus, 2014, In: Bioinformatics. 30, 10, p. 1486-1487 2 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. 2013
    4. Published

      Quantifying population genetic differentiation from next-generation sequencing data

      Fumagalli, M., Vieira, Filipe Garrett, Korneliussen, Thorfinn Sand, Linderoth, T., Huerta-Sánchez, E., Albrechtsen, Anders & Nielsen, Rasmus, Nov 2013, In: Genetics. 195, 3, p. 979-992 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Estimating inbreeding coefficients from NGS data: impact on genotype calling and allele frequency estimation

      Vieira, Filipe Garrett, Fumagalli, M., Albrechtsen, Anders & Nielsen, Rasmus, 2013, In: Genome Research. 23, p. 1852-1861 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. 2012

    7. Unique features of odorant-binding proteins of the parasitoid wasp Nasonia vitripennis revealed by genome annotation and comparative analyses

      Vieira, Filipe Garrett, Forêt, S., He, X., Rozas, J., Field, L. M. & Zhou, J. J., 27 Aug 2012, In: PLoS ONE. 7, 8, e43034.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. BadiRate: Estimating family turnover rates by likelihood-based methods

      Librado, P., Vieira, Filipe Garrett & Rozas, J., Jan 2012, In: Bioinformatics. 28, 2, p. 279-281 3 p., btr623.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. 2011

    10. Comparative Genomics of the Major Chemosensory Gene Families in Arthropods

      Sánchez-Gracia, A., Vieira, Filipe Garrett, Almeida, F. C. & Rozas, J., 2011, Encyclopedia of Life Sciences. Wiley

      Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

    11. Comparative genomics of the odorant-binding and chemosensory protein gene families across the arthropoda: Origin and evolutionary history of the chemosensory system

      Vieira, Filipe Garrett & Rozas, J., 2011, In: Genome Biology and Evolution. 3, 1, p. 476-490 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. 2010

    13. Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

      Kirkness, E. F., Haas, B. J., Sun, W., Braig, H. R., Perotti, M. A., Clark, J. M., Lee, S. H., Robertson, H. M., Kennedy, R. C., Elhaik, E., Gerlach, D., Kriventseva, E. V., Elsik, C. G., Graur, D., Hill, C. A., Veenstra, J. A., Walenz, B., Tubío, J. M. C., Ribeiro, J. M. C., Rozas, J. & 51 others, Johnston, J. S., Reese, J. T., Popadic, A., Tojo, M., Raoult, D., Reed, D. L., Tomoyasu, Y., Krause, E., Mittapalli, O., Margam, V. M., Li, H. M., Meyer, J. M., Johnson, R. M., Romero-Severson, J., VanZee, J. P., Alvarez-Ponce, D., Vieira, Filipe Garrett, Aguadé, M., Guirao-Rico, S., Anzola, J. M., Yoon, K. S., Strycharz, J. P., Unger, M. F., Christley, S., Lobo, N. F., Seufferheld, M. J., Wang, N. K., Dasch, G. A., Struchiner, C. J., Madey, G., Hannick, L. I., Bidwell, S., Joardar, V., Caler, E., Shao, R., Barker, S. C., Cameron, S., Bruggner, R. V., Regier, A., Johnson, J., Viswanathan, L., Utterback, T. R., Sutton, G. G., Lawson, D., Waterhouse, R. M., Venter, J. C., Strausberg, R. L., Berenbaum, M. R., Collins, F. H., Zdobnov, E. M. & Pittendrigh, B. R., 6 Jul 2010, In: Proceedings of the National Academy of Sciences of the United States of America. 107, 27, p. 12168-12173 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Genome annotation and comparative analyses of the odorant-binding proteins and chemosensory proteins in the pea aphid Acyrthosiphon pisum

      Zhou, J. J., Vieira, Filipe Garrett, He, X. L., Smadja, C., Liu, R., Rozas, J. & Field, L. M., Mar 2010, In: Insect Molecular Biology. 19, SUPPL. 2, p. 113-122 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Genome sequence of the pea aphid Acyrthosiphon pisum

      Richards, S., Gibbs, R. A., Gerardo, N. M., Moran, N., Nakabachi, A., Stern, D., Tagu, D., Wilson, A. C. C., Muzny, D., Kovar, C., Cree, A., Chacko, J., Chandrabose, M. N., Dao, M. D., Dinh, H. H., Gabisi, R. A., Hines, S., Hume, J., Jhangian, S. N., Joshi, V. & 200 others, Lewis, L. R., Liu, Y. S., Lopez, J., Morgan, M. B., Nguyen, N. B., Okwuonu, G. O., Ruiz, S. J., Santibanez, J., Wright, R. A., Fowler, G. R., Hitchens, M. E., Lozado, R. J., Moen, C., Steffen, D., Warren, J. T., Zhang, J., Nazareth, L. V., Chavez, D., Davis, C., Lee, S. L., Patel, B. M., Pu, L. L., Bell, S. N., Johnson, A. J., Vattathil, S., Williams, R. L., Shigenobu, S., Dang, P. M., Morioka, M., Fukatsu, T., Kudo, T., Miyagishima, S. Y., Jiang, H., Worley, K. C., Legeai, F., Gauthier, J. P., Collin, O., Zhang, L., Chen, H. C., Ermolaeva, O., Hlavina, W., Kapustin, Y., Kiryutin, B., Kitts, P., Maglott, D., Murphy, T., Pruitt, K., Sapojnikov, V., Souvorov, A., Thibaud-Nissen, F., Câmara, F., Guigó, R., Stanke, M., Solovyev, V., Kosarev, P., Gilbert, D., Gabaldón, T., Huerta-Cepas, J., Marcet-Houben, M., Pignatelli, M., Moya, A., Rispe, C., Ollivier, M., Quesneville, H., Permal, E., Llorens, C., Futami, R., Hedges, D., Robertson, H. M., Alioto, T., Mariotti, M., Nikoh, N., McCutcheon, J. P., Burke, G., Kamins, A., Latorre, A., Ashton, P., Calevro, F., Charles, H., Colella, S., Douglas, A. E., Jander, G., Jones, D. H., Febvay, G., Kamphuis, L. G., Kushlan, P. F., Macdonald, S., Ramsey, J., Schwartz, J., Seah, S., Thomas, G., Vellozo, A., Cass, B., Degnan, P., Hurwitz, B., Leonardo, T., Koga, R., Altincicek, B., Anselme, C., Atamian, H., Barribeau, S. M., De Vos, M., Duncan, E. J., Evans, J., Ghanim, M., Heddi, A., Kaloshian, I., Vincent-Monegat, C., Parker, B. J., Pérez-Brocal, V., Rahbé, Y., Spragg, C. J., Tamames, J., Tamarit, D., Tamborindeguy, C., Vilcinskas, A., Bickel, R. D., Brisson, J. A., Butts, T., Chang, C. C., Christiaens, O., Davis, G. K., Duncan, E., Ferrier, D., Iga, M., Janssen, R., Lu, H. L., McGregor, A., Miura, T., Smagghe, G., Smith, J., Van Der Zee, M., Velarde, R., Wilson, M., Dearden, P., Edwards, O. R., Gordon, K., Hilgarth, R. S., Rider, S. D., Srinivasan, D., Walsh, T. K., Ishikawa, A., Jaubert-Possamai, S., Fenton, B., Huang, W., Rizk, G., Lavenier, D., Nicolas, J., Smadja, C., Zhou, J. J., Vieira, Filipe Garrett, He, X. L., Liu, R., Rozas, J., Field, L. M., Campbell, P., Carolan, J. C., Fitzroy, C. I. J., Reardon, K. T., Reeck, G. R., Singh, K., Wilkinson, T. L., Huybrechts, J., Abdel-Latief, M., Robichon, A., Veenstra, J. A., Hauser, Frank, Cazzamali, G., Schneider, M., Williamson, M., Stafflinger, E., Hansen, K. K., Grimmelikhuijzen, C. J. P., Price, D. R. G., Caillaud, M., Van Fleet, E., Ren, Q., Gatehouse, J. A., Brault, V., Monsion, B., Diaz, J., Hunnicutt, L., Ju, H. J., Pechuan, X., Aguilar, J., Cortés, T., Ortiz-Rivas, B., Martínez-Torres, D., Dombrovsky, A., Dale, R. P., Davies, T. G. E., Williamson, M. S., Jones, A., Sattelle, D., Williamson, S., Wolstenholme, A., Cottret, L., Sagot, M. F., Heckel, D. G. & Hunter, W., 2010, In: PLoS Biology. 8, 2, e1000313.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. 2009

    17. Molecular evolution of the major chemosensory gene families in insects

      Sánchez-Gracia, A., Vieira, Filipe Garrett & Rozas, J., Sep 2009, In: Heredity. 103, 3, p. 208-216 9 p.

      Research output: Contribution to journal › Review › Research › peer-review

    18. 2008

    19. Processing of a membrane protein required for cell-to-cell signaling during endospore formation in Bacillus subtilis

      Serrano, M., Vieira, Filipe Garrett, Moran, C. P. & Henriques, A. O., Dec 2008, In: Journal of Bacteriology. 190, 23, p. 7786-7796 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. 2007

    21. Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: Purifying selection and birth-and-death evolution

      Vieira, Filipe Garrett, Sánchez-Gracia, A. & Rozas, J., 8 Nov 2007, In: Genome Biology (Online). 8, 11, R235.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium

      Clark, A. G., Eisen, M. B., Smith, D. R., Bergman, C. M., Oliver, B., Markow, T. A., Kaufman, T. C., Kellis, M., Gelbart, W., Iyer, V. N., Pollard, D. A., Sackton, T. B., Larracuente, A. M., Singh, N. D., Abad, J. P., Abt, D. N., Adryan, B., Aguade, M., Akashi, H., Anderson, W. W. & 31 others, Aquadro, C. F., Ardell, D. H., Arguello, R., Artieri, C. G., Barbash, D. A., Barker, D., Barsanti, P., Batterham, P., Batzoglou, S., Begun, D., Bhutkar, A., Blanco, E., Bosak, S. A., Bradley, R. K., Brand, A. D., Brent, M. R., Brooks, A. N., Brown, R. H., Butlin, R. K., Caggese, C., Calvi, B. R., Bernardo de Carvalho, A., Caspi, A., Castrezana, S., Celniker, S. E., Chang, J. L., Garcia, A. C. L., Nielsen, Rasmus, Pedersen, Jakob Skou, Vieira, Filipe Garrett & Drosophila 12 Genomes Consortium, D. 1. G. C., 2007, In: Nature. 450, 7167, p. 203-18 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

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    ID: 105377460