Antonio Fernandez Guerra
Tenure Track Assistant Professor
Section for Geogenetics
Øster Voldgade 5-7
1350 København K
- 2023
- Published
Genomic adaptation of giant viruses in polar oceans
Meng, L., Delmont, T. O., Gaïa, M., Pelletier, E., Fernandez Guerra, Antonio, Chaffron, S., Neches, R. Y., Wu, J., Kaneko, H., Endo, H. & Ogata, H., 2023, In: Nature Communications. 14, 12 p., 6233.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Inter-comparison of marine microbiome sampling protocols
Pascoal, F., Tomasino, M. P., Piredda, R., Quero, G. M., Torgo, L., Poulain, J., Galand, P. E., Fuhrman, J. A., Mitchell, A., Tinta, T., Turk Dermastia, T., Fernandez-Guerra, A., Vezzi, A., Logares, R., Malfatti, F., Endo, H., Dąbrowska, A. M., De Pascale, F., Sánchez, P., Henry, N. & 9 others, , 2023, In: ISME communications. 3, 16 p., 84.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mirusviruses link herpesviruses to giant viruses
Gaïa, M., Meng, L., Pelletier, E., Forterre, P., Vanni, C., Fernandez Guerra, Antonio, Jaillon, O., Wincker, P., Ogata, H., Krupovic, M. & Delmont, T. O., 2023, In: Nature. 616, 7958, p. 783-789 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA
Kjær, K. H., Pedersen, M. W., De Sanctis, B., De Cahsan, B., Korneliussen, T. S., Michelsen, C. S., Sand, K. K., Jelavić, S., Ruter, A. H., Schmidt, A. M. A., Kjeldsen, K. K., Tesakov, A. S., Snowball, I., Gosse, J. C., Alsos, I. G., Wang, Y., Dockter, C., Rasmussen, M., Jørgensen, M. E., Skadhauge, B. & 19 others, , 2022, In: Nature. 612, 7939, p. 283-291 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean
Delmont, T. O., Gaia, M., Hinsinger, D. D., Frémont, P., Vanni, C., Fernandez-Guerra, A., Eren, A. M., Kourlaiev, A., d'Agata, L., Clayssen, Q., Villar, E., Labadie, K., Cruaud, C., Poulain, J., Da Silva, C., Wessner, M., Noel, B., Aury, J-M., Sunagawa, S., Acinas, S. G. & 30 others, , 2022, In: Cell Genomics. 2, 5, 17 p., 100123.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems
Richter, D. J., Watteaux, R., Vannier, T., Leconte, J., Frémont, P., Reygondeau, G., Maillet, N., Henry, N., Benoit, G., Da Silva, O., Delmont, T. O., Fernàndez-Guerra, A., Suweis, S., Narci, R., Berney, C., Eveillard, D., Gavory, F., Guidi, L., Labadie, K., Mahieu, E. & 27 others, , 2022, In: eLife. 11, 30 p., e78129.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Renewal of planktonic foraminifera diversity after the Cretaceous Paleogene mass extinction by benthic colonizers
Morard, R., Hassenrück, C., Greco, M., Fernandez Guerra, Antonio, Rigaud, S., Douady, C. J. & Kucera, M., 2022, In: Nature Communications. 13, 9 p., 7135.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Reply to: When did mammoths go extinct?
Wang, Y., Prohaska, A., Dong, H., Alberti, A., Alsos, I. G., Beilman, D. W., Bjørk, A. A., Cao, J., Cherezova, A. A., Coissac, E., De Sanctis, B., Denoeud, F., Dockter, C., Durbin, R., Edwards, M. E., Edwards, N. R., Esdale, J., Fedorov, G. B., Fernandez-Guerra, A., Froese, D. G. & 32 others, , 2022, In: Nature. 612, 7938, p. E4-E6Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Unifying the known and unknown microbial coding sequence space
Vanni, C., Schechter, M. S., Acinas, S. G., Barberán, A., Buttigieg, P. L., Casamayor, E. O., Delmont, T. O., Duarte, C. M., Eren, A. M., Finn, R. D., Kottmann, R., Mitchell, A., Sánchez, P., Siren, K., Steinegger, M., Glöckner, F. O. & Fernandez Guerra, Antonio, 2022, In: eLife. 11, 60 p., e67667.Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
Functional repertoire convergence of distantly related eukaryotic plankton lineages revealed by genome-resolved metagenomics
Delmont, T. O., Gaia, M., Hinsinger, D. D., Fremont, P., Vanni, C., Fernandez Guerra, A., Eren, A. M., Kourlaiev, A., d'Agata, L., Clayssen, Q., Villar, E., Labadie, K., Cruaud, C., Poulain, J., Da Silva, C., Wessner, M., Noel, B., Aury, J-M., de Vargas, C., Bowler, C. & 4 others, , 23 Jan 2021, 30 p. (bioRxiv).Research output: Working paper › Preprint › Research
- Published
Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir
Yates, J. A. F., Andrades Valtuena, A., Vågene, Åshild Joanne, Cribdon, B., Velsko, I. M., Borry, M., Bravo-Lopez, M. J., Fernandez Guerra, Antonio, Green, E. J., Ramachandran, S. L., Heintzman, P. D., Spyrou, M. A., Huebner, A., Gancz, A. S., Hider, J., Allshouse, A. F., Zaro, V. & Warinner, C., 2021, In: Scientific Data. 8, 8 p., 31.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Community-led, integrated, reproducible multi-omics with anvi'o
Eren, A. M., Kiefl, E., Shaiber, A., Veseli, I., Miller, S. E., Schechter, M. S., Fink, I., Pan, J. N., Yousef, M., Fogarty, E. C., Trigodet, F., Watson, A. R., Esen, O. C., Moore, R. M., Clayssen, Q., Lee, M. D., Kivenson, V., Graham, E. D., Merrill, B. D., Karkman, A. & 14 others, , 2021, In: Nature Microbiology. 6, 1, p. 3-6 4 p.Research output: Contribution to journal › Editorial › Research › peer-review
- Published
Late Quaternary dynamics of Arctic biota from ancient environmental genomics: [+ Correction]
Wang, Y., Pedersen, M. W., Alsos, I. G., De Sanctis, B., Racimo, F., Prohaska, A., Coissac, E., Owens, H. L., Merkel, M. K. F., Fernandez-Guerra, A., Rouillard, A., Lammers, Y., Alberti, A., Denoeud, F., Money, D., Ruter, A. H., McColl, H., Larsen, N. K., Cherezova, A. A., Edwards, M. E. & 30 others, , 2021, In: Nature. 600, 7887, p. 86–92 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mining metagenomes for natural product biosynthetic gene clusters: unlocking new potential with ultrafast techniques
Pereira-Flores, E., Medema, M., Buttigieg, P. L., Meinicke, P., Glöckner, F. O. & Fernandez Guerra, Antonio, 2021, 29 p. (bioRxiv).Research output: Working paper › Preprint › Research
- Published
Secondary metabolite biosynthetic diversity in Arctic Ocean metagenomes
Rego, A., Fernandez Guerra, Antonio, Duarte, P., Assmy, P., Leão, P. N. & Magalhães, C., 2021, In: Microbial genomics. 7, 12, 14 p., 000731.Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
- Published
A computational framework to explore large-scale biosynthetic diversity
Navarro-Muñoz, J. C., Selem-Mojica, N., Mullowney, M. W., Kautsar, S. A., Tryon, J. H., Parkinson, E. I., De Los Santos, E. L. C., Yeong, M., Cruz-Morales, P., Abubucker, S., Roeters, A., Lokhorst, W., Fernandez Guerra, Antonio, Cappelini, L. T. D., Goering, A. W., Thomson, R. J., Metcalf, W. W., Kelleher, N. L., Barona-Gomez, F. & Medema, M. H., Jan 2020, In: Nature Chemical Biology. 16, 1, p. 60-68 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Future Science Brief - Big Data in Marine Science
Guidi, L., Fernandez Guerra, Antonio, Canchaya, C., Curry, E., Foglini, F., Irisson, J., Malde, K., Marshall, T. C., Obst, M., Ribeiro, R. P., Tjiputra, J. & Bakker, D. C. E., 2020, 52 p.Research output: Book/Report › Book › Research › peer-review
- Published
Linking Spatial and Temporal Dynamic of Bacterioplankton Communities With Ecological Strategies Across a Coastal Frontal Area
Lemonnier, C., Perennou, M., Eveillard, D., Fernandez Guerra, Antonio, Leynaert, A., Marie, L., Morrison, H. G., Memery, L., Paillard, C. & Maignien, L., 2020, In: Frontiers in Marine Science. 7, 13 p., 376.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Meta-SourceTracker: application of Bayesian source tracking to shotgun metagenomics
McGhee, J. J., Rawson, N., Bailey, B. A., Fernandez Guerra, Antonio, Sisk-Hackworth, L. & Kelley, S. T., 2020, In: PeerJ. 8, 18 p., 8783.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Verrucomicrobia use hundreds of enzymes to digest the algal polysaccharide fucoidan
Sichert, A., Corzett, C. H., Schechter, M. S., Unfried, F., Markert, S., Becher, D., Fernandez Guerra, Antonio, Liebeke, M., Schweder, T., Polz, M. F. & Hehemann, J. H., 2020, In: Nature Microbiology. 5, p. 1026-1039Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
Decoding the ocean's microbiological secrets for marine enzyme biodiscovery
Ferrer, M., Mendez-Garcia, C., Bargiela, R., Chow, J., Alonso, S., Garcia-Moyano, A., Bjerga, G. E. K., Steen, I. H., Schwabe, T., Blom, C., Vester, J., Weckbecker, A., Shahgaldian, P., de Carvalho, C. C. C. R., Meskys, R., Zanaroli, G., Gloeckner, F. O., Fernandez-Guerra, A., Thambisetty, S., de la Calle, F. & 9 others, , 2019, In: FEMS Microbiology Letters. 366, 1Research output: Contribution to journal › Journal article › Research › peer-review
- 2018
Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics
Bergauer, K., Fernandez Guerra, Antonio, Garcia, J. A. L., Sprenger, R. R., Stepanauskas, R., Pachiadaki, M. G., Jensen, O. N. & Herndl, G. J., 16 Jan 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 3, p. E400-E408 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Determinants and Prediction of Esterase Substrate Promiscuity Patterns
Martinez-Martinez, M., Coscolin, C., Santiago, G., Chow, J., Stogios, P. J., Bargiela, R., Gertler, C., Navarro-Fernandez, J., Bollinger, A., Thies, S., Mendez-Garcia, C., Popovic, A., Brown, G., Chernikova, T. N., Garcia-Moyano, A., Bjerga, G. E. K., Perez-Garcia, P., Hai, T., Del Pozo, M. V., Stokke, R. & 22 others, , Jan 2018, In: ACS chemical biology. 13, 1, p. 225-234 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
Recurrent patterns of microdiversity in a temperate coastal marine environment
Chafee, M., Fernandez Guerra, Antonio, Buttigieg, P. L., Gerdts, G., Eren, A. M., Teeling, H. & Amann, R. I., Jan 2018, In: ISME Journal. 12, 1, p. 237-252 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
Molecular recognition of the beta-glucans laminarin and pustulan by a SusD-like glycan-binding protein of a marine Bacteroidetes
Mystkowska, A. A., Robb, C., Vidal-Melgosa, S., Vanni, C., Fernandez Guerra, Antonio, Hoehne, M. & Hehemann, J., 2018, In: FEBS Journal. 285, 23, p. 4465-4481Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
Analysis of phytoplankton assemblage structure in the Mediterranean Sea based on high-throughput sequencing of partial 18S rRNA sequences
Penna, A., Casabianca, S., Fernandez Guerra, Antonio, Vernesi, C. & Scardi, M., Dec 2017, In: Marine Genomics. 36, p. 49-55 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
Geographic distribution at subspecies resolution level: closely related Rhodopirellula species in European coastal sediments
Zure, Marina, Fernandez Guerra, Antonio, Munn, C. B. & Harder, J., Feb 2017, In: ISME Journal. 11, 2, p. 478-489 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2016
BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology
Hardisty, A. R., Bacall, F., Beard, N., Balcazar-Vargas, M-P., Balech, B., Barcza, Z., Bourlat, S. J., De Giovanni, R., de Jong, Y., De Leo, F., Dobor, L., Donvito, G., Fellows, D., Fernandez Guerra, A., Ferreira, N., Fetyukova, Y., Fosso, B., Giddy, J., Goble, C., Guentsch, A. & 31 others, , 2016, In: BMC Ecology. 16, 16 p., 49.Research output: Contribution to journal › Journal article › Research › peer-review
Comparative Genomic Analysis Reveals a Diverse Repertoire of Genes Involved in Prokaryote-Eukaryote Interactions within the Pseudovibrio Genus
Romano, S., Fernandez Guerra, Antonio, Reen, F. J., Gloeckner, F. O., Crowley, S. P., O'Sullivan, O., Cotter, P. D., Adams, C., Dobson, A. D. W. & O'Gara, F., 2016, In: Frontiers in Microbiology. 7, 20 p., 387.Research output: Contribution to journal › Journal article › Research › peer-review
MyOSD 2014: Evaluating Oceanographic Measurements Contributed by Citizen Scientists in Support of Ocean Sampling Day
Schnetzer, J., Kopf, A., Bietz, M. J., Buttigieg, P. L., Fernandez Guerra, Antonio, Ristov, A. P., Gloeckner, F. O. & Kottmann, R., 2016, In: Journal of Microbiology and Biology Education. 17, 1, p. 163-171Research output: Contribution to journal › Journal article › Research › peer-review
Optimized R functions for analysis of ecological community data using the R virtual laboratory (RvLab)
Varsos, C., Patkos, T., Oulas, A., Pavloudi, C., Gougousis, A., Ijaz, U. Z., Filiopoulou, I., Pattakos, N., Berghe, E. V., Fernandez Guerra, Antonio, Faulwetter, S., Chatzinikolaou, E., Pafilis, E., Bekiari, C., Doerr, M. & Arvanitidis, C., 2016, In: Biodiversity Data Journal. 4, 28 p., e8357.Research output: Contribution to journal › Journal article › Research › peer-review
- 2015
The ocean sampling day consortium
Kopf, A., Bicak, M., Kottmann, R., Schnetzer, J., Kostadinov, I., Lehmann, K., Fernandez-Guerra, A., Jeanthon, C., Rahav, E., Ullrich, M., Wichels, A., Gerdts, G., Polymenakou, P., Kotoulas, G., Siam, R., Abdallah, R. Z., Sonnenschein, E. C., Cariou, T., O'Gara, F., Jackson, S. & 31 others, , 2015, In: GigaScience. 4, 5 p., 27.Research output: Contribution to journal › Comment/debate › Research › peer-review
- 2013
Pheromone Evolution, Reproductive Genes, and Comparative Transcriptomics in Mediterranean Earthworms (Annelida, Oligochaeta, Hormogastridae)
Novo, M., Riesgo, A., Fernandez Guerra, Antonio & Giribet, G., 2013, In: Molecular Biology and Evolution. 30, 7, p. 1614-1629Research output: Contribution to journal › Journal article › Research › peer-review
- 2012
Exploration of community traits as ecological markers in microbial metagenomes
Barberán, A., Fernandez Guerra, Antonio, Bohannan, B. J. M. & Casamayor, E. O., 2012, In: Molecular Ecology. 21, 8, p. 1909-1917Research output: Contribution to journal › Journal article › Research › peer-review
Habitat-Associated Phylogenetic Community Patterns of Microbial Ammonia Oxidizers
Fernandez Guerra, Antonio & Casamayor, E. O., 2012, In: PLoS ONE. 7, 10, 9 p., e47330.Research output: Contribution to journal › Journal article › Research › peer-review
Patterns and architecture of genomic islands in marine bacteria
Fernandez-Gomez, B., Fernandez Guerra, Antonio, Casamayor, E. O., Gonzalez, J. M., Pedros-Alio, C. & Acinas, S. G., 2012, In: BMC Genomics. 13, 19 p., 347.Research output: Contribution to journal › Journal article › Research › peer-review
- 2011
A close relationship between primary nucleotides sequence structure and the composition of functional genes in the genome of prokaryotes
Garcia, J. A. L., Fernandez Guerra, Antonio & Casamayor, E. O., 2011, In: Molecular Phylogenetics and Evolution. 61, 3, p. 650-658Research output: Contribution to journal › Journal article › Research › peer-review
Genomics of the Proteorhodopsin-Containing Marine Flavobacterium Dokdonia sp. Strain MED134
Gonzalez, J. M., Pinhassi, J., Fernandez-Gomez, B., Coll-Llado, M., Gonzalez-Velazquez, M., Puigbo, P., Jaenicke, S., Gomez-Consarnau, L., Fernandez Guerra, Antonio, Goesmann, A. & Pedros-Alio, C., 2011, In: Applied and Environmental Microbiology. 77, 24, p. 8676-8686Research output: Contribution to journal › Journal article › Research › peer-review
Phylogenetic ecology of widespread uncultured clades of the Kingdom Euryarchaeota
Barberán, A., Fernandez Guerra, Antonio, Auguet, J., Galand, P. E. & Casamayor, E. O., 2011, In: Molecular Ecology. 20, 9, p. 1988-1996Research output: Contribution to journal › Journal article › Research › peer-review
- 2010
T-RFPred: a nucleotide sequence size prediction tool for microbial community description based on terminal-restriction fragment length polymorphism chromatograms
Fernandez Guerra, Antonio, Buchan, A., Mou, X., Casamayor, E. O. & Gonzalez, J. M., 2010, In: BMC Microbiology. 10, 7 p., 262.Research output: Contribution to journal › Journal article › Research › peer-review
- 2008
Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria)
Gonzalez, J. M., Fernandez-Gomez, B., Fernandez Guerra, Antonio, Gomez-Consarnau, L., Sanchez, O., Coll-Llado, M., del Campo, J., Escudero, L., Rodriguez-Martinez, R., Alonso-Sáez, L., Latasa, M., Paulsen, I., Nedashkovskaya, O., Lekunberri, I., Pinhassi, J. & Pedros-Alio, C., 2008, In: Proceedings of the National Academy of Sciences of the United States of America. 105, 25, p. 8724-8729Research output: Contribution to journal › Journal article › Research › peer-review
- 2006
The Genome of the Sea Urchin Strongylocentrotus purpuratus
Sodergren, E., Weinstock, G. M., Davidson, E. H., Cameron, R. A., Gibbs, R. A., Angerer, R. C., Angerer, L. M., Arnone, M. I., Burgess, D. R., Burke, R. D., Cameron, R. A., Coffman, J. A., Davidson, E. H., Dean, M., Elphick, M. R., Ettensohn, C. A., Foltz, K. R., Hamdoun, A., Hynes, R. O., Klein, W. H. & 28 others, , 2006, In: Science. 314, 5801, p. 941-952Research output: Contribution to journal › Journal article › Research › peer-review
The genomic repertoire for cell cycle control and DNA metabolism in S. purpuratus
Fernandez Guerra, Antonio, Aze, A., Morales, J., Mulner-Lorillon, O., Cosson, B., Cormier, P., Bradham, C., Adams, N., Robertson, A. J., Marzluff, W. F., Coffman, J. A. & Geneviere, A., 2006, In: Developmental Biology. 300, 1, p. 238-251Research output: Contribution to journal › Review › Research › peer-review
ID: 235125386
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98
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Meta-SourceTracker: application of Bayesian source tracking to shotgun metagenomics
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
65
downloads
A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
52
downloads
Linking Spatial and Temporal Dynamic of Bacterioplankton Communities With Ecological Strategies Across a Coastal Frontal Area
Research output: Contribution to journal › Journal article › Research › peer-review
Published