Antonio Fernandez Guerra

Antonio Fernandez Guerra

Tenure Track Assistant Professor


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  1. Published

    A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA

    Kjær, K. H., Pedersen, M. W., De Sanctis, B., De Cahsan, B., Korneliussen, T. S., Michelsen, C. S., Sand, K. K., Jelavić, S., Ruter, A. H., Schmidt, A. M. A., Kjeldsen, K. K., Tesakov, A. S., Snowball, I., Gosse, J. C., Alsos, I. G., Wang, Y., Dockter, C., Rasmussen, M., Jørgensen, M. E., Skadhauge, B. & 19 others, Prohaska, Ana, Kristensen, J. Å., Bjerager, M., Allentoft, Morten Erik, Coissac, E., Rouillard, Alexandra, Simakova, A., Fernandez Guerra, Antonio, Bowler, C., Macias-Fauria, M., Vinner, Lasse, Welch, J. J., Hidy, A. J., Sikora, Martin, Collins, Matthew James, Durbin, R., Larsen, Nicolaj Krog, Willerslev, Eske & PhyloNorway Consortium, P. C., 2022, In: Nature. 612, 7939, p. 283-291 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. A close relationship between primary nucleotides sequence structure and the composition of functional genes in the genome of prokaryotes

    Garcia, J. A. L., Fernandez Guerra, Antonio & Casamayor, E. O., 2011, In: Molecular Phylogenetics and Evolution. 61, 3, p. 650-658

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    A computational framework to explore large-scale biosynthetic diversity

    Navarro-Muñoz, J. C., Selem-Mojica, N., Mullowney, M. W., Kautsar, S. A., Tryon, J. H., Parkinson, E. I., De Los Santos, E. L. C., Yeong, M., Cruz-Morales, P., Abubucker, S., Roeters, A., Lokhorst, W., Fernandez Guerra, Antonio, Cappelini, L. T. D., Goering, A. W., Thomson, R. J., Metcalf, W. W., Kelleher, N. L., Barona-Gomez, F. & Medema, M. H., Jan 2020, In: Nature Chemical Biology. 16, 1, p. 60-68 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Analysis of phytoplankton assemblage structure in the Mediterranean Sea based on high-throughput sequencing of partial 18S rRNA sequences

    Penna, A., Casabianca, S., Fernandez Guerra, Antonio, Vernesi, C. & Scardi, M., Dec 2017, In: Marine Genomics. 36, p. 49-55 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology

    Hardisty, A. R., Bacall, F., Beard, N., Balcazar-Vargas, M-P., Balech, B., Barcza, Z., Bourlat, S. J., De Giovanni, R., de Jong, Y., De Leo, F., Dobor, L., Donvito, G., Fellows, D., Fernandez Guerra, A., Ferreira, N., Fetyukova, Y., Fosso, B., Giddy, J., Goble, C., Guentsch, A. & 31 others, Haines, R., Ernst, V. H., Hettling, H., Hidy, D., Horvath, F., Ittzes, D., Ittzes, P., Jones, A., Kottmann, R., Kulawik, R., Leidenberger, S., Lyytikainen-Saarenmaa, P., Mathew, C., Morrison, N., Nenadic, A., de la Hidalga, A. N., Obst, M., Oostermeijer, G., Paymal, E., Pesole, G., Pinto, S., Poigne, A., Fernandez, F. Q., Santamaria, M., Saarenmaa, H., Sipos, G., Sylla, K., Tahtinen, M., Vicario, S., Vos, R. A. & BioVeL, B., 2016, In: BMC Ecology. 16, 16 p., 49.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir

    Yates, J. A. F., Andrades Valtuena, A., Vågene, Åshild Joanne, Cribdon, B., Velsko, I. M., Borry, M., Bravo-Lopez, M. J., Fernandez Guerra, Antonio, Green, E. J., Ramachandran, S. L., Heintzman, P. D., Spyrou, M. A., Huebner, A., Gancz, A. S., Hider, J., Allshouse, A. F., Zaro, V. & Warinner, C., 2021, In: Scientific Data. 8, 8 p., 31.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Community-led, integrated, reproducible multi-omics with anvi'o

    Eren, A. M., Kiefl, E., Shaiber, A., Veseli, I., Miller, S. E., Schechter, M. S., Fink, I., Pan, J. N., Yousef, M., Fogarty, E. C., Trigodet, F., Watson, A. R., Esen, O. C., Moore, R. M., Clayssen, Q., Lee, M. D., Kivenson, V., Graham, E. D., Merrill, B. D., Karkman, A. & 14 others, Blankenberg, D., Eppley, J. M., Sjodin, A., Scott, J. J., Vazquez-Campos, X., McKay, L. J., McDaniel, E. A., Stevens, S. L. R., Anderson, R. E., Fuessel, J., Fernandez Guerra, Antonio, Maignien, L., Delmont, T. O. & Willis, A. D., 2021, In: Nature Microbiology. 6, 1, p. 3-6 4 p.

    Research output: Contribution to journal › Editorial › Research › peer-review

  8. Comparative Genomic Analysis Reveals a Diverse Repertoire of Genes Involved in Prokaryote-Eukaryote Interactions within the Pseudovibrio Genus

    Romano, S., Fernandez Guerra, Antonio, Reen, F. J., Gloeckner, F. O., Crowley, S. P., O'Sullivan, O., Cotter, P. D., Adams, C., Dobson, A. D. W. & O'Gara, F., 2016, In: Frontiers in Microbiology. 7, 20 p., 387.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Decoding the ocean's microbiological secrets for marine enzyme biodiscovery

    Ferrer, M., Mendez-Garcia, C., Bargiela, R., Chow, J., Alonso, S., Garcia-Moyano, A., Bjerga, G. E. K., Steen, I. H., Schwabe, T., Blom, C., Vester, J., Weckbecker, A., Shahgaldian, P., de Carvalho, C. C. C. R., Meskys, R., Zanaroli, G., Gloeckner, F. O., Fernandez-Guerra, A., Thambisetty, S., de la Calle, F. & 9 others, Golyshina, O. V., Yakimov, M. M., Jaeger, K., Yakunin, A. F., Streit, W. R., McMeel, O., Calewaert, J., Tonne, N. & Golyshin, P. N., 2019, In: FEMS Microbiology Letters. 366, 1

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Determinants and Prediction of Esterase Substrate Promiscuity Patterns

    Martinez-Martinez, M., Coscolin, C., Santiago, G., Chow, J., Stogios, P. J., Bargiela, R., Gertler, C., Navarro-Fernandez, J., Bollinger, A., Thies, S., Mendez-Garcia, C., Popovic, A., Brown, G., Chernikova, T. N., Garcia-Moyano, A., Bjerga, G. E. K., Perez-Garcia, P., Hai, T., Del Pozo, M. V., Stokke, R. & 22 others, Steen, I. H., Cui, H., Xu, X., Nocek, B. P., Alcaide, M., Distaso, M., Mesa, V., Pelaez, A. I., Sanchez, J., Buchholz, P. C. F., Pleiss, J., Fernandez Guerra, Antonio, Gloeckner, F. O., Golyshina, O. V., Yakimov, M. M., Savchenko, A., Jaeger, K., Yakunin, A. F., Streit, W. R., Golyshin, P. N., Guallar, V. & Ferrer, M., Jan 2018, In: ACS chemical biology. 13, 1, p. 225-234 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Exploration of community traits as ecological markers in microbial metagenomes

    Barberán, A., Fernandez Guerra, Antonio, Bohannan, B. J. M. & Casamayor, E. O., 2012, In: Molecular Ecology. 21, 8, p. 1909-1917

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

    Delmont, T. O., Gaia, M., Hinsinger, D. D., Frémont, P., Vanni, C., Fernandez-Guerra, A., Eren, A. M., Kourlaiev, A., d'Agata, L., Clayssen, Q., Villar, E., Labadie, K., Cruaud, C., Poulain, J., Da Silva, C., Wessner, M., Noel, B., Aury, J-M., Sunagawa, S., Acinas, S. G. & 30 others, Bork, P., Karsenti, E., Bowler, C., Sardet, C., Stemmann, L., de Vargas, C., Wincker, P., Lescot, M., Babin, M., Gorsky, G., Grimsley, N., Guidi, L., Hingamp, P., Jaillon, O., Kandels, S., Iudicone, D., Ogata, H., Pesant, S., Sullivan, M. B., Not, F., Lee, K. B., Boss, E., Cochrane, G., Follows, M., Poulton, N., Raes, J., Sieracki, M., Speich, S., Pelletier, E. & Tara Oceans Coordinators, T. O. C., 2022, In: Cell Genomics. 2, 5, 17 p., 100123.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Functional repertoire convergence of distantly related eukaryotic plankton lineages revealed by genome-resolved metagenomics

    Delmont, T. O., Gaia, M., Hinsinger, D. D., Fremont, P., Vanni, C., Fernandez Guerra, A., Eren, A. M., Kourlaiev, A., d'Agata, L., Clayssen, Q., Villar, E., Labadie, K., Cruaud, C., Poulain, J., Da Silva, C., Wessner, M., Noel, B., Aury, J-M., de Vargas, C., Bowler, C. & 4 others, Karsenti, E., Pelletier, E., Wincker, P. & Jaillon, O., 23 Jan 2021, 30 p. (bioRxiv).

    Research output: Working paper › Preprint › Research

  14. Future Science Brief - Big Data in Marine Science

    Guidi, L., Fernandez Guerra, Antonio, Canchaya, C., Curry, E., Foglini, F., Irisson, J., Malde, K., Marshall, T. C., Obst, M., Ribeiro, R. P., Tjiputra, J. & Bakker, D. C. E., 2020, 52 p.

    Research output: Book/Report › Book › Research › peer-review

  15. Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria)

    Gonzalez, J. M., Fernandez-Gomez, B., Fernandez Guerra, Antonio, Gomez-Consarnau, L., Sanchez, O., Coll-Llado, M., del Campo, J., Escudero, L., Rodriguez-Martinez, R., Alonso-Sáez, L., Latasa, M., Paulsen, I., Nedashkovskaya, O., Lekunberri, I., Pinhassi, J. & Pedros-Alio, C., 2008, In: Proceedings of the National Academy of Sciences of the United States of America. 105, 25, p. 8724-8729

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Genomic adaptation of giant viruses in polar oceans

    Meng, L., Delmont, T. O., Gaïa, M., Pelletier, E., Fernandez Guerra, Antonio, Chaffron, S., Neches, R. Y., Wu, J., Kaneko, H., Endo, H. & Ogata, H., 2023, In: Nature Communications. 14, 12 p., 6233.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems

    Richter, D. J., Watteaux, R., Vannier, T., Leconte, J., Frémont, P., Reygondeau, G., Maillet, N., Henry, N., Benoit, G., Da Silva, O., Delmont, T. O., Fernàndez-Guerra, A., Suweis, S., Narci, R., Berney, C., Eveillard, D., Gavory, F., Guidi, L., Labadie, K., Mahieu, E. & 27 others, Poulain, J., Romac, S., Roux, S., Dimier, C., Kandels, S., Picheral, M., Searson, S., Pesant, S., Aury, J., Brum, J. R., Lemaitre, C., Pelletier, E., Bork, P., Sunagawa, S., Lombard, F., Karp-Boss, L., Bowler, C., Sullivan, M. B., Karsenti, E., Mariadassou, M., Probert, I., Peterlongo, P., Wincker, P., de Vargas, C., d'Alcalà, M. R., Iudicone, D. & Jaillon, O., 2022, In: eLife. 11, 30 p., e78129.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Genomics of the Proteorhodopsin-Containing Marine Flavobacterium Dokdonia sp. Strain MED134

    Gonzalez, J. M., Pinhassi, J., Fernandez-Gomez, B., Coll-Llado, M., Gonzalez-Velazquez, M., Puigbo, P., Jaenicke, S., Gomez-Consarnau, L., Fernandez Guerra, Antonio, Goesmann, A. & Pedros-Alio, C., 2011, In: Applied and Environmental Microbiology. 77, 24, p. 8676-8686

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Geographic distribution at subspecies resolution level: closely related Rhodopirellula species in European coastal sediments

    Zure, Marina, Fernandez Guerra, Antonio, Munn, C. B. & Harder, J., Feb 2017, In: ISME Journal. 11, 2, p. 478-489 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Habitat-Associated Phylogenetic Community Patterns of Microbial Ammonia Oxidizers

    Fernandez Guerra, Antonio & Casamayor, E. O., 2012, In: PLoS ONE. 7, 10, 9 p., e47330.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Inter-comparison of marine microbiome sampling protocols

    Pascoal, F., Tomasino, M. P., Piredda, R., Quero, G. M., Torgo, L., Poulain, J., Galand, P. E., Fuhrman, J. A., Mitchell, A., Tinta, T., Turk Dermastia, T., Fernandez-Guerra, A., Vezzi, A., Logares, R., Malfatti, F., Endo, H., Dąbrowska, A. M., De Pascale, F., Sánchez, P., Henry, N. & 9 others, Fosso, B., Wilson, B., Toshchakov, S., Ferrant, G. K., Grigorov, I., Vieira, F. R. J., Costa, R., Pesant, S. & Magalhães, C., 2023, In: ISME communications. 3, 16 p., 84.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Late Quaternary dynamics of Arctic biota from ancient environmental genomics: [+ Correction]

    Wang, Y., Pedersen, M. W., Alsos, I. G., De Sanctis, B., Racimo, F., Prohaska, A., Coissac, E., Owens, H. L., Merkel, M. K. F., Fernandez-Guerra, A., Rouillard, A., Lammers, Y., Alberti, A., Denoeud, F., Money, D., Ruter, A. H., McColl, H., Larsen, N. K., Cherezova, A. A., Edwards, M. E. & 30 others, Fedorov, G. B., Haile, James Seymour, Orlando, L., Vinner, Lasse, Korneliussen, Thorfinn Sand, Beilman, D. W., Bjørk, Anders Anker, Cao, Jialu, Dockter, C., Esdale, J., Gusarova, G., Kjeldsen, Kristian Kjellerup, Mangerud, J., Rasic, J. T., Skadhauge, B., Svendsen, J. I., Tikhonov, A., Wincker, P., Xing, Y., Zhang, Y., Froese, D. G., Rahbek, Carsten, Nogues, David Bravo, Holden, P. B., Edwards, N. R., Durbin, R., Meltzer, D. J., Kjær, Kurt H., Möller, P. & Willerslev, Eske, 2021, In: Nature. 600, 7887, p. 86–92 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Linking Spatial and Temporal Dynamic of Bacterioplankton Communities With Ecological Strategies Across a Coastal Frontal Area

    Lemonnier, C., Perennou, M., Eveillard, D., Fernandez Guerra, Antonio, Leynaert, A., Marie, L., Morrison, H. G., Memery, L., Paillard, C. & Maignien, L., 2020, In: Frontiers in Marine Science. 7, 13 p., 376.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Meta-SourceTracker: application of Bayesian source tracking to shotgun metagenomics

    McGhee, J. J., Rawson, N., Bailey, B. A., Fernandez Guerra, Antonio, Sisk-Hackworth, L. & Kelley, S. T., 2020, In: PeerJ. 8, 18 p., 8783.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Mining metagenomes for natural product biosynthetic gene clusters: unlocking new potential with ultrafast techniques

    Pereira-Flores, E., Medema, M., Buttigieg, P. L., Meinicke, P., Glöckner, F. O. & Fernandez Guerra, Antonio, 2021, 29 p. (bioRxiv).

    Research output: Working paper › Preprint › Research

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ID: 235125386