Antonio Fernandez Guerra

Antonio Fernandez Guerra

Assistant professor

Member of:


    1. 2021
    2. Submitted

      Unifying the known and unknown microbial coding sequence space

      Vanni, C., Schechter, M. S., Acinas, S. G., Barberán, A., Buttigieg, P. L., Casamayor, E. O., Delmont, T. O., Duarte, C. M., Eren, A. M., Finn, R. D., Kottmann, R., Mitchell, A., Sanchez, P., Siren, K., Steinegger, M., Glöckner, F. O. & Fernandez Guerra, Antonio, 18 Feb 2021, (Submitted) In: bioRxiv. 51 p.

      Research output: Contribution to journalJournal articleResearch

    3. Submitted

      Functional repertoire convergence of distantly related eukaryotic plankton lineages revealed by genome-resolved metagenomics

      Delmont, T. O., Gaia, M., Hinsinger, D. D., Fremont, P., Vanni, C., Fernandez Guerra, Antonio, Eren, A. M., Kourlaiev, A., d'Agata, L., Clayssen, Q., Villar, E., Labadie, K., Cruaud, C., Poulain, J., Da Silva, C., Wessner, M., Noel, B., Aury, J., de Vargas, C., Bowler, C., Karsenti, E., Pelletier, E., Wincker, P. & Jaillon, O., 23 Jan 2021, (Submitted) In: bioRxiv. 30 p.

      Research output: Contribution to journalJournal articleResearch

    4. Submitted

      Mining metagenomes for natural product biosynthetic gene clusters: unlocking new potential with ultrafast techniques

      Pereira-Flores, E., Medema, M., Buttigieg, P. L., Meinicke, P., Glöckner, F. O. & Fernandez Guerra, Antonio, 20 Jan 2021, (Submitted) In: bioRxiv. 29 p.

      Research output: Contribution to journalJournal articleResearch

    5. Published

      Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir

      Yates, J. A. F., Andrades Valtuena, A., Vagene, A. J., Cribdon, B., Velsko, I. M., Borry, M., Bravo-Lopez, M. J., Fernandez Guerra, Antonio, Green, E. J., Ramachandran, S. L., Heintzman, P. D., Spyrou, M. A., Huebner, A., Gancz, A. S., Hider, J., Allshouse, A. F., Zaro, V. & Warinner, C., 2021, In: Scientific Data. 8, 8 p., 31.

      Research output: Contribution to journalJournal articleResearchpeer-review

    6. Published

      Community-led, integrated, reproducible multi-omics with anvi'o

      Eren, A. M., Kiefl, E., Shaiber, A., Veseli, I., Miller, S. E., Schechter, M. S., Fink, I., Pan, J. N., Yousef, M., Fogarty, E. C., Trigodet, F., Watson, A. R., Esen, O. C., Moore, R. M., Clayssen, Q., Lee, M. D., Kivenson, V., Graham, E. D., Merrill, B. D., Karkman, A., Blankenberg, D., Eppley, J. M., Sjodin, A., Scott, J. J., Vazquez-Campos, X., McKay, L. J., McDaniel, E. A., Stevens, S. L. R., Anderson, R. E., Fuessel, J., Fernandez Guerra, Antonio, Maignien, L., Delmont, T. O. & Willis, A. D., 2021, In: Nature Microbiology. 6, 1, p. 3-6 4 p.

      Research output: Contribution to journalEditorialResearchpeer-review

    7. In preparation

      Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems

      Richter, D. J., Watteaux, R., Vannier, T., Leconte, J., Frémont, P., Reygondeau, G., Maillet, N., Henry, N., Benoit, G., Da Silva, O., Delmont, T. O., Fernandez Guerra, Antonio, Suweis, S., Narci, R., Berney, C., Eveillard, D., Gavory, F., Guidi, L., Labadie, K., Mahieu, E., Poulain, J., Romac, S., Roux, S., Dimier, C., Kandels, S., Picheral, M., Searson, S., Coordinators, T. O., Pesant, S., Aury, J., Brum, J. R., Lemaitre, C., Pelletier, E., Bork, P., Sunagawa, S., Lombard, F., Karp-Boss, L., Bowler, C., Sullivan, M. B., Karsenti, E., Mariadassou, M., Probert, I., Peterlongo, P., Wincker, P., de Vargas, C., d'Alcalà, M. R., Iudicone, D. & Jaillon, O., 2021, (In preparation) In: bioRxiv. p. 867739 1 p.

      Research output: Contribution to journalJournal articleResearch

    8. 2020
    9. Published

      A computational framework to explore large-scale biosynthetic diversity

      Navarro-Muñoz, J. C., Selem-Mojica, N., Mullowney, M. W., Kautsar, S. A., Tryon, J. H., Parkinson, E. I., De Los Santos, E. L. C., Yeong, M., Cruz-Morales, P., Abubucker, S., Roeters, A., Lokhorst, W., Fernandez Guerra, Antonio, Cappelini, L. T. D., Goering, A. W., Thomson, R. J., Metcalf, W. W., Kelleher, N. L., Barona-Gomez, F. & Medema, M. H., Jan 2020, In: Nature Chemical Biology. 16, 1, p. 60-68 9 p.

      Research output: Contribution to journalJournal articleResearchpeer-review

    10. Future Science Brief - Big Data in Marine Science

      Guidi, L., Fernandez Guerra, Antonio, Canchaya, C., Curry, E., Foglini, F., Irisson, J., Malde, K., Marshall, T. C., Obst, M., Ribeiro, R. P., Tjiputra, J. & Bakker, D. C. E., 2020, 52 p.

      Research output: Book/ReportBookResearchpeer-review

    11. Published

      Linking Spatial and Temporal Dynamic of Bacterioplankton Communities With Ecological Strategies Across a Coastal Frontal Area

      Lemonnier, C., Perennou, M., Eveillard, D., Fernandez Guerra, Antonio, Leynaert, A., Marie, L., Morrison, H. G., Memery, L., Paillard, C. & Maignien, L., 2020, In: Frontiers in Marine Science. 7, 13 p., 376.

      Research output: Contribution to journalJournal articleResearchpeer-review

    12. Published

      Meta-SourceTracker: application of Bayesian source tracking to shotgun metagenomics

      McGhee, J. J., Rawson, N., Bailey, B. A., Fernandez Guerra, Antonio, Sisk-Hackworth, L. & Kelley, S. T., 2020, In: PeerJ. 8, 18 p., 8783.

      Research output: Contribution to journalJournal articleResearchpeer-review

    13. Published

      Verrucomicrobia use hundreds of enzymes to digest the algal polysaccharide fucoidan

      Sichert, A., Corzett, C. H., Schechter, M. S., Unfried, F., Markert, S., Becher, D., Fernandez Guerra, Antonio, Liebeke, M., Schweder, T., Polz, M. F. & Hehemann, J. H., 2020, In: Nature Microbiology. 5, p. 1026-1039

      Research output: Contribution to journalJournal articleResearchpeer-review

    14. 2019
    15. Decoding the ocean's microbiological secrets for marine enzyme biodiscovery

      Ferrer, M., Mendez-Garcia, C., Bargiela, R., Chow, J., Alonso, S., Garcia-Moyano, A., Bjerga, G. E. K., Steen, I. H., Schwabe, T., Blom, C., Vester, J., Weckbecker, A., Shahgaldian, P., de Carvalho, C. C. C. R., Meskys, R., Zanaroli, G., Gloeckner, F. O., Fernandez Guerra, Antonio, Thambisetty, S., de la Calle, F., Golyshina, O. V., Yakimov, M. M., Jaeger, K., Yakunin, A. F., Streit, W. R., McMeel, O., Calewaert, J., Tonne, N. & Golyshin, P. N., 2019, In: FEMS Microbiology Letters. 366, 1

      Research output: Contribution to journalJournal articleResearchpeer-review

    16. 2018
    17. Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics

      Bergauer, K., Fernandez Guerra, Antonio, Garcia, J. A. L., Sprenger, R. R., Stepanauskas, R., Pachiadaki, M. G., Jensen, O. N. & Herndl, G. J., 16 Jan 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 3, p. E400-E408 9 p.

      Research output: Contribution to journalJournal articleResearchpeer-review

    18. Determinants and Prediction of Esterase Substrate Promiscuity Patterns

      Martinez-Martinez, M., Coscolin, C., Santiago, G., Chow, J., Stogios, P. J., Bargiela, R., Gertler, C., Navarro-Fernandez, J., Bollinger, A., Thies, S., Mendez-Garcia, C., Popovic, A., Brown, G., Chernikova, T. N., Garcia-Moyano, A., Bjerga, G. E. K., Perez-Garcia, P., Hai, T., Del Pozo, M. V., Stokke, R., Steen, I. H., Cui, H., Xu, X., Nocek, B. P., Alcaide, M., Distaso, M., Mesa, V., Pelaez, A. I., Sanchez, J., Buchholz, P. C. F., Pleiss, J., Fernandez Guerra, Antonio, Gloeckner, F. O., Golyshina, O. V., Yakimov, M. M., Savchenko, A., Jaeger, K., Yakunin, A. F., Streit, W. R., Golyshin, P. N., Guallar, V. & Ferrer, M., Jan 2018, In: ACS chemical biology. 13, 1, p. 225-234 10 p.

      Research output: Contribution to journalJournal articleResearchpeer-review

    19. Recurrent patterns of microdiversity in a temperate coastal marine environment

      Chafee, M., Fernandez Guerra, Antonio, Buttigieg, P. L., Gerdts, G., Eren, A. M., Teeling, H. & Amann, R. I., Jan 2018, In: ISME Journal. 12, 1, p. 237-252 16 p.

      Research output: Contribution to journalJournal articleResearchpeer-review

    20. Molecular recognition of the beta-glucans laminarin and pustulan by a SusD-like glycan-binding protein of a marine Bacteroidetes

      Mystkowska, A. A., Robb, C., Vidal-Melgosa, S., Vanni, C., Fernandez Guerra, Antonio, Hoehne, M. & Hehemann, J., 2018, In: FEBS Journal. 285, 23, p. 4465-4481

      Research output: Contribution to journalJournal articleResearchpeer-review

    21. 2017
    22. Analysis of phytoplankton assemblage structure in the Mediterranean Sea based on high-throughput sequencing of partial 18S rRNA sequences

      Penna, A., Casabianca, S., Fernandez Guerra, Antonio, Vernesi, C. & Scardi, M., Dec 2017, In: Marine Genomics. 36, p. 49-55 7 p.

      Research output: Contribution to journalJournal articleResearchpeer-review

    23. Geographic distribution at subspecies resolution level: closely related Rhodopirellula species in European coastal sediments

      Zure, Marina, Fernandez Guerra, Antonio, Munn, C. B. & Harder, J., Feb 2017, In: ISME Journal. 11, 2, p. 478-489 12 p.

      Research output: Contribution to journalJournal articleResearchpeer-review

    24. 2016
    25. BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology

      Hardisty, A. R., Bacall, F., Beard, N., Balcazar-Vargas, M., Balech, B., Barcza, Z., Bourlat, S. J., De Giovanni, R., de Jong, Y., De Leo, F., Dobor, L., Donvito, G., Fellows, D., Fernandez Guerra, Antonio, Ferreira, N., Fetyukova, Y., Fosso, B., Giddy, J., Goble, C., Guentsch, A., Haines, R., Ernst, V. H., Hettling, H., Hidy, D., Horvath, F., Ittzes, D., Ittzes, P., Jones, A., Kottmann, R., Kulawik, R., Leidenberger, S., Lyytikainen-Saarenmaa, P., Mathew, C., Morrison, N., Nenadic, A., de la Hidalga, A. N., Obst, M., Oostermeijer, G., Paymal, E., Pesole, G., Pinto, S., Poigne, A., Fernandez, F. Q., Santamaria, M., Saarenmaa, H., Sipos, G., Sylla, K., Tahtinen, M., Vicario, S., Vos, R. A. & BioVeL, B., 2016, In: BMC Ecology. 16, 16 p., 49.

      Research output: Contribution to journalJournal articleResearchpeer-review

    26. Comparative Genomic Analysis Reveals a Diverse Repertoire of Genes Involved in Prokaryote-Eukaryote Interactions within the Pseudovibrio Genus

      Romano, S., Fernandez Guerra, Antonio, Reen, F. J., Gloeckner, F. O., Crowley, S. P., O'Sullivan, O., Cotter, P. D., Adams, C., Dobson, A. D. W. & O'Gara, F., 2016, In: Frontiers in Microbiology. 7, 20 p., 387.

      Research output: Contribution to journalJournal articleResearchpeer-review

    27. MyOSD 2014: Evaluating Oceanographic Measurements Contributed by Citizen Scientists in Support of Ocean Sampling Day

      Schnetzer, J., Kopf, A., Bietz, M. J., Buttigieg, P. L., Fernandez Guerra, Antonio, Ristov, A. P., Gloeckner, F. O. & Kottmann, R., 2016, In: Journal of Microbiology and Biology Education. 17, 1, p. 163-171

      Research output: Contribution to journalJournal articleResearchpeer-review

    28. Optimized R functions for analysis of ecological community data using the R virtual laboratory (RvLab)

      Varsos, C., Patkos, T., Oulas, A., Pavloudi, C., Gougousis, A., Ijaz, U. Z., Filiopoulou, I., Pattakos, N., Berghe, E. V., Fernandez Guerra, Antonio, Faulwetter, S., Chatzinikolaou, E., Pafilis, E., Bekiari, C., Doerr, M. & Arvanitidis, C., 2016, In: Biodiversity Data Journal. 4, 28 p., e8357.

      Research output: Contribution to journalJournal articleResearchpeer-review

    29. 2015
    30. The ocean sampling day consortium

      Kopf, A., Bicak, M., Kottmann, R., Schnetzer, J., Kostadinov, I., Lehmann, K., Fernandez Guerra, Antonio, Jeanthon, C., Rahav, E., Ullrich, M., Wichels, A., Gerdts, G., Polymenakou, P., Kotoulas, G., Siam, R., Abdallah, R. Z., Sonnenschein, E. C., Cariou, T., O'Gara, F., Jackson, S., Orlic, S., Steinke, M., Busch, J., Duarte, B., Caçador, I., Canning-Clode, J., Bobrova, O., Marteinsson, V., Reynisson, E., Loureiro, C. M., Luna, G. M., Quero, G. M., Loescher, C. R., Kremp, A., DeLorenzo, M. E., Ovreas, L., Tolman, J., LaRoche, J., Penna, A., Frischer, M., Davis, T., Katherine, B., Meyer, C. P., Ramos, S., Magalhaes, C., Jude-Lemeilleur, F., Leopoldina Aguirre-Macedo, M., Wang, S., Poulton, N., Martin, P. & OSD, O., 2015, In: GigaScience. 4, 5 p., 27.

      Research output: Contribution to journalComment/debateResearchpeer-review

    31. 2013
    32. Pheromone Evolution, Reproductive Genes, and Comparative Transcriptomics in Mediterranean Earthworms (Annelida, Oligochaeta, Hormogastridae)

      Novo, M., Riesgo, A., Fernandez Guerra, Antonio & Giribet, G., 2013, In: Molecular Biology and Evolution. 30, 7, p. 1614-1629

      Research output: Contribution to journalJournal articleResearchpeer-review

    33. 2012
    34. Exploration of community traits as ecological markers in microbial metagenomes

      Barberán, A., Fernandez Guerra, Antonio, Bohannan, B. J. M. & Casamayor, E. O., 2012, In: Molecular Ecology. 21, 8, p. 1909-1917

      Research output: Contribution to journalJournal articleResearchpeer-review

    35. Habitat-Associated Phylogenetic Community Patterns of Microbial Ammonia Oxidizers

      Fernandez Guerra, Antonio & Casamayor, E. O., 2012, In: PLoS ONE. 7, 10, 9 p., e47330.

      Research output: Contribution to journalJournal articleResearchpeer-review

    36. Patterns and architecture of genomic islands in marine bacteria

      Fernandez-Gomez, B., Fernandez Guerra, Antonio, Casamayor, E. O., Gonzalez, J. M., Pedros-Alio, C. & Acinas, S. G., 2012, In: BMC Genomics. 13, 19 p., 347.

      Research output: Contribution to journalJournal articleResearchpeer-review

    37. 2011
    38. A close relationship between primary nucleotides sequence structure and the composition of functional genes in the genome of prokaryotes

      Garcia, J. A. L., Fernandez Guerra, Antonio & Casamayor, E. O., 2011, In: Molecular Phylogenetics and Evolution. 61, 3, p. 650-658

      Research output: Contribution to journalJournal articleResearchpeer-review

    39. Genomics of the Proteorhodopsin-Containing Marine Flavobacterium Dokdonia sp. Strain MED134

      Gonzalez, J. M., Pinhassi, J., Fernandez-Gomez, B., Coll-Llado, M., Gonzalez-Velazquez, M., Puigbo, P., Jaenicke, S., Gomez-Consarnau, L., Fernandez Guerra, Antonio, Goesmann, A. & Pedros-Alio, C., 2011, In: Applied and Environmental Microbiology. 77, 24, p. 8676-8686

      Research output: Contribution to journalJournal articleResearchpeer-review

    40. Phylogenetic ecology of widespread uncultured clades of the Kingdom Euryarchaeota

      Barberán, A., Fernandez Guerra, Antonio, Auguet, J., Galand, P. E. & Casamayor, E. O., 2011, In: Molecular Ecology. 20, 9, p. 1988-1996

      Research output: Contribution to journalJournal articleResearchpeer-review

    41. 2010
    42. T-RFPred: a nucleotide sequence size prediction tool for microbial community description based on terminal-restriction fragment length polymorphism chromatograms

      Fernandez Guerra, Antonio, Buchan, A., Mou, X., Casamayor, E. O. & Gonzalez, J. M., 2010, In: BMC Microbiology. 10, 7 p., 262.

      Research output: Contribution to journalJournal articleResearchpeer-review

    43. 2008
    44. Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria)

      Gonzalez, J. M., Fernandez-Gomez, B., Fernandez Guerra, Antonio, Gomez-Consarnau, L., Sanchez, O., Coll-Llado, M., del Campo, J., Escudero, L., Rodriguez-Martinez, R., Alonso-Sáez, L., Latasa, M., Paulsen, I., Nedashkovskaya, O., Lekunberri, I., Pinhassi, J. & Pedros-Alio, C., 2008, In: Proceedings of the National Academy of Sciences of the United States of America. 105, 25, p. 8724-8729

      Research output: Contribution to journalJournal articleResearchpeer-review

    45. 2006
    46. The Genome of the Sea Urchin Strongylocentrotus purpuratus

      Sodergren, E., Weinstock, G. M., Davidson, E. H., Cameron, R. A., Gibbs, R. A., Angerer, R. C., Angerer, L. M., Arnone, M. I., Burgess, D. R., Burke, R. D., Cameron, R. A., Coffman, J. A., Davidson, E. H., Dean, M., Elphick, M. R., Ettensohn, C. A., Foltz, K. R., Hamdoun, A., Hynes, R. O., Klein, W. H., Marzluff, W., McClay, D. R., Morris, R. L., Mushegian, A., Rast, J. P., Sodergren, E., Smith, L. C., Thorndyke, M. C., Vacquier, V. D., Weinstock, G. M., Wessel, G. M., Wray, G., Zhang, L., Sodergren, E., Weinstock, G. M., Angerer, R. C., Angerer, L. M., Cameron, R. A., Davidson, E. H., Elsik, C. G., Ermolaeva, O., Hlavina, W., Hofmann, G., Kitts, P., Fernandez Guerra, Antonio, Wang, D., Rizzo, F. & Sea Urchin, S. U., 2006, In: Science. 314, 5801, p. 941-952

      Research output: Contribution to journalJournal articleResearchpeer-review

    47. The genomic repertoire for cell cycle control and DNA metabolism in S. purpuratus

      Fernandez Guerra, Antonio, Aze, A., Morales, J., Mulner-Lorillon, O., Cosson, B., Cormier, P., Bradham, C., Adams, N., Robertson, A. J., Marzluff, W. F., Coffman, J. A. & Geneviere, A., 2006, In: Developmental Biology. 300, 1, p. 238-251

      Research output: Contribution to journalReviewResearchpeer-review

    ID: 235125386