Filipe Jorge Garrett Vieira

Filipe Jorge Garrett Vieira

Research Consultant

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    ORCID: 0000-0002-8464-7770

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    1. Published

      Estimating IBD tracts from low coverage NGS data

      Vieira, Filipe Garrett, Albrechtsen, Anders & Nielsen, Rasmus, 2016, In: Bioinformatics. 32, 14, p. 2096-2102 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    2. Published

      Estimating inbreeding coefficients from NGS data: impact on genotype calling and allele frequency estimation

      Vieira, Filipe Garrett, Fumagalli, M., Albrechtsen, Anders & Nielsen, Rasmus, 2013, In: Genome Research. 23, p. 1852-1861 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium

      Clark, A. G., Eisen, M. B., Smith, D. R., Bergman, C. M., Oliver, B., Markow, T. A., Kaufman, T. C., Kellis, M., Gelbart, W., Iyer, V. N., Pollard, D. A., Sackton, T. B., Larracuente, A. M., Singh, N. D., Abad, J. P., Abt, D. N., Adryan, B., Aguade, M., Akashi, H., Anderson, W. W. & 31 others, Aquadro, C. F., Ardell, D. H., Arguello, R., Artieri, C. G., Barbash, D. A., Barker, D., Barsanti, P., Batterham, P., Batzoglou, S., Begun, D., Bhutkar, A., Blanco, E., Bosak, S. A., Bradley, R. K., Brand, A. D., Brent, M. R., Brooks, A. N., Brown, R. H., Butlin, R. K., Caggese, C., Calvi, B. R., Bernardo de Carvalho, A., Caspi, A., Castrezana, S., Celniker, S. E., Chang, J. L., Garcia, A. C. L., Nielsen, Rasmus, Pedersen, Jakob Skou, Vieira, Filipe Garrett & Drosophila 12 Genomes Consortium, D. 1. G. C., 2007, In: Nature. 450, 7167, p. 203-18 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      Evolutionary genomics and conservation of the endangered Przewalski's horse

      Der Sarkissian, C., Ermini, L., Schubert, M., Yang, M. A., Sanz, P. L., Fumagalli, M., Jónsson, H., Bar-Gal, G. K., Albrechtsen, A., Garrett Vieira, F. J., Petersen, B., Ginolhac, A., Seguin-Orlando, A., Magnussen, K., Fages, A. A., Gamba, C., Lorente-Galdos, B., Polani, S., Steiner, C., Neuditschko, M. & 17 others, Jagannathan, V., Feh, C., Greenblatt, C. L., Ludwig, A., Abramson, N. I., Zimmermann, W., Schafberg, R., Tikhonov, A., Sicheritz-Ponten, T., Willerslev, Eske, Marques-Bonet, T., Ryder, O. A., McCue, M., Rieder, S., Leeb, T., Slatkin, M. & Orlando, L. A. A., 2015, In: Current Biology. 25, 19, p. 2577-2583 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Genome annotation and comparative analyses of the odorant-binding proteins and chemosensory proteins in the pea aphid Acyrthosiphon pisum

      Zhou, J. J., Vieira, Filipe Garrett, He, X. L., Smadja, C., Liu, R., Rozas, J. & Field, L. M., Mar 2010, In: Insect Molecular Biology. 19, SUPPL. 2, p. 113-122 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Genome sequence of the pea aphid Acyrthosiphon pisum

      Richards, S., Gibbs, R. A., Gerardo, N. M., Moran, N., Nakabachi, A., Stern, D., Tagu, D., Wilson, A. C. C., Muzny, D., Kovar, C., Cree, A., Chacko, J., Chandrabose, M. N., Dao, M. D., Dinh, H. H., Gabisi, R. A., Hines, S., Hume, J., Jhangian, S. N., Joshi, V. & 200 others, Lewis, L. R., Liu, Y. S., Lopez, J., Morgan, M. B., Nguyen, N. B., Okwuonu, G. O., Ruiz, S. J., Santibanez, J., Wright, R. A., Fowler, G. R., Hitchens, M. E., Lozado, R. J., Moen, C., Steffen, D., Warren, J. T., Zhang, J., Nazareth, L. V., Chavez, D., Davis, C., Lee, S. L., Patel, B. M., Pu, L. L., Bell, S. N., Johnson, A. J., Vattathil, S., Williams, R. L., Shigenobu, S., Dang, P. M., Morioka, M., Fukatsu, T., Kudo, T., Miyagishima, S. Y., Jiang, H., Worley, K. C., Legeai, F., Gauthier, J. P., Collin, O., Zhang, L., Chen, H. C., Ermolaeva, O., Hlavina, W., Kapustin, Y., Kiryutin, B., Kitts, P., Maglott, D., Murphy, T., Pruitt, K., Sapojnikov, V., Souvorov, A., Thibaud-Nissen, F., Câmara, F., Guigó, R., Stanke, M., Solovyev, V., Kosarev, P., Gilbert, D., Gabaldón, T., Huerta-Cepas, J., Marcet-Houben, M., Pignatelli, M., Moya, A., Rispe, C., Ollivier, M., Quesneville, H., Permal, E., Llorens, C., Futami, R., Hedges, D., Robertson, H. M., Alioto, T., Mariotti, M., Nikoh, N., McCutcheon, J. P., Burke, G., Kamins, A., Latorre, A., Ashton, P., Calevro, F., Charles, H., Colella, S., Douglas, A. E., Jander, G., Jones, D. H., Febvay, G., Kamphuis, L. G., Kushlan, P. F., Macdonald, S., Ramsey, J., Schwartz, J., Seah, S., Thomas, G., Vellozo, A., Cass, B., Degnan, P., Hurwitz, B., Leonardo, T., Koga, R., Altincicek, B., Anselme, C., Atamian, H., Barribeau, S. M., De Vos, M., Duncan, E. J., Evans, J., Ghanim, M., Heddi, A., Kaloshian, I., Vincent-Monegat, C., Parker, B. J., Pérez-Brocal, V., Rahbé, Y., Spragg, C. J., Tamames, J., Tamarit, D., Tamborindeguy, C., Vilcinskas, A., Bickel, R. D., Brisson, J. A., Butts, T., Chang, C. C., Christiaens, O., Davis, G. K., Duncan, E., Ferrier, D., Iga, M., Janssen, R., Lu, H. L., McGregor, A., Miura, T., Smagghe, G., Smith, J., Van Der Zee, M., Velarde, R., Wilson, M., Dearden, P., Edwards, O. R., Gordon, K., Hilgarth, R. S., Rider, S. D., Srinivasan, D., Walsh, T. K., Ishikawa, A., Jaubert-Possamai, S., Fenton, B., Huang, W., Rizk, G., Lavenier, D., Nicolas, J., Smadja, C., Zhou, J. J., Vieira, Filipe Garrett, He, X. L., Liu, R., Rozas, J., Field, L. M., Campbell, P., Carolan, J. C., Fitzroy, C. I. J., Reardon, K. T., Reeck, G. R., Singh, K., Wilkinson, T. L., Huybrechts, J., Abdel-Latief, M., Robichon, A., Veenstra, J. A., Hauser, Frank, Cazzamali, G., Schneider, M., Williamson, M., Stafflinger, E., Hansen, K. K., Grimmelikhuijzen, C. J. P., Price, D. R. G., Caillaud, M., Van Fleet, E., Ren, Q., Gatehouse, J. A., Brault, V., Monsion, B., Diaz, J., Hunnicutt, L., Ju, H. J., Pechuan, X., Aguilar, J., Cortés, T., Ortiz-Rivas, B., Martínez-Torres, D., Dombrovsky, A., Dale, R. P., Davies, T. G. E., Williamson, M. S., Jones, A., Sattelle, D., Williamson, S., Wolstenholme, A., Cottret, L., Sagot, M. F., Heckel, D. G. & Hunter, W., 2010, In: PLoS Biology. 8, 2, e1000313.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

      Kirkness, E. F., Haas, B. J., Sun, W., Braig, H. R., Perotti, M. A., Clark, J. M., Lee, S. H., Robertson, H. M., Kennedy, R. C., Elhaik, E., Gerlach, D., Kriventseva, E. V., Elsik, C. G., Graur, D., Hill, C. A., Veenstra, J. A., Walenz, B., Tubío, J. M. C., Ribeiro, J. M. C., Rozas, J. & 51 others, Johnston, J. S., Reese, J. T., Popadic, A., Tojo, M., Raoult, D., Reed, D. L., Tomoyasu, Y., Krause, E., Mittapalli, O., Margam, V. M., Li, H. M., Meyer, J. M., Johnson, R. M., Romero-Severson, J., VanZee, J. P., Alvarez-Ponce, D., Vieira, Filipe Garrett, Aguadé, M., Guirao-Rico, S., Anzola, J. M., Yoon, K. S., Strycharz, J. P., Unger, M. F., Christley, S., Lobo, N. F., Seufferheld, M. J., Wang, N. K., Dasch, G. A., Struchiner, C. J., Madey, G., Hannick, L. I., Bidwell, S., Joardar, V., Caler, E., Shao, R., Barker, S. C., Cameron, S., Bruggner, R. V., Regier, A., Johnson, J., Viswanathan, L., Utterback, T. R., Sutton, G. G., Lawson, D., Waterhouse, R. M., Venter, J. C., Strausberg, R. L., Berenbaum, M. R., Collins, F. H., Zdobnov, E. M. & Pittendrigh, B. R., 6 Jul 2010, In: Proceedings of the National Academy of Sciences of the United States of America. 107, 27, p. 12168-12173 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      Genome-culture coevolution promotes rapid divergence of killer whale ecotypes

      Foote, A. D., Vijay, N., Avila Arcos, M. D. C., Baird, R. W., Durban, J. W., Fumagalli, M., Gibbs, R. A., Hanson, M. B., Korneliussen, Thorfinn Sand, Martin, M. D., Robertson, K. M., Sousa, V. C., Vieira, Filipe Garrett, Vinař, T., Wade, P., Worley, K. C., Excoffier, L., Morin, P. A., Gilbert, M Thomas P & Wolf, J. B. W., May 2016, In: Nature Communications. 7, 12 p., 11693.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens

      Barnett, R., Westbury, M. V., Sandoval-Velasco, M., Vieira, F. G., Jeon, S., Zazula, G., Martin, M. D., Ho, S. Y. W., Mather, N., Gopalakrishnan, S., Ramos-Madrigal, J., de Manuel, M., Zepeda-Mendoza, M. L., Antunes, A., Baez, A. C., De Cahsan, B., Larson, G., O’Brien, S. J., Eizirik, E., Johnson, W. E. & 11 others, Koepfli, K., Wilting, A., Fickel, J., Dalén, L., Lorenzen, Eline, Marques-Bonet, T., Hansen, Anders Johannes, KU, thw266, Bhak, J., Yamaguchi, N. & Gilbert, M Thomas P, 2020, In: Current Biology. 30, p. 5018-5025

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      Genomic alterations in human papillomavirus-positive and -negative conjunctival squamous cell carcinomas

      Ramberg, Ingvild Margrethe Sellæg, Vieira, Filipe Garrett, Toft, Peter Bjerre, von Buchwald, Christian, Funding, M., Nielsen, Finn Cilius & Heegaard, Steffen, 2021, In: Investigative Ophthalmology and Visual Science. 62, 14, 11.

      Research output: Contribution to journal › Journal article › Research › peer-review

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    ID: 105377460