Filipe Jorge Garrett Vieira

Filipe Jorge Garrett Vieira

Research Consultant

Member of:

    ORCID: 0000-0002-8464-7770

    Publication year:
    All
    1 - 25 out of 64Page size: 25
    1. 2007
    2. Published

      Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium

      Clark, A. G., Eisen, M. B., Smith, D. R., Bergman, C. M., Oliver, B., Markow, T. A., Kaufman, T. C., Kellis, M., Gelbart, W., Iyer, V. N., Pollard, D. A., Sackton, T. B., Larracuente, A. M., Singh, N. D., Abad, J. P., Abt, D. N., Adryan, B., Aguade, M., Akashi, H., Anderson, W. W. & 31 others, Aquadro, C. F., Ardell, D. H., Arguello, R., Artieri, C. G., Barbash, D. A., Barker, D., Barsanti, P., Batterham, P., Batzoglou, S., Begun, D., Bhutkar, A., Blanco, E., Bosak, S. A., Bradley, R. K., Brand, A. D., Brent, M. R., Brooks, A. N., Brown, R. H., Butlin, R. K., Caggese, C., Calvi, B. R., Bernardo de Carvalho, A., Caspi, A., Castrezana, S., Celniker, S. E., Chang, J. L., Garcia, A. C. L., Nielsen, Rasmus, Pedersen, Jakob Skou, Vieira, Filipe Garrett & Drosophila 12 Genomes Consortium, D. 1. G. C., 2007, In: Nature. 450, 7167, p. 203-18 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: Purifying selection and birth-and-death evolution

      Vieira, Filipe Garrett, Sánchez-Gracia, A. & Rozas, J., 8 Nov 2007, In: Genome Biology (Online). 8, 11, R235.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. 2008

    5. Processing of a membrane protein required for cell-to-cell signaling during endospore formation in Bacillus subtilis

      Serrano, M., Vieira, Filipe Garrett, Moran, C. P. & Henriques, A. O., Dec 2008, In: Journal of Bacteriology. 190, 23, p. 7786-7796 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. 2009

    7. Molecular evolution of the major chemosensory gene families in insects

      Sánchez-Gracia, A., Vieira, Filipe Garrett & Rozas, J., Sep 2009, In: Heredity. 103, 3, p. 208-216 9 p.

      Research output: Contribution to journal › Review › Research › peer-review

    8. 2010

    9. Genome sequence of the pea aphid Acyrthosiphon pisum

      Richards, S., Gibbs, R. A., Gerardo, N. M., Moran, N., Nakabachi, A., Stern, D., Tagu, D., Wilson, A. C. C., Muzny, D., Kovar, C., Cree, A., Chacko, J., Chandrabose, M. N., Dao, M. D., Dinh, H. H., Gabisi, R. A., Hines, S., Hume, J., Jhangian, S. N., Joshi, V. & 200 others, Lewis, L. R., Liu, Y. S., Lopez, J., Morgan, M. B., Nguyen, N. B., Okwuonu, G. O., Ruiz, S. J., Santibanez, J., Wright, R. A., Fowler, G. R., Hitchens, M. E., Lozado, R. J., Moen, C., Steffen, D., Warren, J. T., Zhang, J., Nazareth, L. V., Chavez, D., Davis, C., Lee, S. L., Patel, B. M., Pu, L. L., Bell, S. N., Johnson, A. J., Vattathil, S., Williams, R. L., Shigenobu, S., Dang, P. M., Morioka, M., Fukatsu, T., Kudo, T., Miyagishima, S. Y., Jiang, H., Worley, K. C., Legeai, F., Gauthier, J. P., Collin, O., Zhang, L., Chen, H. C., Ermolaeva, O., Hlavina, W., Kapustin, Y., Kiryutin, B., Kitts, P., Maglott, D., Murphy, T., Pruitt, K., Sapojnikov, V., Souvorov, A., Thibaud-Nissen, F., Câmara, F., Guigó, R., Stanke, M., Solovyev, V., Kosarev, P., Gilbert, D., Gabaldón, T., Huerta-Cepas, J., Marcet-Houben, M., Pignatelli, M., Moya, A., Rispe, C., Ollivier, M., Quesneville, H., Permal, E., Llorens, C., Futami, R., Hedges, D., Robertson, H. M., Alioto, T., Mariotti, M., Nikoh, N., McCutcheon, J. P., Burke, G., Kamins, A., Latorre, A., Ashton, P., Calevro, F., Charles, H., Colella, S., Douglas, A. E., Jander, G., Jones, D. H., Febvay, G., Kamphuis, L. G., Kushlan, P. F., Macdonald, S., Ramsey, J., Schwartz, J., Seah, S., Thomas, G., Vellozo, A., Cass, B., Degnan, P., Hurwitz, B., Leonardo, T., Koga, R., Altincicek, B., Anselme, C., Atamian, H., Barribeau, S. M., De Vos, M., Duncan, E. J., Evans, J., Ghanim, M., Heddi, A., Kaloshian, I., Vincent-Monegat, C., Parker, B. J., Pérez-Brocal, V., Rahbé, Y., Spragg, C. J., Tamames, J., Tamarit, D., Tamborindeguy, C., Vilcinskas, A., Bickel, R. D., Brisson, J. A., Butts, T., Chang, C. C., Christiaens, O., Davis, G. K., Duncan, E., Ferrier, D., Iga, M., Janssen, R., Lu, H. L., McGregor, A., Miura, T., Smagghe, G., Smith, J., Van Der Zee, M., Velarde, R., Wilson, M., Dearden, P., Edwards, O. R., Gordon, K., Hilgarth, R. S., Rider, S. D., Srinivasan, D., Walsh, T. K., Ishikawa, A., Jaubert-Possamai, S., Fenton, B., Huang, W., Rizk, G., Lavenier, D., Nicolas, J., Smadja, C., Zhou, J. J., Vieira, Filipe Garrett, He, X. L., Liu, R., Rozas, J., Field, L. M., Campbell, P., Carolan, J. C., Fitzroy, C. I. J., Reardon, K. T., Reeck, G. R., Singh, K., Wilkinson, T. L., Huybrechts, J., Abdel-Latief, M., Robichon, A., Veenstra, J. A., Hauser, Frank, Cazzamali, G., Schneider, M., Williamson, M., Stafflinger, E., Hansen, K. K., Grimmelikhuijzen, C. J. P., Price, D. R. G., Caillaud, M., Van Fleet, E., Ren, Q., Gatehouse, J. A., Brault, V., Monsion, B., Diaz, J., Hunnicutt, L., Ju, H. J., Pechuan, X., Aguilar, J., Cortés, T., Ortiz-Rivas, B., Martínez-Torres, D., Dombrovsky, A., Dale, R. P., Davies, T. G. E., Williamson, M. S., Jones, A., Sattelle, D., Williamson, S., Wolstenholme, A., Cottret, L., Sagot, M. F., Heckel, D. G. & Hunter, W., 2010, In: PLoS Biology. 8, 2, e1000313.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Genome annotation and comparative analyses of the odorant-binding proteins and chemosensory proteins in the pea aphid Acyrthosiphon pisum

      Zhou, J. J., Vieira, Filipe Garrett, He, X. L., Smadja, C., Liu, R., Rozas, J. & Field, L. M., Mar 2010, In: Insect Molecular Biology. 19, SUPPL. 2, p. 113-122 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

      Kirkness, E. F., Haas, B. J., Sun, W., Braig, H. R., Perotti, M. A., Clark, J. M., Lee, S. H., Robertson, H. M., Kennedy, R. C., Elhaik, E., Gerlach, D., Kriventseva, E. V., Elsik, C. G., Graur, D., Hill, C. A., Veenstra, J. A., Walenz, B., Tubío, J. M. C., Ribeiro, J. M. C., Rozas, J. & 51 others, Johnston, J. S., Reese, J. T., Popadic, A., Tojo, M., Raoult, D., Reed, D. L., Tomoyasu, Y., Krause, E., Mittapalli, O., Margam, V. M., Li, H. M., Meyer, J. M., Johnson, R. M., Romero-Severson, J., VanZee, J. P., Alvarez-Ponce, D., Vieira, Filipe Garrett, Aguadé, M., Guirao-Rico, S., Anzola, J. M., Yoon, K. S., Strycharz, J. P., Unger, M. F., Christley, S., Lobo, N. F., Seufferheld, M. J., Wang, N. K., Dasch, G. A., Struchiner, C. J., Madey, G., Hannick, L. I., Bidwell, S., Joardar, V., Caler, E., Shao, R., Barker, S. C., Cameron, S., Bruggner, R. V., Regier, A., Johnson, J., Viswanathan, L., Utterback, T. R., Sutton, G. G., Lawson, D., Waterhouse, R. M., Venter, J. C., Strausberg, R. L., Berenbaum, M. R., Collins, F. H., Zdobnov, E. M. & Pittendrigh, B. R., 6 Jul 2010, In: Proceedings of the National Academy of Sciences of the United States of America. 107, 27, p. 12168-12173 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. 2011

    13. Comparative Genomics of the Major Chemosensory Gene Families in Arthropods

      Sánchez-Gracia, A., Vieira, Filipe Garrett, Almeida, F. C. & Rozas, J., 2011, Encyclopedia of Life Sciences. Wiley

      Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

    14. Comparative genomics of the odorant-binding and chemosensory protein gene families across the arthropoda: Origin and evolutionary history of the chemosensory system

      Vieira, Filipe Garrett & Rozas, J., 2011, In: Genome Biology and Evolution. 3, 1, p. 476-490 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. 2012

    16. BadiRate: Estimating family turnover rates by likelihood-based methods

      Librado, P., Vieira, Filipe Garrett & Rozas, J., Jan 2012, In: Bioinformatics. 28, 2, p. 279-281 3 p., btr623.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Unique features of odorant-binding proteins of the parasitoid wasp Nasonia vitripennis revealed by genome annotation and comparative analyses

      Vieira, Filipe Garrett, Forêt, S., He, X., Rozas, J., Field, L. M. & Zhou, J. J., 27 Aug 2012, In: PLoS ONE. 7, 8, e43034.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. 2013
    19. Published

      Estimating inbreeding coefficients from NGS data: impact on genotype calling and allele frequency estimation

      Vieira, Filipe Garrett, Fumagalli, M., Albrechtsen, Anders & Nielsen, Rasmus, 2013, In: Genome Research. 23, p. 1852-1861 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      Quantifying population genetic differentiation from next-generation sequencing data

      Fumagalli, M., Vieira, Filipe Garrett, Korneliussen, Thorfinn Sand, Linderoth, T., Huerta-Sánchez, E., Albrechtsen, Anders & Nielsen, Rasmus, Nov 2013, In: Genetics. 195, 3, p. 979-992 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. 2014
    22. Published

      ngsTools : methods for population genetics analyses from next-generation sequencing data

      Fumagalli, M., Vieira, Filipe Garrett, Linderoth, T. & Nielsen, Rasmus, 2014, In: Bioinformatics. 30, 10, p. 1486-1487 2 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Mycobacterial phylogenomics: an enhanced method for gene turnover analysis reveals uneven levels of gene gain and loss among species and gene families

      Librado, P., Vieira, Filipe Garrett, Sánchez-Gracia, A., Kolokotronis, S. O. & Rozas, J., Jun 2014, In: Genome Biology and Evolution. 6, 6, p. 1454-1465 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. 2015
    25. Published

      Evolutionary genomics and conservation of the endangered Przewalski's horse

      Der Sarkissian, C., Ermini, L., Schubert, M., Yang, M. A., Sanz, P. L., Fumagalli, M., Jónsson, H., Bar-Gal, G. K., Albrechtsen, A., Garrett Vieira, F. J., Petersen, B., Ginolhac, A., Seguin-Orlando, A., Magnussen, K., Fages, A. A., Gamba, C., Lorente-Galdos, B., Polani, S., Steiner, C., Neuditschko, M. & 17 others, Jagannathan, V., Feh, C., Greenblatt, C. L., Ludwig, A., Abramson, N. I., Zimmermann, W., Schafberg, R., Tikhonov, A., Sicheritz-Ponten, T., Willerslev, Eske, Marques-Bonet, T., Ryder, O. A., McCue, M., Rieder, S., Leeb, T., Slatkin, M. & Orlando, L. A. A., 2015, In: Current Biology. 25, 19, p. 2577-2583 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. Published

      The origin and evolution of maize in the Southwestern United States: [+ erratum]

      Rodrigues da Fonseca, Rute Andreia, Smith, B. D., Wales, N., Cappellini, Enrico, Skoglund, P., Fumagalli, M., Samaniego Castruita, J. A., Carøe, C., Avila Arcos, M. D. C., Hufnagel, D. E., Korneliussen, Thorfinn Sand, Vieira, Filipe Garrett, Jakobsson, M., Arriaza, B., Willerslev, Eske, Nielsen, Rasmus, Hufford, M. B., Albrechtsen, Anders, Ross-Ibarra, J. & Gilbert, M Thomas P, 2015, In: Nature Plants. 1, 5 p., 14003.

      Research output: Contribution to journal › Letter › Research › peer-review

    27. 2016
    28. Published

      Estimating IBD tracts from low coverage NGS data

      Vieira, Filipe Garrett, Albrechtsen, Anders & Nielsen, Rasmus, 2016, In: Bioinformatics. 32, 14, p. 2096-2102 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    29. Published

      Genomic characterization of a South American Phytophthora hybrid mandates reassessment of the geographic origins of Phytophthora infestans

      Martin, M. D., Vieira, Filipe Garrett, Ho, S. Y. W., Wales, N., Schubert, Mikkel, Seguin-Orlando, A., Ristaino, J. B. & Gilbert, M Thomas P, 2016, In: Molecular Biology and Evolution. 33, 2, p. 478-491 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    30. Published

      Genomic insights into the Ixodes scapularis tick vector of Lyme disease

      Gulia-Nuss, M., Nuss, A. B., Meyer, J. M., Sonenshine, D. E., Roe, R. M., Waterhouse, R. M., Sattelle, D. B., de la Fuente, J., Ribeiro, J. M., Megy, K., Thimmapuram, J., Miller, J. R., Walenz, B. P., Koren, S., Hostetler, J. B., Thiagarajan, M., Joardar, V. S., Hannick, L. I., Bidwell, S., Hammond, M. P. & 73 others, Young, S., Zeng, Q., Abrudan, J. L., Almeida, F. C., Ayllón, N., Bhide, K., Bissinger, B. W., Bonzon-Kulichenko, E., Buckingham, S. D., Caffrey, D. R., Caimano, M. J., Croset, V., Driscoll, T., Gilbert, D., Gillespie, J. J., Giraldo-Calderón, G. I., Grabowski, J. M., Jiang, D., Khalil, S. M. S., Kim, D., Kocan, K. M., Koči, J., Kuhn, R. J., Kurtti, T. J., Lees, K., Lang, E. G., Kennedy, R. C., Kwon, H., Perera, R., Qi, Y., Radolf, J. D., Sakamoto, J. M., Sánchez-Gracia, A., Severo, M. S., Silverman, N., Šimo, L., Tojo, M., Tornador, C., Van Zee, J. P., Vázquez, J., Vieira, Filipe Garrett, Villar, M., Wespiser, A. R., Yang, Y., Zhu, J., Arensburger, P., Pietrantonio, P. V., Barker, S. C., Shao, R., Zdobnov, E. M., Hauser, Frank, Grimmelikhuijzen, Cornelis (Cok), Park, Y., Rozas, J., Benton, R., Pedra, J. H. F., Nelson, D. R., Unger, M. F., Tubio, J. M. C., Tu, Z., Robertson, H. M., Shumway, M., Sutton, G., Wortman, J. R., Lawson, D., Wikel, S. K., Nene, V. M., Fraser, C. M., Collins, F. H., Birren, B., Nelson, K. E., Caler, E. & Hill, C. A., 2016, In: Nature Communications. 7, 13 p., 10507.

      Research output: Contribution to journal › Journal article › Research › peer-review

    31. Published

      Genomic population structure of freshwater-resident and anadromous ide (Leuciscus idus) in north-western Europe

      Skovrind, Mikkel, Olsen, Morten Tange, Vieira, Filipe Garrett, Antunes Pacheco, George, Carl, Henrik, Gilbert, M Thomas P & Møller, Peter Rask, 2016, In: Ecology and Evolution. 6, 4, p. 1064-1074 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    32. Published

      Improving the estimation of genetic distances from Next-Generation Sequencing data

      Vieira, Filipe Garrett, Lassalle, F., Korneliussen, Thorfinn Sand & Fumagalli, M., 2016, In: Biological Journal of the Linnean Society. 117, 1, p. 139-149 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    33. Published

      Genome-culture coevolution promotes rapid divergence of killer whale ecotypes

      Foote, A. D., Vijay, N., Avila Arcos, M. D. C., Baird, R. W., Durban, J. W., Fumagalli, M., Gibbs, R. A., Hanson, M. B., Korneliussen, Thorfinn Sand, Martin, M. D., Robertson, K. M., Sousa, V. C., Vieira, Filipe Garrett, Vinař, T., Wade, P., Worley, K. C., Excoffier, L., Morin, P. A., Gilbert, M Thomas P & Wolf, J. B. W., May 2016, In: Nature Communications. 7, 12 p., 11693.

      Research output: Contribution to journal › Journal article › Research › peer-review

    34. Published

      The power of inbreeding: NGS-based GWAS of rice reveals convergent evolution during rice domestication

      Wang, H., Xu, X., Vieira, Filipe Garrett, Xiao, Y., Li, Z., Wang, J., Nielsen, Rasmus & Chu, C., 6 Jul 2016, In: Molecular Plant. 9, 7, p. 975-985 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    35. 2017
    36. Published

      Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes

      Sanchez Barreiro, F., Vieira, Filipe Garrett, Martin, M. D., Haile, James Seymour, Gilbert, M Thomas P & Wales, N., 2017, In: Molecular Ecology Resources. 17, 2, p. 209-220 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    Previous 1 2 3 Next

    ID: 105377460