Filipe Jorge Garrett Vieira
Research Consultant
- 2019
- Published
ngsLD: evaluating linkage disequilibrium using genotype likelihoods
Fox, E. A., Wright, A. E., Fumagalli, M. & Vieira, Filipe Garrett, 1 Oct 2019, In: Bioinformatics (Oxford, England). 35, 19, p. 3855-3856 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
Parallel adaptation of rabbit populations to myxoma virus
Alves, J. M., Carneiro, M., Cheng, J. Y., Matos, A. L. D., Rahman, M. M., Loog, L., Campos, P. F., Wales, N., Eriksson, A., Manica, A., Strive, T., Graham, S. C., Afonso, S., Bell, D. J., Belmont, L., Day, J. P., Fuller, S. J., Marchandeau, S., Palmer, W. J., Queney, G. & 8 others, , 2019, In: Science. 363, 6433Research output: Contribution to journal › Journal article › Research › peer-review
- 2018
- Published
Ancient DNA analysis of Scandinavian medieval drinking horns and the horn of the last aurochs bull
Bro-Jørgensen, M. H., Carøe, C., Vieira, Filipe Garrett, Nestor, S., Hallström, A., Gregersen, K. M., Etting, V., Gilbert, M Thomas P & Sinding, Mikkel Holger Strander, 1 Nov 2018, In: Journal of Archaeological Science. 99, p. 47-54 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Male-biased gene expression resolves sexual conflict through the evolution of sex-specific genetic architecture
Wright, A. E., Fumagalli, M., Cooney, C. R., Bloch, N. I., Vieira, Filipe Garrett, Buechel, S. D., Kolm, N. & Mank, J. E., Apr 2018, In: Evolution Letters. 2, 2, p. 52-61 10 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines
Hernandez, Y., Bernstein, R., Pagan, P., Vargas, L., McCaig, W., Ramrattan, G., Akther, S., Larracuente, A., Di, L., Vieira, Filipe Garrett & Qiu, W., 2 Mar 2018, In: B M C Bioinformatics. 19, 7 p., 76.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq
Kodama, M., Brinch-pedersen, H., Sharma, S., Holme, I. B., Joernsgaard, B., Dzhanfezova, T., Amby, Daniel Buchvaldt, Vieira, Filipe Garrett, Liu, Shanlin & Gilbert, M. T. P., 2018, In: BMC Genomics. 19, 13 p., 811.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interspecific Gene Flow Shaped the Evolution of the Genus Canis
Gopalakrishnan, S., Sinding, M. H. S., Ramos-Madrigal, J., Niemann, J., Samaniego Castruita, J. A., Vieira, F. G., Carøe, C., Montero, M. D. M., Kuderna, L., Serres, A., González-Basallote, V. M., Liu, Y. H., Wang, G. D., Marques-Bonet, T., Mirarab, S., Fernandes, C., Gaubert, P., Koepfli, K. P., Budd, J., Rueness, E. K. & 7 others, , 2018, In: Current Biology. 28, 21, p. 3441-3449Research output: Contribution to journal › Journal article › Research › peer-review
- Published
No longer locally extinct? Tracing the origins of a lion (Panthera leo) living in Gabon
Barnett, R., Sinding, M. S., Vieira, Filipe Garrett, Mendoza, M. L. Z., Bonnet, M., Araldi, A., Kienast, I., Zambarda, A., Yamaguchi, N., Henschel, P. & Gilbert, M Thomas P, 2018, In: Conservation Genetics. 19, 3, p. 611-618 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Population genomics of grey wolves and wolf-like canids in North America
Sinding, Mikkel Holger Strander, Gopalakrishan, S., Vieira, Filipe Garrett, Samaniego Castruita, J. A., Raundrup, K., Heide-Jørgensen, M. P., Meldgaard, Morten, Petersen, Bent, Sicheritz-Ponten, T., Mikkelsen, J. B., Marquard-Petersen, U., Dietz, R., Sonne, C., Dalén, L., Bachmann, L., Wiig, Ø., Hansen, Anders Johannes & Gilbert, M Thomas P, 2018, In: PLOS Genetics. 14, 11, 23 p., e1007745.Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
- Published
Genomic and proteomic identification of Late Holocene remains: setting baselines for Black Sea odontocetes
Biard, V., Gol'din, P., Gladilina, E., Vishnyakova, K., McGrath, K., Vieira, Filipe Garrett, Wales, N., Fontaine, M. C., Speller, C. & Olsen, Morten Tange, Oct 2017, In: Journal of Archaeological Science: Reports. 15, p. 262-271 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Unmatched DNA preservation prove arctic hare and sheep wool in Norse Greenlandic textile from “The Farm Beneath the Sand”
Sinding, Mikkel Holger Strander, Vieira, Filipe Garrett & Smith, M. H., 1 Aug 2017, In: Journal of Archaeological Science: Reports. 14, p. 603-608 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
Mak, Sarah Siu Tze, Gopalakrishnan, Shyam, Carøe, C., Geng, C., Liu, Shanlin, Sinding, Mikkel Holger Strander, Kuderna, L. F. K., Zhang, W., Fu, S., Vieira, Filipe Garrett, Germonpré, M., Bocherens, H., Fedorov, S., Petersen, Bent, Sicheritz-Pontén, T., Marques-Bonet, T., KU, thw266, Jiang, H. & Gilbert, M Thomas P, Aug 2017, In: GigaScience. 6, 8, p. 1–13 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Asian wild rice is a hybrid swarm with extensive gene flow and feralization from domesticated rice
Wang, H., Vieira, Filipe Garrett, Crawford, J. E., Chu, C. & Nielsen, R., Jun 2017, In: Genome Research. 27, 6, p. 1029-1038 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes
Sanchez Barreiro, F., Vieira, Filipe Garrett, Martin, M. D., Haile, James Seymour, Gilbert, M Thomas P & Wales, N., 2017, In: Molecular Ecology Resources. 17, 2, p. 209-220 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2016
- Published
The power of inbreeding: NGS-based GWAS of rice reveals convergent evolution during rice domestication
Wang, H., Xu, X., Vieira, Filipe Garrett, Xiao, Y., Li, Z., Wang, J., Nielsen, Rasmus & Chu, C., 6 Jul 2016, In: Molecular Plant. 9, 7, p. 975-985 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-culture coevolution promotes rapid divergence of killer whale ecotypes
Foote, A. D., Vijay, N., Avila Arcos, M. D. C., Baird, R. W., Durban, J. W., Fumagalli, M., Gibbs, R. A., Hanson, M. B., Korneliussen, Thorfinn Sand, Martin, M. D., Robertson, K. M., Sousa, V. C., Vieira, Filipe Garrett, Vinař, T., Wade, P., Worley, K. C., Excoffier, L., Morin, P. A., Gilbert, M Thomas P & Wolf, J. B. W., May 2016, In: Nature Communications. 7, 12 p., 11693.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating IBD tracts from low coverage NGS data
Vieira, Filipe Garrett, Albrechtsen, Anders & Nielsen, Rasmus, 2016, In: Bioinformatics. 32, 14, p. 2096-2102 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic characterization of a South American Phytophthora hybrid mandates reassessment of the geographic origins of Phytophthora infestans
Martin, M. D., Vieira, Filipe Garrett, Ho, S. Y. W., Wales, N., Schubert, Mikkel, Seguin-Orlando, A., Ristaino, J. B. & Gilbert, M Thomas P, 2016, In: Molecular Biology and Evolution. 33, 2, p. 478-491 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic insights into the Ixodes scapularis tick vector of Lyme disease
Gulia-Nuss, M., Nuss, A. B., Meyer, J. M., Sonenshine, D. E., Roe, R. M., Waterhouse, R. M., Sattelle, D. B., de la Fuente, J., Ribeiro, J. M., Megy, K., Thimmapuram, J., Miller, J. R., Walenz, B. P., Koren, S., Hostetler, J. B., Thiagarajan, M., Joardar, V. S., Hannick, L. I., Bidwell, S., Hammond, M. P. & 73 others, , 2016, In: Nature Communications. 7, 13 p., 10507.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic population structure of freshwater-resident and anadromous ide (Leuciscus idus) in north-western Europe
Skovrind, Mikkel, Olsen, Morten Tange, Vieira, Filipe Garrett, Antunes Pacheco, George, Carl, Henrik, Gilbert, M Thomas P & Møller, Peter Rask, 2016, In: Ecology and Evolution. 6, 4, p. 1064-1074 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Improving the estimation of genetic distances from Next-Generation Sequencing data
Vieira, Filipe Garrett, Lassalle, F., Korneliussen, Thorfinn Sand & Fumagalli, M., 2016, In: Biological Journal of the Linnean Society. 117, 1, p. 139-149 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2015
- Published
Evolutionary genomics and conservation of the endangered Przewalski's horse
Der Sarkissian, C., Ermini, L., Schubert, M., Yang, M. A., Sanz, P. L., Fumagalli, M., Jónsson, H., Bar-Gal, G. K., Albrechtsen, A., Garrett Vieira, F. J., Petersen, B., Ginolhac, A., Seguin-Orlando, A., Magnussen, K., Fages, A. A., Gamba, C., Lorente-Galdos, B., Polani, S., Steiner, C., Neuditschko, M. & 17 others, , 2015, In: Current Biology. 25, 19, p. 2577-2583 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The origin and evolution of maize in the Southwestern United States: [+ erratum]
Rodrigues da Fonseca, Rute Andreia, Smith, B. D., Wales, N., Cappellini, Enrico, Skoglund, P., Fumagalli, M., Samaniego Castruita, J. A., Carøe, C., Avila Arcos, M. D. C., Hufnagel, D. E., Korneliussen, Thorfinn Sand, Vieira, Filipe Garrett, Jakobsson, M., Arriaza, B., Willerslev, Eske, Nielsen, Rasmus, Hufford, M. B., Albrechtsen, Anders, Ross-Ibarra, J. & Gilbert, M Thomas P, 2015, In: Nature Plants. 1, 5 p., 14003.Research output: Contribution to journal › Letter › Research › peer-review
- 2014
Mycobacterial phylogenomics: an enhanced method for gene turnover analysis reveals uneven levels of gene gain and loss among species and gene families
Librado, P., Vieira, Filipe Garrett, Sánchez-Gracia, A., Kolokotronis, S. O. & Rozas, J., Jun 2014, In: Genome Biology and Evolution. 6, 6, p. 1454-1465 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 105377460
Most downloads
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476
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Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
284
downloads
Genomic insights into the Ixodes scapularis tick vector of Lyme disease
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
258
downloads
Asian wild rice is a hybrid swarm with extensive gene flow and feralization from domesticated rice
Research output: Contribution to journal › Journal article › Research › peer-review
Published