Matthew James Collins

Matthew James Collins

Professor


  1. 2020
  2. Published

    Histological study of sheep skin transformation during the recreation of historical parchment manufacture

    Fourneau, M., Canon, C., Van Vlaender, D., Collins, Matthew James, Fiddyment, S., Poumay, Y. & Deparis, O., 2020, In: Heritage Science. 8, 1, 7 p., 78.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    How to get your goat: automated identification of species from MALDI-ToF spectra

    Hickinbotham, S., Fiddyment, S., Stinson, T. L. & Collins, Matthew James, 2020, In: Bioinformatics. 36, 12, p. 3719-3725 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Rapid loss of endogenous DNA in pig bone buried in five different environments

    Eriksen, A. M. H., Matthiesen, H., Kontopoulos, I., Gregory, D., Snoeck, C., KU, thw266, Collins, Matthew James & Gilbert, M Thomas P, 2020, In: Archaeometry. 62, 4, p. 827-846 20 p.

    Research output: Contribution to journalReviewResearchpeer-review

  5. Published

    Saving Bones: a direct comparison of FTIR-ATR, whole bone percent nitrogen, and NIR

    Ryder, C. M., Sponheimer, M., Shokry, Hussein, Lazagabaster, I. A., Marom, N., Monnier, G. F., Collins, Matthew James, Deviese, T. & Higham, T., 2020, p. 243-243.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  6. Published

    The biomolecular characterization of a finger ring contextually dated to the emergence of the Early Neolithic from Syltholm, Denmark

    Jensen, Theis Zetner Trolle, Mackie, Meaghan, Taurozzi, Alberto John, Lanigan, Liam Thomas, Gundelach, C., Olsen, J., Sørensen, S. A., Collins, Matthew James, Sørensen, Mikkel & Schroeder, Hannes, 2020, In: Royal Society Open Science. 7, 1, 16 p., 191172.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. 2019
  8. Published

    Identifying Archaeological Bone via Non-Destructive ZooMS and the Materiality of Symbolic Expression: Examples from Iroquoian Bone Points

    McGrath, K., Rowsell, K., St-Pierre, C. G., Tedder, A., Foody, G., Roberts, C., Speller, C. & Collins, Matthew James, 30 Jul 2019, In: Scientific Reports. 9, 10 p., 11027.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Ancient cattle genomics, origins, and rapid turnover in the Fertile Crescent

    Verdugo, M. P., Mullin, V. E., Scheu, A., Mattiangeli, V., Daly, K. G., Delser, P. M., Hare, A. J., Burger, J., Collins, M. J., Kehati, R., Hesse, P., Fulton, D., Sauer, E. W., Mohaseb, F. A., Davoudi, H., Khazaeli, R., Lhuillier, J., Rapin, C., Ebrahimi, S., Khasanov, M. & 21 others, Farhad Vahidi, S. M., MacHugh, D. E., Ertuğrul, O., Koukouli-Chrysanthaki, C., Sampson, A., Kazantzis, G., Kontopoulos, I., Bulatovic, J., Stojanović, I., Mikdad, A., Benecke, N., Linstädter, J., Sablin, M., Bendrey, R., Gourichon, L., Arbuckle, B. S., Mashkour, M., Orton, D., Horwitz, L. K., Teasdale, M. D. & Bradley, D. G., 1 Jan 2019, In: Science. 365, 6449, p. 173-176 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    A 5700 year-old human genome and oral microbiome from chewed birch pitch

    Jensen, T. Z. T., Niemann, J., Iversen, K. H., Fotakis, A. K., Gopalakrishnan, S., Vågene, Å. J., Pedersen, M. W., Sinding, M-H. S., Ellegaard, M. R., Allentoft, M. E., Lanigan, L. T., Taurozzi, A. J., Nielsen, S. H., Dee, M. W., Mortensen, M. N., Christensen, M. C., Sørensen, S. A., Collins, M. J., Gilbert, M. T. P., Sikora, M. & 2 others, Rasmussen, Simon & Schroeder, Hannes, 2019, In: Nature Communications. 10, 10 p., 5520.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Analysis of faecal substrates sheds light into coprostanol origin, preservation and diagenesis

    Sistiaga Gutierrez, Maria Ainara, Poyet, M., Groussin, M., Collins, Matthew James & Summons, R. E., 2019, 29th International Meeting on Organic Geochemistry. European Association of Geoscientists and Engineers, p. 1-2 (Conference Proceedings, Vol. 2019).

    Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsResearchpeer-review

  12. Published

    Ancient amino acids from fossil feathers in amber

    McCoy, V. E., Gabbott, S. E., Penkman, K., Collins, Matthew James, Presslee, S., Holt, J., Grossman, H., Wang, B., Kraemer, M. M. S., Delclòs, X. & Peñalver, E., 2019, In: Scientific Reports. 9, 8 p., 6420.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Bone diagenesis in a Mycenaean secondary burial (Kastrouli, Greece)

    Kontopoulos, I., Penkman, K., Liritzis, I. & Collins, Matthew James, 2019, In: Archaeological and Anthropological Sciences. 11, 10, p. 5213-5230

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Enamel proteome shows that Gigantopithecus was an early diverging pongine

    Welker, Frido, Ramos Madrigal, Jazmin, Kuhlwilm, M., Liao, W., Gutenbrunner, P., de Manuel, M., Samodova, D., Mackie, Meaghan, Allentoft, Morten Erik, Bacon, A., Collins, Matthew James, Cox, J., Lalueza-Fox, C., Olsen, Jesper Velgaard, Demeter, Fabrice, Wang, W., Marques-Bonet, T. & Cappellini, Enrico, 2019, In: Nature. 576, p. 262-265

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Ionisation bias undermines the use of matrix-assisted laser desorption/ionisation for estimating peptide deamidation: synthetic peptide studies demonstrate electrospray ionisation gives more reliable response ratios

    Simpson, J. P., Fascione, M., Bergström, E., Wilson, J., Collins, Matthew James, Penkman, K. E. H. & Thomas-Oates, J., 2019, In: Rapid Communications in Mass Spectrometry. 33, 12, p. 1049-1057 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Medieval women's early involvement in manuscript production suggested by lapis lazuli identification in dental calculus

    Radini, A., Tromp, M., Beach, A., Tong, E., Speller, C., McCormick, M., Dudgeon, J. V., Collins, Matthew James, Rühli, F., Kröger, R. & Warinner, C., 2019, In: Science Advances. 26, 2, 9 p., eaau7126.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    New insights into Neolithic milk consumption through proteomic analysis of dental calculus

    Charlton, S., Ramsøe, Abigail Daisy, Collins, Matthew James, Craig, O., Fischer, R., Alexander, M. & Speller, C., 2019, In: Archaeological and Anthropological Sciences. 11, 11, p. 6183-6196 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Palaeoproteomics resolves sloth relationships

    Presslee, S., Slater, G. J., Pujos, F., Forasiepi, A. M., Fischer, R., Molloy, K., Mackie, M., Olsen, J. V., Kramarz, A., Taglioretti, M., Scaglia, F., Lezcano, M., Lanata, J. L., Southon, J., Feranec, R., Bloch, J., Hajduk, A., Martin, F. M., Salas Gismondi, R., Reguero, M. & 6 others, de Muizon, C., Greenwood, A., Chait, B. T., Penkman, K., Collins, Matthew James & MacPhee, R. D. E., 2019, In: Nature Ecology & Evolution. 3, p. 1121-1130

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Petrous bone diagenesis: a multi-analytical approach

    Kontopoulos, I., Penkman, K., McAllister, G. D., Lynnerup, Niels, Damgaard, P. B., Hansen, H. B., Allentoft, Morten Erik & Collins, Matthew James, 2019, In: Palaeogeography, Palaeoclimatology, Palaeoecology. 518, p. 143-154 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    So you want to do biocodicology? A field guide to the biological analysis of parchment

    Fiddyment, S., Teasdale, M. D., Vnouček, J., Lévêque, É., Binois, A. & Collins, Matthew James, 2019, In: Heritage Science. 7, 10 p., 35.

    Research output: Contribution to journalReviewResearchpeer-review

  21. 2018
  22. Published

    Ancient proteins from ceramic vessels at Çatalhöyük West reveal the hidden cuisine of early farmers

    Hendy, J., Colonese, A. C., Franz, I., Fernandes, R., Fischer, R., Orton, D., Lucquin, A., Spindler, L., Anvari, J., Stroud, E., Biehl, P. F., Speller, C., Boivin, N., Mackie, Meaghan, Jersie-Christensen, R. R., Olsen, Jesper Velgaard, Collins, Matthew James, Craig, O. E. & Rosenstock, E., 1 Dec 2018, In: Nature Communications. 9, 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    Preparation of bone powder for FTIR-ATR analysis: The particle size effect

    Kontopoulos, Ioannis, Presslee, S., Penkman, K. & Collins, Matthew James, 1 Nov 2018, In: Vibrational Spectroscopy. 99, p. 167-177

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    A guide to ancient protein studies

    Hendy, J., Welker, Frido, Demarchi, B., Speller, C., Warinner, C. & Collins, Matthew James, 2018, In: Nature Ecology & Evolution. 2, p. 791-799 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Ancient goat genomes reveal mosaic domestication in the Fertile Crescent

    Daly, K. G., Maisano Delser, P., Mullin, V. E., Scheu, A., Mattiangeli, V., Teasdale, M. D., Hare, A. J., Burger, J., Verdugo, M. P., Collins, M. J., Kehati, R., Erek, C. M., Bar-oz, G., Pompanon, F., Cumer, T., Çakırlar, C., Mohaseb, A. F., Decruyenaere, D., Davoudi, H., Çevik, Ö. & 20 others, Rollefson, G., Vigne, J., Khazaeli, R., Fathi, H., Doost, S. B., Rahimi Sorkhani, R., Vahdati, A. A., Sauer, E. W., Azizi Kharanaghi, H., Maziar, S., Gasparian, B., Pinhasi, R., Martin, L., Orton, D., Arbuckle, B. S., Benecke, N., Manica, A., Horwitz, L. K., Mashkour, M. & Bradley, D. G., 2018, In: Science. 361, 6397, p. 85-88

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Collagen proteins exchange oxygen with demineralisation and gelatinisation reagents and also with atmospheric moisture

    von Holstein, I. C. C., von Tersch, M., Coutu, A. N., Penkman, K. E. H., Makarewicz, C. A. & Collins, Matthew James, 2018, In: Rapid Communications in Mass Spectrometry. 32, 6, p. 523-534 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Comment on "Ecological niche of Neanderthals from Spy Cave revealed by nitrogen isotopes of individual amino acids in collagen" [J. Hum. Evol. 93 (2016) 82-90]

    O'Connell, T. C. & Collins, Matthew James, 2018, In: Journal of Human Evolution. 117, p. 53-55 3 p.

    Research output: Contribution to journalEditorialResearchpeer-review

  28. Published

    Diagenesis of archaeological bone and tooth

    Kendall, C., Eriksen, A. M. H., Kontopoulos, I., Collins, Matthew James & Turner-Walker, G., 2018, In: Palaeogeography, Palaeoclimatology, Palaeoecology - An International Journal for the Geo-Sciences. 491, p. 21-37 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Exaggerated expectations in ancient starch research and the need for new taphonomic and authenticity criteria

    Mercader, J., Akeju, T., Brown, M., Bundala, M., Collins, Matthew James, Copeland, L., Crowther, A., Dunfield, P., Henry, A., Inwood, J., Itambu, M., Kim, J., Larter, S., Longo, L., Oldenburg, T., Patalano, R., Sammynaiken, R., Soto, M., Tyler, R. & Xhauflair, H., 2018, In: Facets. 3, p. 777-798 22 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Proteomic evidence of dietary sources in ancient dental calculus

    Hendy, J., Warinner, C., Bouwman, A., Collins, Matthew James, Fiddyment, S., Fischer, R., Hagan, R., Hofman, C. A., Holst, M., Chaves, E., Klaus, L., Larson, G., Mackie, Meaghan, McGrath, K., Mundorff, A. Z., Radini, A., Rao, H., Trachsel, C., Velsko, I. M. & Speller, C. F., 2018, In: Proceedings of the Royal Society B: Biological Sciences. 285, 1883, 977.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Species identification using ZooMS, with reference to the exploitation of animal resources in the medieval town of Odense

    Brandt, Luise Ørsted, Haase, K. & Collins, Matthew James, 2018, In: Danish Journal of Archaeology. 7, 2, p. 139-153

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published
  33. 2017
  34. Published

    The dental calculus metabolome in modern and historic samples

    Velsko, I. M., Overmyer, K. A., Speller, C., Klaus, L., Collins, Matthew James, Loe, L., Frantz, L. A. F., Sankaranarayanan, K., Lewis, C. M., Martinez, J. B. R., Chaves, E., Coon, J. J., Larson, G. & Warinner, C., Nov 2017, In: Metabolomics. 13, 11, 17 p., 134.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    The York Gospels: a 1000-year biological palimpsest

    Teasdale, M. D., Fiddyment, S., Vnouček, J., Mattiangeli, V., Speller, C., Binois, A., Carver, M., Dand, C., Newfield, T. P., Webb, C. C., Bradley, D. G. & Collins, Matthew James, 25 Oct 2017, In: Royal Society Open Science. 4, 10, 11 p., 170988.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    Preservation of the metaproteome: variability of protein preservation in ancient dental calculus

    Mackie, Meaghan, Hendy, J., Ramsøe, Abigail Daisy, Sperduti, A., Holst, M., Collins, Matthew James & Speller, C. F., 11 Aug 2017, In: STAR: Science & Technology of Archaeological Research. 3, 1, p. 74-86 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    New criteria for the molecular identification of cereal grains associated with archaeological artefacts

    Colonese, A. C., Hendy, J., Lucquin, A., Speller, C. F., Collins, Matthew James, Carrer, F., Gubler, R., Kühn, M., Fischer, R. & Craig, O. E., 26 Jul 2017, In: Scientific Reports. 7, 7 p., 6633.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Multiple Microanalyses of a Sample from the Vinland Map

    Sommer, D. V. P., Mühlen Axelsson, K., Collins, Matthew James, Fiddyment, S., Bredal-Jørgensen, J., Simonsen, K. P., Lauridsen, C. B. & Larsen, R., Apr 2017, In: Archaeometry. 59, 2, p. 287-301

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Variations in glutamine deamidation for a Châtelperronian bone assemblage as measured by peptide mass fingerprinting of collagen

    Welker, Frido, Soressi, M. A., Roussel, M., van Riemsdijk, I., Hublin, J. & Collins, Matthew James, 4 Jan 2017, In: STAR: Science & Technology of Archaeological Research. 3, 1, p. 15-27 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Aspartic acid racemization: Applications to forensic and archaeological age estimation

    Griffin, R. C. & Collins, Matthew James, 1 Jan 2017, Mechanisms Linking Aging, Diseases and Biological Age Estimation. Zapico, S. C. (ed.). CRC Press, p. 47-56 10 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

  41. Published

    The identification of archaeological eggshell using peptide markers

    Presslee, S., Wilson, J., Woolley, J., Best, J., Russell, D., Radini, A., Fischer, R., Kessler, B., Boano, R., Collins, Matthew James & Demarchi, B., 2017, In: STAR: Science & Technology of Archaeological Research. 3, 1, p. 89-99 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. 2016
  43. A mass spectrometry method for the determination of the species of origin of gelatine in foods and pharmaceutical products

    Grundy, H. H., Reece, P., Buckley, M., Solazzo, C. M., Dowle, A. A., Ashford, D., Charlton, A. J., Wadsley, M. K. & Collins, Matthew James, 2016, In: Food Chemistry. 190, p. 276-284 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Barcoding the largest animals on Earth: ongoing challenges and molecular solutions in the taxonomic identification of ancient cetaceans

    Speller, C., Van Den Hurk, Y., Charpentier, A., Rodrigues, A., Gardeisen, A., Wilkens, B., McGrath, K., Rowsell, K., Spindler, L., Collins, Matthew James & Hofreiter, M., 2016, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 371, 1702, 11 p., 20150332.

    Research output: Contribution to journalReviewResearchpeer-review

  45. Finding Britain's last hunter-gatherers: a new biomolecular approach to ‘unidentifiable’ bone fragments utilising bone collagen

    Charlton, S., Alexander, M., Collins, Matthew James, Milner, N., Mellars, P., O'Connell, T. C., Stevens, R. E. & Craig, O. E., 2016, In: Journal of Archaeological Science. 73, p. 55-61 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Genomic signals of migration and continuity in Britain before the Anglo-Saxons

    Martiniano, R., Caffell, A., Holst, M., Hunter-Mann, K., Montgomery, J., Müldner, G., McLaughlin, R. L., Teasdale, M. D., Van Rheenen, W., Veldink, J. H., van den Berg, L. H., Hardiman, O., Carroll, M., Roskams, S., Oxley, J., Morgan, C., Thomas, M. G., Barnes, I., McDonnell, C., Collins, M. J. & 1 others, Bradley, D. G., 2016, In: Nature Communications. 7, 8 p., 10326.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Mapping the Elephants of the 19th Century East African Ivory Trade with a Multi-Isotope Approach

    Coutu, A. N., Lee-Thorp, J., Collins, Matthew James & Lane, P. J., 2016, In: PLoS ONE. 11, 10, 23 p., e0163606.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Palaeoproteomic evidence identifies archaic hominins associated with the Châtelperronian at the Grotte du Renne

    Welker, Frido, Hajdinjak, M., Talamo, S., Jaouen, K., Dannemann, M., David, F., Julien, M., Meyer, M., Kelso, J., Barnes, I., Brace, S., Kamminga, P., Fischer, R., Kessler, B. M., Stewart, J. R., Pääbo, S., Collins, Matthew James & Hublin, J., 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 40, p. 11162-11167 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Poor preservation of antibodies in archaeological human bone and dentine

    Kendall, R., Hendy, J., Collins, Matthew James, Millard, A. R. & Gowland, R. L., 2016, In: Science and Technology of Archaeological Research. 2, 1, p. 15-24 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Protein sequences bound to mineral surfaces persist into deep time

    Demarchi, B., Hall, S., Roncal-Herrero, T., Freeman, C. L., Woolley, J., Crisp, M. K., Wilson, J., Fotakis, A. K., Fischer, R., Kessler, B. M., Jersie-Christensen, R. R., Olsen, J. V., Haile, J., Thomas, J., Marean, C. W., Parkington, J., Presslee, S., Lee-Thorp, J., Ditchfield, P., Hamilton, J. F. & 16 others, Ward, M. W., Wang, C. M., Shaw, M. D., Harrison, T., Domínguez-Rodrigo, M., MacPhee, R. D. E., Kwekason, A., Ecker, M., Kolska Horwitz, L., Chazan, M., Kröger, R., Thomas-Oates, J., Harding, J. H., Cappellini, Enrico, Penkman, K. & Collins, Matthew James, 2016, In: eLife. 5, 50 p., e17092.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Provenancing archaeological wool textiles from medieval northern Europe by light stable isotope analysis (δ13C, δ15N, δ2H)

    Von Holstein, I. C. C., Rogers, P. W., Craig, O. E., Penkman, K. E. H., Newton, J. & Collins, Matthew James, 2016, In: PLoS ONE. 11, 10, 27 p., e0162330.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Technological Analysis of the World's Earliest Shamanic Costume: A Multi-Scalar, Experimental Study of a Red Deer Headdress from the Early Holocene Site of Star Carr, North Yorkshire, UK

    Little, A., Elliott, B., Conneller, C., Pomstra, D., Evans, A. A., Fitton, L. C., Holland, A., Davis, R., Kershaw, R., O'Connor, S., O'Connor, T., Sparrow, T., Wilson, A. S., Jordan, P., Collins, M. J., Colonese, A. C., Craig, O. E., Knight, R., Lucquin, A. J. A., Taylor, B. & 1 others, Milner, N., 2016, In: PLoS ONE. 11, 4, 10 p., e0152136.

    Research output: Contribution to journalJournal articleResearchpeer-review

  53. The challenge of identifying tuberculosis proteins in archaeological tissues

    Hendy, J., Collins, Matthew James, Teoh, K. Y., Ashford, D. A., Thomas-Oates, J., Donoghue, H. D., Pap, I., Minnikin, D. E., Spigelman, M. & Buckley, M., 2016, In: Journal of Archaeological Science. 66, p. 146-153 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  54. The effects of demineralisation and sampling point variability on the measurement of glutamine deamidation in type I collagen extracted from bone

    Simpson, J. P., Penkman, K. E. H., Demarchi, B., Koon, H., Collins, Matthew James, Thomas-Oates, J., Shapiro, B., Stark, M. & Wilson, J., 2016, In: Journal of Archaeological Science. 69, p. 29-38 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  55. Using combined biomolecular methods to explore whale exploitation and social aggregation in hunter-gatherer-fisher society in Tierra del Fuego

    Evans, S., Godino, I. B. I., Álvarez, M., Rowsell, K., Collier, P., de Goodall, R. N. P., Mulville, J., Lacrouts, A., Collins, Matthew James & Speller, C., 2016, In: Journal of Archaeological Science: Reports. 6, p. 757-767 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

ID: 166038088