Mikkel Winther Pedersen
Tenure Track Assistant Professor
Section for Geogenetics
Øster Voldgade 5-7
1350 København K
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euka: Robust tetrapodic and arthropodic taxa detection from modern and ancient environmental DNA using pangenomic reference graphs
Vogel, N. A., Rubin, J. D., Swartz, M., Vlieghe, J., Sackett, P. W., Pedersen, A. G., Pedersen, Mikkel Winther & Renaud, G., 2023, In: Methods in Ecology and Evolution. 14, 11, p. 2717-2727 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Spatial distribution of sedimentary DNA is taxon-specific and linked to local occurrence at intra-lake scale
Wang, Yi, Wessels, M., Pedersen, Mikkel Winther & Epp, L. S., 2023, In: Communications Earth and Environment. 4, 13 p., 172.Research output: Contribution to journal › Journal article › Research › peer-review
Shotgun environmental DNA, pollen, and macrofossil analysis of lateglacial lake sediments from southern Sweden
Parducci, L., Alsos, I. G., Unneberg, P., Pedersen, Mikkel Winther, Han, L., Lammers, Y., Salonen, J. S., Väliranta, M. M., Slotte, T. & Wohlfarth, B., 2019, In: Frontiers in Ecology and Evolution. 7, JUN, 189.Research output: Contribution to journal › Journal article › Research › peer-review
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Sedimentary ancient DNA from Lake Skartjørna, Svalbard: assessing the resilience of arctic flora to Holocene climate change
Alsos, I. G., Sjögren, P., Edwards, M. E., Landvik, J. Y., Gielly, L., Forwick, M., Coissac, E., Brown, A. G., Jakobsen, L. V., Føreid, M. K. & Pedersen, Mikkel Winther, 2016, In: Holocene. 26, 4, p. 627-642 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Reply to: When did mammoths go extinct?
Wang, Y., Prohaska, A., Dong, H., Alberti, A., Alsos, I. G., Beilman, D. W., Bjørk, A. A., Cao, J., Cherezova, A. A., Coissac, E., De Sanctis, B., Denoeud, F., Dockter, C., Durbin, R., Edwards, M. E., Edwards, N. R., Esdale, J., Fedorov, G. B., Fernandez-Guerra, A., Froese, D. G. & 32 others, , 2022, In: Nature. 612, 7938, p. E4-E6Research output: Contribution to journal › Comment/debate › Research › peer-review
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Postglacial viability and colonization in North America’s ice-free corridor
Pedersen, Mikkel Winther, Ruter, Anthony Henry, Schweger, C., Friebe, H., Staff, R. A., Kjeldsen, Kristian Kjellerup, Zepeda Mendoza, M. L., Beaudoin, A. B., Zutter, C., Larsen, Nicolaj Krog, Potter, B. A., Nielsen, Rasmus, Rainville, R. A., Orlando, L. A. A., Meltzer, D. J., Kjær, Kurt H. & Willerslev, Eske, 2016, In: Nature. 537, 7618, p. 45–49 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Population genomics of the Viking world: [incl. correction]
Margaryan, A., Lawson, D. J., Sikora, M., Racimo, F., Rasmussen, S., Moltke, I., Cassidy, L. M., Jørsboe, E., Ingason, A., Pedersen, M. W., Korneliussen, T., Wilhelmson, H., Buś, M. M., de Barros Damgaard, P., Martiniano, R., Renaud, G., Bhérer, C., Moreno-Mayar, J. V., Fotakis, A. K., Allen, M. & 30 others, , 2020, In: Nature. 585, 7825, p. 390-396 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Population characteristics of a large whale shark aggregation inferred from seawater environmental DNA
Sigsgaard, E. E., Nielsen, Ida Broman, Bach, S. S., Lorenzen, Eline, Robinson, D. P., Knudsen, Steen Wilhelm, Pedersen, Mikkel Winther, Al Jaidah, M., Orlando, L. A. A., Willerslev, Eske, Møller, Peter Rask & Thomsen, P. F., 21 Nov 2016, In: Nature Ecology & Evolution. 1, 1, 4 p., 0004.Research output: Contribution to journal › Letter › Research › peer-review
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Planktonic foraminifera-derived environmental DNA extracted from abyssal sediments preserves patterns of plankton macroecology
Morard, R., Lejzerowicz, F., Darling, K. F., Lecroq-Bennet, B., Pedersen, Mikkel Winther, Orlando, L. A. A., Pawlowski, J., Mulitza, S., de Vargas, C. & Kucera, M., 6 Jun 2017, In: Biogeosciences. 14, 11, p. 2741-2754 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Perspectives and Future Developments Within Sedimentary DNA Research
Holman, Luke Earl, Wang, Yi, Sawafuji, Rikai, Epp, L. S., Bohmann, Kristine & Pedersen, Mikkel Winther, 2023, Tracking Environmental Change Using Lake Sediments: Sedimentary DNA. Capo, E., Barouillet, C. & Smol, J. P. (eds.). Springer, Vol. 6. p. 393-416 (Developments in Paleoenvironmental Research, Vol. 21).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
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Past impact of warming on the Greenland Ice Sheet - second field season
Larsen, N. K., Kjær, Kurt H., Bjørk, Anders Anker, Funder, Svend Visby, Kjeldsen, Kristian Kjellerup, Korsgaard, N. J., Pedersen, Mikkel Winther, Willerslev, Eske, Hansen, Eric Steen & Mikkelsen, N., 2010, Swedish Polar Research Secretariat - Årsbok / Yearbook 2009: Polarforskningssekretariatet Årsbok 2009. Rickberg, S. (ed.). Polarforskningssekretariatet, p. 40-42 3 p. (Polarforskningssekretariatets årsbok, Vol. 2009).Research output: Chapter in Book/Report/Conference proceeding › Report chapter › Communication
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Paleo-Environmental Reconstruction Using Ancient DNA
Pedersen, Mikkel Winther, 2016, Natural History Museum of Denmark, Faculty of Science, University of Copenhagen. 288 p.Research output: Book/Report › Ph.D. thesis › Research
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Late Quaternary dynamics of Arctic biota from ancient environmental genomics: [+ Correction]
Wang, Y., Pedersen, M. W., Alsos, I. G., De Sanctis, B., Racimo, F., Prohaska, A., Coissac, E., Owens, H. L., Merkel, M. K. F., Fernandez-Guerra, A., Rouillard, A., Lammers, Y., Alberti, A., Denoeud, F., Money, D., Ruter, A. H., McColl, H., Larsen, N. K., Cherezova, A. A., Edwards, M. E. & 30 others, , 2021, In: Nature. 600, 7887, p. 86–92 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Late Pleistocene stickleback environmental genomes reveal the chronology of freshwater adaptation
Laine, J., Mak, Sarah Siu Tze, Martins, N. F. G., Chen, Xihan, Gilbert, M Thomas P, Jones, F. C., Pedersen, Mikkel Winther, Romundset, A. & Foote, A. D., 2024, In: Current Biology. 34, 5, p. 1142-1147.e6 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Late Pleistocene palaeoenvironments and a possible glacial refugium on northern Vancouver Island, Canada: Evidence for the viability of early human settlement on the northwest coast of North America
Hebda, C. F. G., McLaren, D., Mackie, Q., Fedje, D., Pedersen, Mikkel Winther, Willerslev, Eske, Brown, K. J. & Hebda, R. J., 2022, In: Quaternary Science Reviews. 279, 21 p., 107388.Research output: Contribution to journal › Journal article › Research › peer-review
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Late Pleistocene Faunal Assemblages from Karst Cave Settings on Northern Vancouver Island, Canada
McLaren, D., Wigen, R., Fedje, D., Dyck, A., Hebda, C. F. G., Morien, E., Pedersen, Mikkel Winther, Willerslev, Eske, Rutledge, L. Y., Barrera, M. A., Stafford, J., Wall, D. & Letham, B., 2023, In: PaleoAmerica. 9, 3, p. 216-236 21 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity: Overview and Recommendations
Capo, E., Giguet-Covex, C., Rouillard, A., Nota, K., Heintzman, P. D., Vuillemin, A., Ariztegui, D., Arnaud, F., Belle, S., Bertilsson, S., Bigler, C., Bindler, R., Brown, A. G., Clarke, C. L., Crump, S. E., Debroas, D., Englund, G., Ficetola, G. F., Garner, R. E., Gauthier, J. & 30 others, , 2021, In: Quaternary. 4, 1, 58 p., 6.Research output: Contribution to journal › Review › Research › peer-review
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Genomic ancestry, diet and microbiomes of Upper Palaeolithic hunter-gatherers from San Teodoro cave (Sicily, Italy)
Scorrano, Gabriele, Nielsen, Sofie Holtsmark, Vetro, D. L., Sawafuji, R., Mackie, Meaghan, Margaryan, Ashot, Fotaki, Anna Katerina, Martínez-Labarga, C., Fabbri, P. F., Allentoft, Morten Erik, Carra, M., Martini, F., Rickards, O., Olsen, Jesper Velgaard, Pedersen, Mikkel Winther, Cappellini, Enrico & Sikora, Martin, 2022, In: Communications Biology. 5Research output: Contribution to journal › Journal article › Research › peer-review
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Food recourses of the Khog Gzung site on the Tibetan Plateau revealed by sedimentary ancient DNA
Gu, Z., Gao, Y., Wang, Y., Yang, J., Ran, J., Yang, X., Shargan, W., Pedersen, Mikkel Winther, Sheng, G., Wang, Yucheng & Chen, F., 2023, In: Science China Earth Sciences. 66, 4, p. 840-851 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Evidence of human occupation in Mexico around the Last Glacial Maximum
Ardelean, C. F., Becerra-Valdivia, L., Pedersen, M. W., Schwenninger, J. L., Oviatt, C. G., Macías-Quintero, J. I., Arroyo-Cabrales, J., Sikora, M., Ocampo-Díaz, Y. Z. E., Rubio-Cisneros, I. I., Watling, J. G., de Medeiros, V. B., De Oliveira, P. E., Barba-Pingarón, L., Ortiz-Butrón, A., Blancas-Vázquez, J., Rivera-González, I., Solís-Rosales, C., Rodríguez-Ceja, M., Gandy, D. A. & 8 others, , 6 Aug 2020, In: Nature. 584, 7819, p. 87-92 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Environmental genomics of Late Pleistocene black bears and giant short-faced bears
Pedersen, Mikkel Winther, De Sanctis, B., Saremi, N. F., Sikora, Martin, Puckett, E. E., Gu, Z., Moon, K. L., Kapp, J. D., Vinner, Lasse, Vardanyan, Z., Ardelean, C. F., Arroyo-Cabrales, J., Cahill, J. A., Heintzman, P. D., Zazula, G., MacPhee, R. D. E., Shapiro, B., Durbin, R. & Willerslev, Eske, 2021, In: Current Biology. 31, 12, p. 2728-2736.e8 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
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DNA evidence of bowhead whale exploitation by Greenlandic Paleo-Inuit 4,000 years ago
Seersholm, Frederik Valeur, Pedersen, Mikkel Winther, Søe, M. J., Shokry, H., Mak, Sarah Siu Tze, Ruter, Anthony Henry, Raghavan, M., Fitzhugh, W., Kjær, Kurt H., Willerslev, Eske, Meldgaard, Morten, Kapel, Christian & Hansen, Anders Johannes, 2016, In: Nature Communications. 7, 9 p., 13389.Research output: Contribution to journal › Journal article › Research › peer-review
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Community assembly processes underlying the temporal dynamics of glacial stream and lake bacterial communities
Gu, Z., Liu, K., Pedersen, Mikkel Winther, Wang, F., Chen, Y., Zeng, C. & Liu, Y., 2021, In: Science of the Total Environment. 761, 11 p., 143178.Research output: Contribution to journal › Journal article › Research › peer-review
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Chiquihuite Cave and America's Hidden Limestone Industries: A Reply to Chatters et al.
Ardelean, C. F., Pedersen, M. W., Schwenninger, J-L., Arroyo-Cabrales, J., Gandy, D. A., Sikora, M., Macías-Quintero, J. I., Huerta-Arellano, V., De La Rosa-Díaz, J. J., Ocampo-Díaz, Y. Z. E., Rubio-Cisneros, I. I., Barba-Pingarón, L., Ortíz-Butrón, A., Blancas-Vázquez, J., Solís-Rosales, C., Rodríguez-Ceja, M., Rivera-González, I., Navarro-Gutiérrez, Z., López-Jiménez, A., Marroquín-Fernández, M. B. & 2 others, , 2022, In: PaleoAmerica. 8, 1, p. 17-28Research output: Contribution to journal › Comment/debate › Research › peer-review
Archaeal community changes in Lateglacial lake sediments: Evidence from ancient DNA
Ahmed, E., Parducci, L., Unneberg, P., Ågren, R., Schenk, F., Rattray, J. E., Han, L., Muschitiello, F., Pedersen, Mikkel Winther, Smittenberg, R. H., Yamoah, K. A., Slotte, T. & Wohlfarth, B., 2018, In: Quaternary Science Reviews. 181, p. 19-29 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Ancient plant DNA in lake sediments
Parducci, L., Bennett, K. D., Ficetola, G. F., Alsos, I. G., Suyama, Y., Wood, J. R. & Pedersen, Mikkel Winther, May 2017, In: New Phytologist. 214, 3, p. 924-942 19 p.Research output: Contribution to journal › Review › Research › peer-review
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Ancient and modern environmental DNA
Pedersen, Mikkel Winther, Overballe-Petersen, S., Ermini, L., Der Sarkissian, C., Haile, James Seymour, Hellström, A. M., Spens, J., Thomsen, P. F., Bohmann, Kristine, Cappellini, Enrico, Schnell, I. B., Wales, N., Carøe, C., Campos, P., Schmidt, A. M. Z., Gilbert, M Thomas P, Hansen, Anders Johannes, Orlando, L. A. A. & Willerslev, Eske, 2015, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 370, 1660, 11 p., 20130383.Research output: Contribution to journal › Review › Research › peer-review
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Ancient Plant Genomics in Archaeology, Herbaria, and the Environment
Kistler, L., Bieker, V. C., Martin, M. D., Pedersen, Mikkel Winther, Ramos Madrigal, Jazmin & Wales, N., 2020, In: Annual Review of Plant Biology. 71, p. 605-629 25 p.Research output: Contribution to journal › Review › Research › peer-review
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Ancient Human Genomes and Environmental DNA from the Cement Attaching 2,000-Year-Old Head Lice Nits
Pedersen, Mikkel Winther, Antunes, C., Westbury, Binia De Cahsan, Moreno Mayar, J. Víctor, Sikora, Martin, Vinner, Lasse, Mann, D., Klimov, P. B., Black, S., Michieli, C. T., Braig, H. R. & Perotti, M. A., 2022, In: Molecular Biology and Evolution. 39, 2, 16 p., msab351.Research output: Contribution to journal › Journal article › Research › peer-review
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Ancient Biomolecules and Evolutionary Inference
Cappellini, Enrico, Prohaska, Ana, Racimo, Fernando, Welker, Frido, Pedersen, Mikkel Winther, Allentoft, Morten Erik, Damgaard, P. D. B., Gutenbrunner, P., Dunne, J., Hammann, S., Roffet-Salque, M., Ilardo, M., Moreno Mayar, J. Víctor, Wang, Yucheng, Sikora, Martin, Vinner, Lasse, Cox, J., Evershed, R. P. & Willerslev, Eske, 2018, In: Annual Review of Biochemistry. 87, 32 p., 36.Research output: Contribution to journal › Journal article › Research › peer-review
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A theoretical analysis of taxonomic binning accuracy
De Sanctis, B., Money, D., Pedersen, Mikkel Winther & Durbin, R., 2022, In: Molecular Ecology Resources. 22, 6, p. 2208-2219 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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A comparative study of ancient environmental DNA to pollen and macrofossils from lake sediments reveals taxonomic overlap and additional plant taxa
Pedersen, Mikkel Winther, Ginolhac, A., Orlando, L. A. A., Olsen, J., Andersen, K., Holm, J. M., Funder, Svend Visby, Willerslev, Eske & Kjær, Kurt H., 1 Sep 2013, In: Quaternary Science Reviews. 75, p. 161-168 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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A 5700 year-old human genome and oral microbiome from chewed birch pitch
Jensen, T. Z. T., Niemann, J., Iversen, K. H., Fotakis, A. K., Gopalakrishnan, S., Vågene, Å. J., Pedersen, M. W., Sinding, M-H. S., Ellegaard, M. R., Allentoft, M. E., Lanigan, L. T., Taurozzi, A. J., Nielsen, S. H., Dee, M. W., Mortensen, M. N., Christensen, M. C., Sørensen, S. A., Collins, M. J., Gilbert, M. T. P., Sikora, M. & 2 others, , 2019, In: Nature Communications. 10, 10 p., 5520.Research output: Contribution to journal › Journal article › Research › peer-review
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A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA
Kjær, K. H., Pedersen, M. W., De Sanctis, B., De Cahsan, B., Korneliussen, T. S., Michelsen, C. S., Sand, K. K., Jelavić, S., Ruter, A. H., Schmidt, A. M. A., Kjeldsen, K. K., Tesakov, A. S., Snowball, I., Gosse, J. C., Alsos, I. G., Wang, Y., Dockter, C., Rasmussen, M., Jørgensen, M. E., Skadhauge, B. & 19 others, , 2022, In: Nature. 612, 7939, p. 283-291 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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ngsLCA — A toolkit for fast and flexible lowest common ancestor inference and taxonomic profiling of metagenomic data
Wang, Yucheng, Korneliussen, Thorfinn Sand, Holman, Luke Earl, Manica, A. & Pedersen, Mikkel Winther, 2022, In: Methods in Ecology and Evolution. 13, 12, p. 2699-2708 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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137 ancient human genomes from across the Eurasian steppes
Damgaard, P. D. B., Marchi, N., Rasmussen, S., Peyrot, M., Renaud, G., Korneliussen, T. S., Moreno-Mayar, J. V., Pedersen, M. W., Goldberg, A., Usmanova, E., Baimukhanov, N., Loman, V., Hedeager, L., Pedersen, A. G., Nielsen, K., Afanasievl, G., Akmatov, K., Aldashev, A., Alpaslan, A., Baimbetov, G. & 55 others, , 2018, In: Nature. 557, 7705, p. 369-374 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 11219017
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Ancient Biomolecules and Evolutionary Inference
Research output: Contribution to journal › Journal article › Research › peer-review
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DNA evidence of bowhead whale exploitation by Greenlandic Paleo-Inuit 4,000 years ago
Research output: Contribution to journal › Journal article › Research › peer-review
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255
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A 5700 year-old human genome and oral microbiome from chewed birch pitch
Research output: Contribution to journal › Journal article › Research › peer-review
Published