Rasmus Nielsen
Professor
Section for Geogenetics
Øster Voldgade 5-7, 1350 København K
Section for Geogenetics
Øster Voldgade 5-7
1350 København K
The lengths of admixture tracts
Liang, M. & Nielsen, Rasmus, 2014, In: Genetics. 197, 3, p. 953-967 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating the timing of multiple admixture events using 3-locus linkage disequilibrium
Liang, M., Shishkin, M., Mikhailova, A., Shchur, V. & Nielsen, Rasmus, 2022, In: PLOS Genetics. 18, 7, 17 p., e1010281.Research output: Contribution to journal › Journal article › Research › peer-review
Q A: Who is H. sapiens really, and how do we know?
Liang, M. & Nielsen, Rasmus, 31 Mar 2011, In: B M C Biology. 9Research output: Contribution to journal › Journal article › Research › peer-review
A Bayesian Framework for Inferring the Influence of Sequence Context on Point Mutations
Ling, G., Miller, D., Nielsen, Rasmus & Stern, A., 2020, In: Molecular Biology and Evolution. 37, 3, p. 893-903 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears
Liu, S., Lorenzen, E., Fumagalli, M., Li, B., Harris, K., Xiong, Z., Zhou, L., Korneliussen, T. S., Somel, M., Babbitt, C., Wray, G., Li, J., He, W., Wang, Z., Fu, W., Xiang, X., Morgan, C. C., Doherty, A., O'Connell, M. J., McInerney, J. O. & 9 others, , 2014, In: Cell. 157, 4, p. 785-794 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic Analyses from Non-invasive Prenatal Testing Reveal Genetic Associations, Patterns of Viral Infections, and Chinese Population History
Liu, S., Huang, S., Chen, F., Zhao, L., Yuan, Y., Francis, S. S., Fang, L., Li, Z., Lin, L., Liu, R., Zhang, Y., Xu, H., Li, S., Zhou, Y., Davies, R. W., Liu, Q., Walters, R. G., Lin, K., Ju, J., Komeliussen, T. & 18 others, , 2018, In: Cell. 175, 2, p. 347-359, e1-e7Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Predicting Egg Passage Adaptations to Design Better Vaccines for the H3N2 Influenza Virus
Liu, Y., Chen, H., Duan, W., Zhang, X., He, X., Nielsen, Rasmus, Ma, L. & Zhai, W., 2022, In: Viruses. 14, 9, 16 p., 2065.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Proportionally more deleterious genetic variation in European than in African populations
Lohmueller, K. E., Indap, A. R., Schmidt, S., Boyko, A. R., Hernandez, R. D., Hubisz, M. J., Sninsky, J. J., White, T. J., Sunyaev, S. R., Nielsen, Rasmus, Clark, A. G. & Bustamante, C. D., 2008, In: Nature. 451, 7181, p. 994-7 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Natural selection affects multiple aspects of genetic variation at putatively peutral sites across the human genome
Lohmueller, K. E., Albrechtsen, Anders, Li, Y., Kim, S. Y., Korneliussen, Thorfinn Sand, Vinckenbosch, N., Tian, G., Huerta-Sanchez, E., Feder, A. F., Grarup, Niels, Jørgensen, T., Jiang, T., Witte, D. R., Sandbæk, A., Hellmann, I., Lauritzen, T., Hansen, Torben, Pedersen, Oluf Borbye, Wang, J. & Nielsen, Rasmus, 2011, In: P L o S Genetics. 7, 10, 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Whole-exome sequencing of 2,000 Danish individuals and the role of rare coding variants in type 2 diabetes
Lohmueller, K. E., Sparsø, T. H., Li, Q., Galijatovic, E. A. A., Korneliussen, T. S., Albrechtsen, A., Banasik, K., Grarup, N., Hallgrimsdottir, I., Kiil, K., Oskari Kilpeläinen, T., Krarup, N. T., Pers, T. H., Sanchez, G., Hu, Y., DeGiorgio, M., Jørgensen, T., Sandbæk, A., Lauritzen, T., Brunak, S. & 6 others, , 5 Dec 2013, In: American Journal of Human Genetics. 93, 6, p. 1072-1086 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Species-specific responses of Late Quaternary megafauna to climate and humans
Lorenzen, E., Nogues, D. B., Orlando, L. A. A., Weinstock Arenovitz, J., Binladen, J. K. M. A., Marske, K. A., Ugan, A., Borregaard, M. K., Gilbert, M. T. P., Nielsen, R., Ho, S. Y. W., Goebel, T., Graf, K. E., Byers, D., Stenderup, J., Rasmussen, M., Campos, P., Leonard, J. A., Koepfli, K-P., Froese, D. & 35 others, , 2011, In: Nature. 479, 7373, p. 359-364 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evidence for a Na+/Ca2+ exchange mechanism in frog skin epithelium
Madsen, K. H., Larsen, Birger Brodin & Nielsen, Rasmus, 1999, In: Pflügers Archiv - European Journal of Physiology. 437, 2, p. 175-81 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
No statistical evidence for an effect of CCR5-∆32 on lifespan in the UK Biobank cohort
Maier, R., Akbari, A., Wei, X., Patterson, N., Nielsen, Rasmus & Reich, D., 2020, In: Nature Medicine. 26, 2, p. 178-180 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A genomic history of aboriginal Australia
Malaspinas, A. S., Westaway, M. C., Muller, C. E., Sousa, V. C., Lao, O., Alves, I., Bergström, A., Athanasiadis, G., Cheng, J. Y., Crawford, J. E., Heupink, T. H., Macholdt, E., Peischl, S., Rasmussen, S., Schiffels, S., Subramanian, S., Wright, J. L., Albrechtsen, A., Barbieri, C., Dupanloup, I. & 55 others, , 2016, In: Nature. 538, 7624, p. 207-214 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS)
Malaspinas, A. S., Tange, O., Moreno Mayar, J. Víctor, Rasmussen, M., DiGiorgio, M., Wang, Y., Valdiosera Morales, C. E., Politis, G., Willerslev, Eske & Nielsen, Rasmus, 2014, In: Bioinformatics. 30, 20, p. 2962-2964 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil
Malaspinas, A. S., Lao, O., Schroeder, H., Rasmussen, M., Raghavan, M., Moltke, I., Campos, P., Sagredo, F. S., Rasmussen, S., Gonçalves, V. F., Albrechtsen, A., Allentoft, M. E., Johnson, P. L. F., Li, M., Reis, S., Bernardo, D. V., DeGiorgio, M., Duggan, A. T., Bastos, M., Wang, Y. & 20 others, , 2014, In: Current biology : CB. 24, 21, p. R1035-R1037 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Population genomics of the Viking world: [incl. correction]
Margaryan, A., Lawson, D. J., Sikora, M., Racimo, F., Rasmussen, S., Moltke, I., Cassidy, L. M., Jørsboe, E., Ingason, A., Pedersen, M. W., Korneliussen, T., Wilhelmson, H., Buś, M. M., de Barros Damgaard, P., Martiniano, R., Renaud, G., Bhérer, C., Moreno-Mayar, J. V., Fotakis, A. K., Allen, M. & 30 others, , 2020, In: Nature. 585, 7825, p. 390-396 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A likelihood ratio test for species membership based on DNA sequence data
Matz, M. V. & Nielsen, Rasmus, 2005, In: Philosophical Transactions of the Royal Society of London. Biological Sciences. 360, 1462, p. 1969-1974Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating the timing of multiple admixture pulses during local ancestry inference
Medina, P., Thornlow, B., Nielsen, Rasmus & Corbett-Detig, R., 2018, In: Genetics. 210, 3, p. 1089-1107 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
The CALeDNA program: Citizen scientists and researchers inventory California's biodiversity
Meyer, R. S., Ramos, M. M., Lin, M., Schweizer, T. M., Gold, Z., Ramos, D. R., Shirazi, S., Kandlikar, G., Kwan, W. Y., Curd, E. E., Freise, A., Parker, J. M., Sexton, J. P., Wetzer, R., Pentcheff, N. D., Wall, A. R., Pipes, L., Garcia- Vedrenne, A., Mejia, M. P., Moore, T. & 12 others, , 2021, In: California Agriculture. 75, 1, p. 20-32 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Uncovering the genetic history of the present-day greenlandic population
Moltke, Ida, Fumagalli, M., Korneliussen, Thorfinn Sand, Crawford, J. E., Bjerregaard, P., Jørgensen, M. E., Grarup, Niels, Gulløv, H. C., Linneberg, Allan René, Pedersen, Oluf Borbye, Hansen, Torben, Nielsen, Rasmus & Albrechtsen, Anders, 2015, In: American Journal of Human Genetics. 96, 1, p. 54-69 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A method for detecting IBD regions simultaneously in multiple individuals--with applications to disease genetics
Moltke, Ida, Albrechtsen, Anders, Hansen, Thomas van Overeem, Nielsen, Finn Cilius & Nielsen, Rasmus, 2011, In: Genome Research. 21, 7, p. 1168-80 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
A genome-wide scan for signatures of directional selection in domesticated pigs
Moon, S., Kim, T. H., Lee, K. T., Kwak, W., Lee, T., Lee, S. W., Kim, M. J., Cho, K., Kim, N., Chung, W. H., Sung, S., Park, T., Cho, S., Groenen, M. A. M., Nielsen, Rasmus, Kim, Y. & Kim, H., 25 Feb 2015, In: BMC Genomics. 16, 1, 130.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans
Moreno Mayar, J. Víctor, Potter, B. A., Vinner, Lasse, Steinrucken, M., Rasmussen, Simon, Terhorst, J., Kamm, J. A., Albrechtsen, Anders, Malaspinas, A., Sikora, Martin, Reuther, J. D., Irish, J. D., Malhi, R. S., Orlando, L. A. A., Song, Y. S., Nielsen, Rasmus, Meltzer, D. J. & Willerslev, Eske, 2018, In: Nature Genetics. 553, 7687, p. 203-207 5 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data
Moreno-Mayar, J. V., Korneliussen, Thorfinn Sand, Dalal, J., Renaud, Gabriel, Albrechtsen, Anders, Nielsen, Rasmus & Malaspinas, A., 2020, In: Bioinformatics. 36, 3, p. 828-841 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Early human dispersals within the Americas
Moreno-Mayar, J. V., Vinner, L., de Barros Damgaard, P., de la Fuente, C., Allentoft, M. E., Vimala, T., Racimo, F., Rasmussen, S., Margaryan, A., Iraeta Orbegozo, M., Mylopotamitaki, D., Alexandersen, V., Primeau, C., Gregersen, K., Hansen, K. L., Lynnerup, N., Kjær, K., Schroeder, H., Malaspinas, A. S., Sikora, M. & 2 others, , 7 Dec 2018, In: Science (New York, N.Y.). 362, 6419, p. 1, 1-11 12 p., eaav2621.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide Ancestry Patterns in Rapanui Suggest Pre-European Admixture with Native Americans
Moreno Mayar, J. Víctor, Rasmussen, Simon, Seguin-Orlando, A., Rasmussen, M., Liang, M., Flåm, S. T., Lie, B. A., Gilfillan, G. D., Nielsen, Rasmus, Thorsby, E., Willerslev, Eske & Malaspinas, A., 2014, In: Current Biology. 24, 21, p. 2518-2525Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Divergence, gene flow, and the origin of leapfrog geographic distributions: The history of colour pattern variation in Phyllobates poison-dart frogs
Márquez, R., Linderoth, T. P., Mejia-Vargas, D., Nielsen, Rasmus, Amezquita, A. & Kronforst, M. R., 2020, In: Molecular Ecology. 29, 19, p. 3702-3719 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
REDUCING AN INTELLECTUAL DEFICIT: COALESCENT THEORY FOR (ALMOST) EVERYONE
Nielsen, Rasmus, 2006, In: Evolution. 60, 1, p. 208-209Research output: Contribution to journal › Review › Research
- Published
Statistical Approaches for DNA Barcoding
Nielsen, Rasmus & Matz, M., 2006, In: Systematic Biology. 55, 1, p. 162-169Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Recent and ongoing selection in the human genome
Nielsen, Rasmus, Hellmann, I., Hubisz, M., Bustamante, C. & Clark, A. G., 2007, In: Nature Reviews. Genetics. 8, 11, p. 857-68 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genotype and SNP calling from next-generation sequencing data
Nielsen, Rasmus, Paul, J. S., Albrechtsen, Anders & Song, Y. S., 2011, In: Nature Reviews. Genetics. 12, 6, p. 443-451 9 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Comparative genomics: Difference of expression
Nielsen, Rasmus, 2006, In: Nature. 440, 7081, p. 161-161Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detecting selection needs comparative data
Nielsen, Rasmus & Hubisz, M. J., 2005, In: Nature. 433, 7023, p. E6Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Tracing the peopling of the world through genomics
Nielsen, Rasmus, Akey, J. M., Jakobsson, M., Pritchard, J. K., Tishkoff, S. & Willerslev, Eske, 19 Jan 2017, In: Nature. 541, 7637, p. 302-310 9 p.Research output: Contribution to journal › Review › Research › peer-review
Changes in ds/dn in the HIV-1 env Gene
Nielsen, Rasmus, 1999, In: MOLECULAR BIOLOGY AND EVOLUTION . 16, 5, p. 711-714 4 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Modern population genetics and race
Nielsen, Rasmus, 2022, Remapping Race in a Global Context. Lorusso, L. & Winther, R. G. (eds.). Routledge, p. 157-163 7 p. (History and Philosophy of Biology).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Darwinian and demographic forces affecting human protein coding genes.
Nielsen, Rasmus, Hubisz, M. J., Hellmann, I., Torgerson, D., Andres, A. M., Albrechtsen, Anders, Gutenkunst, R., Adams, M. D., Cargill, M., Boyko, A., Indap, A., Bustamante, C. D. & Clark, A. G., 2009, In: Genome Research. 19, 5, p. 838-49 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Maximum likelihood estimation of ancestral codon usage bias parameters in Drosophila
Nielsen, Rasmus, Bauer DuMont, V. L., Hubisz, M. J. & Aquadro, C. F., 2007, In: Molecular Biology and Evolution. 24, 1, p. 228-35 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular Signatures of Natural Selection
Nielsen, Rasmus, 2005, In: Annual Review of Genetics. 39, p. 197-218Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Statistical Methods in Molecular Evolution
Nielsen, Rasmus (ed.), 2005, New York: Springer. 508 p. (Statistics for Biology and Health).Research output: Book/Report › Book › Research › peer-review
- Published
Disclosure of variation
Nielsen, Rasmus, 2005, In: Nature. 434, 7031, p. 288-289Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A Scan for Positively Selected Genes in the Genomes of Humans and Chimpanzees
Nielsen, Rasmus, Bustamente, C., Clark, A. G., Glanowski, S., Sackton, T. B., Hubisz, M. J., Fledel-Alon, A., Tanenbaum, D. M., Civello, D., White, T. J., Sninsky, J. J., Adams, M. D. & Cargill, M., 2005, In: PLoS - Biology. 3, 6, p. e170Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Statistical inferences in phylogeography
Nielsen, Rasmus & Beaumont, M. A., 2009, In: Molecular Ecology. 18, 6, p. 1034-47 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
Nielsen, Rasmus & Yang, Z., 1 Mar 1998, In: Genetics. 148, 3, p. 929-936 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mapping Mutations on Phylogenies
Nielsen, Rasmus, 2005, Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics. Dunn, M. J., Jorde, L. B., Little, P. F. R. & Subramaniam, S. (eds.). WileyResearch output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
Robustness of the Estimator of the Index of Dispersion for DNA Sequences
Nielsen, Rasmus, 1 Jun 1997, In: Molecular Phylogenetics and Evolution. 7, 3, p. 346-351 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
Maximum-likelihood estimation of population divergence times and population phylogeny in models without mutation
Nielsen, Rasmus, Mountain, J. L., Huelsenbeck, J. P. & Slatkin, M., 1 Jan 1998, In: Evolution. 52, 3, p. 669-677 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Why Sex?
Nielsen, Rasmus, 2006, In: Science. 311, 5763, p. 960-961Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fumio Tajima and the origin of modern population genetics
Nielsen, Rasmus, 2016, In: Genetics. 204, 2, p. 389-390 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
Site-by-site estimation of the rate of substitution and the correlation of rates in mitochondrial DNA
Nielsen, Rasmus, 1 Jan 1997, In: Systematic Biology. 46, 2, p. 346-353 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Peopling the Americas
Nielsen, Rasmus, 2005, In: European Journal of Human Genetics. 13, 10, p. 1100-1101Research output: Contribution to journal › Comment/debate › Research
- Published
Adaptionism-30 years after Gould and Lewontin
Nielsen, Rasmus, 2009, In: Evolution. 63, 10, p. 2487-90 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
SNP calling, genotype calling, and sample allele frequency estimation from new-generation sequencing data
Nielsen, Rasmus, Korneliussen, Thorfinn Sand, Albrechtsen, Anders, Li, Y. & Wang, J., 2012, In: PLoS ONE. 7, 7, 11 p., e37558.Research output: Contribution to journal › Journal article › Research › peer-review
Distinguishing Migration From Isolation: A Markov Chain Monte Carlo Approach
Nielsen, Rasmus & Wakeley, J., 2001, In: Genetics. 158, 2, p. 885-896 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
Correcting for ascertainment biases when analyzing SNP data: applications to the estimation of linkage disequilibrium
Nielsen, Rasmus & Signorovitch, J., 2003, In: Theoretical Population Biology. 63, 3, p. 245-255 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single-Locus Tests of Microsatellite Evolution: Multi-Step Mutations and Constraints on Allele Size
Nielsen, Rasmus & Palsbøll, P. J., 1999, In: Molecular Phylogenetics and Evolution. 11, 3, p. 477-484 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
The molecular clock is gone but not forgotten: What about Molecular Clocks? Symposium at the Annual Meeting of the Society for the Study of Evolution (SSE), Madison, Wisconsin, USA, 22-26 June 1999
Nielsen, Rasmus, 1999, In: Trends in Genetics. 15, 11, p. 442-443 2 p.Research output: Contribution to journal › Conference article › Research › peer-review
- Published
Genomic scans for selective sweeps using SNP data
Nielsen, Rasmus, Williamson, S., Kim, Y., Hubisz, M. J., Clark, A. G. & Bustamente, C., 2005, In: Genome Research. 15, 11, p. 1566-1575Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bayesian inference of admixture graphs on Native American and Arctic populations
Nielsen, S. V., Vaughn, Andrew Howland, Leppälä, K., Landis, M. J., Mailund, T. & Nielsen, Rasmus, 2023, In: PLOS Genetics. 19, 2, 22 p., e1010410.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel Method To Identify Source-Associated Phylogenetic Clustering Shows that Listeria monocytogenes Includes Niche-Adapted Clonal Groups with Distinct Ecological Preferences
Nightingale, K. K., Lyles, K., Ayodele, M., Jalan, P., Nielsen, Rasmus & Wiedmann, M., 2006, In: Journal of Clinical Microbiology. 44, 10, p. 3742-3751Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial natural transformation by highly fragmented and damaged DNA
Overballe-Petersen, S., Harms, K., Orlando, L. A. A., Moreno Mayar, J. Víctor, Rasmussen, Simon, Dahl, Tais Wittchen, Rosing, Minik Thorleif, Poole, A. M., Sicheritz-Ponten, T., Brunak, S., Inselmann, S., de Vries, J., Wackernagel, W., Pybus, O. G., Nielsen, Rasmus, Johnsen, P. J., Nielsen, K. M. & Willerslev, Eske, 3 Dec 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 49, p. 19860–19865 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic analyses inform on migration events during the peopling of Eurasia
Pagani, L., Lawson, D. J., Jagoda, E., Moerseburg, A., Eriksson, A., Mitt, M., Clemente, F., Hudjashov, G., DeGiorgio, M., Saag, L., Wall, J. D., Cardona, A., Maegi, R., Sayres, M. A. W., Kaewert, S., Inchley, C., Scheib, C. L., Jaerve, M., Karmin, M., Jacobs, G. S. & 78 others, , 13 Oct 2016, In: Nature. 538, 7624, p. 238-242 5 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Radiation and speciation of pelagic organisms during periods of global warming: the case of the common minke whale, Balaenoptera acutorostrata
Pastene, L. A., Goto, M., Kanda, N., Zerbini, A. N., Kerem, D., Watanabe, K., Bessho, Y., Hasegawa, M., Nielsen, Rasmus, Larsen, F. & Palsbøll, P. J., 2007, In: Molecular Ecology. 16, 7, p. 1481-1495 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Postglacial viability and colonization in North America’s ice-free corridor
Pedersen, Mikkel Winther, Ruter, Anthony Henry, Schweger, C., Friebe, H., Staff, R. A., Kjeldsen, Kristian Kjellerup, Zepeda Mendoza, M. L., Beaudoin, A. B., Zutter, C., Larsen, Nicolaj Krog, Potter, B. A., Nielsen, Rasmus, Rainville, R. A., Orlando, L. A. A., Meltzer, D. J., Kjær, Kurt H. & Willerslev, Eske, 2016, In: Nature. 537, 7618, p. 45–49 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Inferring the ancestry of parents and grandparents from genetic data
Pei, J., Zhang, Y., Nielsen, Rasmus & Wu, Y., 2020, In: PLOS Computational Biology. 16, 8, 22 p., 1008065.Research output: Contribution to journal › Journal article › Research › peer-review
Distinguishing between Selective Sweeps from Standing Variation and from a De Novo Mutation
Peter, B. M., Huerta-Sanchez, E. & Nielsen, Rasmus, 2012, In: P L o S Genetics (Online). 8, 10, p. 1-14 14 p., e1003011.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genes under positive selection in Escherichia coli
Petersen, L., Bollback, J. P., Dimmic, M., Hubisz, M. & Nielsen, Rasmus, 2007, In: Genome Research. 17, 9, p. 1336-43 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating the relative proportions of SARS-CoV-2 haplotypes from wastewater samples
Pipes, L., Chen, Z., Afanaseva, S. & Nielsen, Rasmus, 2022, In: Cell Reports Methods. 2, 10, 100313.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
AncestralClust: clustering of divergent nucleotide sequences by ancestral sequence reconstruction using phylogenetic trees
Pipes, L. & Nielsen, Rasmus, 2022, In: Bioinformatics. 38, 3, p. 663-670 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Assessing Uncertainty in the Rooting of the SARS-CoV-2 Phylogeny
Pipes, L., Wang, H., Huelsenbeck, J. P. & Nielsen, Rasmus, 2021, In: Molecular Biology and Evolution. 38, 4, p. 1537-1543 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The impact of founder events on chromosomal variability in multiply mating species
Pool, J. E. & Nielsen, Rasmus, 2008, In: Molecular Biology and Evolution. 25, 8, p. 1728-36 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Population size changes reshape genomic patterns of diversity
Pool, J. E. & Nielsen, Rasmus, 2007, In: Evolution. 61, 12, p. 3001-6 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Inference of historical changes in migration rate from the lengths of migrant tracts
Pool, J. E. & Nielsen, Rasmus, 2009, In: Genetics. 181, 2, p. 711-9 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Human Disease Variation in the Light of Population Genomics
Prohaska, Ana, Racimo, Fernando, Schork, A. J., Sikora, Martin, Stern, A. J., Ilardo, M., Allentoft, Morten Erik, Folkersen, L., Buil, A., Moreno Mayar, J. Víctor, Korneliussen, Thorfinn Sand, Geschwind, D., Ingason, A., Werge, Thomas, Nielsen, Rasmus & Willerslev, Eske, 2019, In: Cell. 177, 1, p. 115-131 17 p.Research output: Contribution to journal › Review › Research › peer-review
Classic Selective Sweeps Revealed by Massive Sequencing in Cattle
Qanbari, S., Pausch, H., Jansen, S., Somel, M., Strom, T. M., Fries, R., Nielsen, Rasmus & Simianer, H., 2014, In: PLOS Genetics. 10, 2, 13 p., e1004148.Research output: Contribution to journal › Journal article › Research › peer-review
Evidence for archaic adaptive introgression in humans
Racimo, Fernando, Sankararaman, S., Nielsen, Rasmus & Huerta-Sánchez, E., 18 May 2015, In: Nature Reviews Genetics. 16, 6, p. 359-371 13 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Archaic adaptive introgression in TBX15/WARS2
Racimo, Fernando, Gokhman, D., Fumagalli, M., Ko, A., Hansen, Torben, Moltke, Ida, Albrechtsen, Anders, Carmel, L., Huerta-Sánchez, E. & Nielsen, Rasmus, 2017, In: Molecular Biology and Evolution. 34, 3, p. 509-524 16 p., msw283.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic evidence for the Pleistocene and recent population history of Native Americans
Raghavan, M., Steinrücken, M., Harris, K., Schiffels, S., Rasmussen, S., DeGiorgio, M., Albrechtsen, A., Valdiosera Morales, C. E., Avila Arcos, M. D. C., Malaspinas, A. S., Eriksson, A., Moltke, I., Metspalu, M., Homburger, J. R., Wall, J., Cornejo, O. E., Moreno Mayar, J. V., Korneliussen, T. S., Pierre, T. L., Rasmussen, M. & 81 others, , 2015, In: Science (New York, N.Y.). 349, 6250, 6250.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Correcting estimators of theta and Tajima's D for ascertainment biases caused by the single-nucleotide polymorphism discovery process
Ramírez-Soriano, A. & Nielsen, Rasmus, 2009, In: Genetics. 181, 2, p. 701-10 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Taxon sampling and the accuracy of large phylogenies
Rannala, B., Huelsenbeck, J. P., Yang, Z. & Nielsen, Rasmus, 1 Jan 1998, In: Systematic Biology. 47, 4, p. 702-710 9 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Emergence and Spread of Basal Lineages of Yersinia pestis during the Neolithic Decline
Rascovan, N., Sjogren, K., Kristiansen, K., Nielsen, Rasmus, Willerslev, Eske, Desnues, C. & Rasmussen, Simon, 2019, In: Cell. 176, 1-2, p. 295-305.e10Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An Aboriginal Australian genome reveals separate human dispersals into Asia
Rasmussen, M., Guo, X., Wang, Y., Lohmueller, K. E., Rasmussen, S., Albrechtsen, A., Skotte, L., Lindgreen, S., Metspalu, M., Jombart, T., Kivisild, T., Zhai, W., Eriksson, A., Manica, A., Orlando, L., De La Vega, F. M., Tridico, S., Metspalu, E., Nielsen, K., Avila Arcos, M. D. C. & 38 others, , 2011, In: Science. 334, 6052, p. 94-98 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ancient human genome sequence of an extinct Palaeo-Eskimo
Rasmussen, M., Li, Y., Lindgreen, S., Pedersen, J. S., Albrechtsen, A., Moltke, I., Metspalu, M., Metspalu, E., Kivisild, T., Gupta, R., Bertalan, M., Nielsen, K., Gilbert, T., Wang, Y., Raghavan, M., Campos, P., Kamp, H. L. M., Wilson, A. S., Gledhill, A., Tridico, S. & 32 others, , 11 Feb 2010, In: Nature. 463, 7282, p. 757-762 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The ancestry and affiliations of Kennewick Man
Rasmussen, M., Sikora, Martin, Albrechtsen, Anders, Korneliussen, Thorfinn Sand, Moreno Mayar, J. Víctor, Poznik, G. D., Zollikofer, C. P. E., Ponce de León, M. S., Allentoft, Morten Erik, Moltke, Ida, Jónsson, H., Valdiosera Morales, C. E., Malhi, R. S., Orlando, L. A. A., Bustamante, C. D., Stafford jr., T., Meltzer, D. J., Nielsen, Rasmus & Willerslev, Eske, 2015, In: Nature. 523, 7561, p. 455-458 4 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Maternal age effect and severe germ-line bottleneck in the inheritance of human mitochondrial DNA
Rebolledo-Jaramillo, B., Su, M. S., Stoler, N., McElhoe, J. A., Dickins, B., Blankenberg, D., Korneliussen, Thorfinn Sand, Chiaromonte, F., Nielsen, Rasmus, Holland, M. M., Paul, I. M., Nekrutenko, A. & Makova, K. D., 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 43, p. 15474-15479 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution
Richards, S., Liu, Y., Bettencourt, B. R., Hradecky, P., Letovsky, S., Nielsen, Rasmus & et al., 2005, In: Genome Research. 15, 1, p. 1-18Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Life in Deserts: The Genetic Basis of Mammalian Desert Adaptation
Rocha, J. L., Godinho, R., Brito, J. C. & Nielsen, Rasmus, 2021, In: Trends in Ecology & Evolution. 36, 7, p. 637-650Research output: Contribution to journal › Review › Research › peer-review
- Published
Convergent evolution of increased urine-concentrating ability in desert mammals
Rocha, J. L., Brito, J. C., Nielsen, Rasmus & Godinho, R., 2021, In: Mammal Review. 51, 4, p. 482-491 10 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
The origin and evolution of maize in the Southwestern United States: [+ erratum]
Rodrigues da Fonseca, Rute Andreia, Smith, B. D., Wales, N., Cappellini, Enrico, Skoglund, P., Fumagalli, M., Samaniego Castruita, J. A., Carøe, C., Avila Arcos, M. D. C., Hufnagel, D. E., Korneliussen, Thorfinn Sand, Vieira, Filipe Garrett, Jakobsson, M., Arriaza, B., Willerslev, Eske, Nielsen, Rasmus, Hufford, M. B., Albrechtsen, Anders, Ross-Ibarra, J. & Gilbert, M Thomas P, 2015, In: Nature Plants. 1, 5 p., 14003.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Positive selection on apoptosis related genes
Rodrigues da Fonseca, Rute Andreia, Kosiol, C., Vinař, T., Siepel, A. & Nielsen, Rasmus, 2010, In: FEBS Letters. 584, 3, p. 469-476 8 p.Research output: Contribution to journal › Review › Research › peer-review
Modeling gene expression evolution with an extended ornstein-uhlenbeck process accounting for within-species variation
Rohlfs, R. V., Harrigan, P. & Nielsen, Rasmus, 2014, In: Molecular Biology and Evolution. 31, 1, p. 201-211 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Fitting the Balding-Nichols model to forensic databases
Rohlfs, R. V., Aguiar, V. R. C., Lohmueller, K. E., Castro, A. M., Ferreira, A. C. S., Almeida, V. C. O., Louro, I. D. & Nielsen, Rasmus, 16 Jul 2015, In: Forensic Science International: Genetics. 19, p. 86-91 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phylogenetic ANOVA: the expression variance and evolution model for quantitative trait evolution
Rohlfs, R. V. & Nielsen, Rasmus, 2015, In: Systematic Biology. 64, 5, p. 695-708 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detecting Site-Specific Physicochemical Selective Pressures: Applications to the Class I HLA of the Human Major Histocompatibility Complex and the SRK of the Plant Sporophytic Self-Incompatibility System
Sainudiin, R., Wong, W. S. W., Yogeeswaran, K., Nasrallah, J. B., Yang, Z. & Nielsen, Rasmus, 2005, In: Journal of Molecular Evolution. 60, 3, p. 315-326Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Population Structure of African Cultivated Rice Oryza glaberrima (Steud.): Evidence for Elevated Levels of Linkage Disequilibrium Caused by Admixture with O. sativa and Ecological Adaptation
Semon, M., Nielsen, Rasmus, Jones, M. P. & McCouch, S. R., 2005, In: Genetics. 169, 3, p. 1639-1647Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Adaptive genic evolution in the Drosophila genomes
Shapiro, J. A., Huang, W., Zhang, C., Hubisz, M. J., Lu, J., Turissini, D. A., Fang, S., Wang, H., Hudson, R. R., Nielsen, Rasmus, Chen, Z. & Wu, C., 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 7, p. 2271-6 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
On the number of siblings and p-th cousins in a large population sample
Shchur, V. & Nielsen, Rasmus, 1 Nov 2018, In: Journal of Mathematical Biology. 77, 5, p. 1279-1298Research output: Contribution to journal › Journal article › Research › peer-review
- Published
On the Distribution of Tract Lengths During Adaptive Introgression
Shchur, V., Svedberg, J., Medina, P., Corbett-Detig, R. & Nielsen, Rasmus, 2020, In: G3: Genes, Genomes, Genetics (Bethesda). 10, 10, p. 3663-3673 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The population history of northeastern Siberia since the Pleistocene
Sikora, M., Pitulko, V. V., Sousa, V. C., Allentoft, M. E., Vinner, L., Rasmussen, S., Margaryan, A., Damgaard, P. D. B., de la Fuente Castro, C., Renaud, G., Yang, M. A., Fu, Q., Dupanloup, I., Giampoudakis, K., Nogues, D. B., Rahbek, C., Kroonen, G., Peyrot, M., McColl, H., Vasilyev, S. V. & 27 others, , 2019, In: Nature. 570, p. 182–188Research output: Contribution to journal › Journal article › Research › peer-review
ID: 3311
Most downloads
-
5481
downloads
Natural selection affects multiple aspects of genetic variation at putatively peutral sites across the human genome
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
5235
downloads
Genetic architecture of vitamin B12 and folate levels uncovered applying deeply sequenced large datasets
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
3405
downloads
SNP calling, genotype calling, and sample allele frequency estimation from new-generation sequencing data
Research output: Contribution to journal › Journal article › Research › peer-review
Published