Rasmus Nielsen
Professor
Section for Geogenetics
Øster Voldgade 5-7, 1350 København K
Section for Geogenetics
Øster Voldgade 5-7
1350 København K
- 2005
- Published
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments
Wang, Y., van der Hoeven, R. S., Nielsen, Rasmus, Mueller, L. A. & Tanksley, S. D., 2005, In: Theoretical and Applied Genetics. 112, 1, p. 72-84Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution
Richards, S., Liu, Y., Bettencourt, B. R., Hradecky, P., Letovsky, S., Nielsen, Rasmus & et al., 2005, In: Genome Research. 15, 1, p. 1-18Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detecting Site-Specific Physicochemical Selective Pressures: Applications to the Class I HLA of the Human Major Histocompatibility Complex and the SRK of the Plant Sporophytic Self-Incompatibility System
Sainudiin, R., Wong, W. S. W., Yogeeswaran, K., Nasrallah, J. B., Yang, Z. & Nielsen, Rasmus, 2005, In: Journal of Molecular Evolution. 60, 3, p. 315-326Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detecting coevolving amino acid sites using Bayesian mutational mapping
Dimmic, M. W., Hubisz, M. J., Bustamente, C. D. & Nielsen, Rasmus, 2005, In: Bioinformatics. 21, 1, p. i126-i135Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detecting selection needs comparative data
Nielsen, Rasmus & Hubisz, M. J., 2005, In: Nature. 433, 7023, p. E6Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Disclosure of variation
Nielsen, Rasmus, 2005, In: Nature. 434, 7031, p. 288-289Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evaluation of an Improved Branch-Site Likelihood Method for Detecting Positive Selection at the Molecular Level
Zhang, J., Nielsen, Rasmus & Yang, Z., 2005, In: Molecular Biology and Evolution. 22, 12, p. 2472-2479Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic scans for selective sweeps using SNP data
Nielsen, Rasmus, Williamson, S., Kim, Y., Hubisz, M. J., Clark, A. G. & Bustamente, C., 2005, In: Genome Research. 15, 11, p. 1566-1575Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mapping Mutations on Phylogenies
Nielsen, Rasmus, 2005, Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics. Dunn, M. J., Jorde, L. B., Little, P. F. R. & Subramaniam, S. (eds.). WileyResearch output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- Published
Molecular Signatures of Natural Selection
Nielsen, Rasmus, 2005, In: Annual Review of Genetics. 39, p. 197-218Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Natural selection on protein-coding genes in the human genome
Bustamente, C. D., Fledel-Alon, A., Williamson, S., Nielsen, Rasmus, Hubisz, M., Glanowski, S., Tanenbaum, D. M., White, T. J., Sninsky, J. J., Hernandez, R. D., Civello, D., Adams, M. D., Cargill, M. & Clark, A. G., 2005, In: Nature. 437, 7062, p. 1153-1157Research output: Contribution to journal › Letter › Research
- Published
Peopling the Americas
Nielsen, Rasmus, 2005, In: European Journal of Human Genetics. 13, 10, p. 1100-1101Research output: Contribution to journal › Comment/debate › Research
- Published
Simultaneous inference of selection and population growth from patterns of variation in the human genome
Williamson, S. H., Hernandez, R., Fledel-Alon, A., Zhu, L., Nielsen, Rasmus & Bustamente, C. D., 2005, In: Proceedings of the National Academy of Science of the United States of America. 102, 22, p. 7882-7887Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Statistical Methods in Molecular Evolution
Nielsen, Rasmus (ed.), 2005, New York: Springer. 508 p. (Statistics for Biology and Health).Research output: Book/Report › Book › Research › peer-review
- Published
The Population Structure of African Cultivated Rice Oryza glaberrima (Steud.): Evidence for Elevated Levels of Linkage Disequilibrium Caused by Admixture with O. sativa and Ecological Adaptation
Semon, M., Nielsen, Rasmus, Jones, M. P. & McCouch, S. R., 2005, In: Genetics. 169, 3, p. 1639-1647Research output: Contribution to journal › Journal article › Research › peer-review
- 2006
- Published
Comparative genomics: Difference of expression
Nielsen, Rasmus, 2006, In: Nature. 440, 7081, p. 161-161Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CpG + CpNpG Analysis of Protein-Coding Sequences from Tomato
Hobolth, A., Nielsen, Rasmus, Wang, Y., Wu, F. & Tanksley, S. D., 2006, In: Molecular Biology and Evolution. 23, 6, p. 1318-1323Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of physicochemical selective pressure on protein encoding nucleotide sequences
Wong, W. S. W., Sainudiin, R. & Nielsen, Rasmus, 2006, In: BMC Bioinformatics. 7, 10 p., 148.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel Method To Identify Source-Associated Phylogenetic Clustering Shows that Listeria monocytogenes Includes Niche-Adapted Clonal Groups with Distinct Ecological Preferences
Nightingale, K. K., Lyles, K., Ayodele, M., Jalan, P., Nielsen, Rasmus & Wiedmann, M., 2006, In: Journal of Clinical Microbiology. 44, 10, p. 3742-3751Research output: Contribution to journal › Journal article › Research › peer-review
- Published
REDUCING AN INTELLECTUAL DEFICIT: COALESCENT THEORY FOR (ALMOST) EVERYONE
Nielsen, Rasmus, 2006, In: Evolution. 60, 1, p. 208-209Research output: Contribution to journal › Review › Research
- Published
Statistical Approaches for DNA Barcoding
Nielsen, Rasmus & Matz, M., 2006, In: Systematic Biology. 55, 1, p. 162-169Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Why Sex?
Nielsen, Rasmus, 2006, In: Science. 311, 5763, p. 960-961Research output: Contribution to journal › Journal article › Research › peer-review
- 2007
- Published
A Bayesian multilocus association method: allowing for higher-order interaction in association studies
Albrechtsen, Anders, Castella, S., Andersen, G., Hansen, T., Pedersen, O. & Nielsen, Rasmus, 2007, In: Genetics. 176, 2, p. 1197-208 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Adaptive genic evolution in the Drosophila genomes
Shapiro, J. A., Huang, W., Zhang, C., Hubisz, M. J., Lu, J., Turissini, D. A., Fang, S., Wang, H., Hudson, R. R., Nielsen, Rasmus, Chen, Z. & Wu, C., 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 7, p. 2271-6 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ancient bacteria show evidence of DNA repair.
Johnson, S. S., Hebsgaard, M. B., Christensen, T. R., Mastepanov, M., Nielsen, Rasmus, Munch, K., Brand, T., Gilbert, M Thomas P, Zuber, M. T., Bunce, M., Rønn, Regin, Gilichinsky, D., Froese, D. & Willerslev, Eske, 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 36, p. 14401-5 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 3311
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Natural selection affects multiple aspects of genetic variation at putatively peutral sites across the human genome
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Genetic architecture of vitamin B12 and folate levels uncovered applying deeply sequenced large datasets
Research output: Contribution to journal › Journal article › Research › peer-review
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SNP calling, genotype calling, and sample allele frequency estimation from new-generation sequencing data
Research output: Contribution to journal › Journal article › Research › peer-review
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