Rasmus Nielsen

Rasmus Nielsen

Professor

ORCID: 0000-0003-0513-6591

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  1. Published

    An increase in [Ca2+]i activates basolateral chloride channels and inhibits apical sodium channels in frog skin epithelium

    Larsen, Birger Brodin, Rytved, K. A. & Nielsen, Rasmus, 1996, In: Pflügers Archiv - European Journal of Physiology. 433, 1-2, p. 16-25 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    An investigation of the statistical power of neutrality tests based on comparative and population genetic data

    Zhai, W., Nielsen, Rasmus & Slatkin, M., 2009, In: Molecular Biology and Evolution. 26, 2, p. 273-83 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    AncestralClust: clustering of divergent nucleotide sequences by ancestral sequence reconstruction using phylogenetic trees

    Pipes, L. & Nielsen, Rasmus, 2022, In: Bioinformatics. 38, 3, p. 663-670 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Ancient DNA reveals late survival of mammoth and horse in interior Alaska

    Haile, James Seymour, Froese, D. G., Macphee, R. D. E., Roberts, R. G., Arnold, L. J., Reyes, A. V., Rasmussen, M., Nielsen, Rasmus, Brook, B. W., Robinson, S., Demuro, M., Gilbert, M Thomas P, Munch, K., Austin, J. J., Cooper, A., Barnes, I., Möller, P. & Willerslev, Eske, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 52, p. 22352-7 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Ancient Hybridization with an Unknown Population Facilitated High-Altitude Adaptation of Canids

    Wang, M., Wang, S., Li, Y., Jhala, Y., Thakur, M., Otecko, N. O., Si, J., Chen, H., Shapiro, B., Nielsen, Rasmus, Zhang, Y., Wu, D. & Parsch, J. (ed.), 2020, In: MOLECULAR BIOLOGY AND EVOLUTION . 37, 9, p. 2616-2629

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Ancient bacteria show evidence of DNA repair.

    Johnson, S. S., Hebsgaard, M. B., Christensen, T. R., Mastepanov, M., Nielsen, Rasmus, Munch, K., Brand, T., Gilbert, M Thomas P, Zuber, M. T., Bunce, M., Rønn, Regin, Gilichinsky, D., Froese, D. & Willerslev, Eske, 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 36, p. 14401-5 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Ancient biomolecules from deep ice cores reveal a forested southern Greenland.

    Willerslev, E., Cappellini, E., Boomsma, W. K., Nielsen, R., Hebsgaard, M. B., Brand, T. B., Hofreiter, M., Bunce, M., Poinar, H. N., Dahl-Jensen, D., Johnsen, S. J., Steffensen, J. P., Bennike, O., Schwenninger, J-L., Nathan, R., Armitage, S., de Hoog, C-J., Alfimov, V., Christl, M., Beer, J. & 10 others, Muscheler, R., Barker, J., Sharp, M., Penkman, K. E. H., Haile, J., Taberlet, P., Gilbert, M Thomas P, Casoli, A., Campani, E. & Collins, M. J., 2007, In: Science. 317, 5834, p. 111-114 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers

    Sikora, M., Seguin-Orlando, A., Sousa, V. C., Albrechtsen, A., Korneliussen, T. S., Ko, A., Rasmussen, S., Dupanloup, I., Nigst, P. R., Bosch, M. D., Renaud, G., Allentoft, M. E., Margaryan, A., Vasilyev, S. V., Veselovskaya, E. V., Borutskaya, S. B., Deviese, T., Comeskey, D., Higham, T., Manica, A. & 7 others, Foley, R., Meltzer, D. J., Nielsen, Rasmus, Excoffler, L., Lahr, M. M., Orlando, L. A. A. & Willerslev, Eske, 3 Nov 2017, In: Science. 358, 6363, p. 659-662 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Ancient human genome sequence of an extinct Palaeo-Eskimo

    Rasmussen, M., Li, Y., Lindgreen, S., Pedersen, J. S., Albrechtsen, A., Moltke, I., Metspalu, M., Metspalu, E., Kivisild, T., Gupta, R., Bertalan, M., Nielsen, K., Gilbert, T., Wang, Y., Raghavan, M., Campos, P., Kamp, H. L. M., Wilson, A. S., Gledhill, A., Tridico, S. & 32 others, Bunce, M., Lorenzen, Eline, Binladen, J. K. M. A., Guo, X., Zhao, J., Zhang, X., Zhang, H., Li, Z., Chen, M., Orlando, L. A. A., Kristiansen, Karsten, Bak, M., Tommerup, Niels, Bendixen, C., Pierre, T. L., Grønnow, B., Meldgaard, Morten, Andreasen, C., Fedorova, S. A., Osipova, L. P., Higham, T. F. G., Ramsey, C. B., Hansen, Thomas van Overeem, Nielsen, Finn Cilius, Crawford, M. H., Brunak, Søren, Sicheritz-Pontén, T., Villems, R., Nielsen, Rasmus, Krogh, Anders, Wang, J. & Willerslev, Eske, 11 Feb 2010, In: Nature. 463, 7282, p. 757-762 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Archaic adaptive introgression in TBX15/WARS2

    Racimo, Fernando, Gokhman, D., Fumagalli, M., Ko, A., Hansen, Torben, Moltke, Ida, Albrechtsen, Anders, Carmel, L., Huerta-Sánchez, E. & Nielsen, Rasmus, 2017, In: Molecular Biology and Evolution. 34, 3, p. 509-524 16 p., msw283.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Ascertainment bias in studies of human genome-wide polymorphism

    Clark, A. G., Hubisz, M. J., Bustamente, C. D., Williamson, S. H. & Nielsen, Rasmus, 2005, In: Genome Research. 15, 11, p. 1496-1502

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Assessing Uncertainty in the Rooting of the SARS-CoV-2 Phylogeny

    Pipes, L., Wang, H., Huelsenbeck, J. P. & Nielsen, Rasmus, 2021, In: Molecular Biology and Evolution. 38, 4, p. 1537-1543 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Assessing the evolutionary impact of amino acid mutations in the human genome

    Boyko, A. R., Williamson, S. H., Indap, A. R., Degenhardt, J. D., Hernandez, R. D., Lohmueller, K. E., Adams, M. D., Schmidt, S., Sninsky, J. J., Sunyaev, S. R., White, T. J., Nielsen, Rasmus, Clark, A. G. & Bustamante, C. D., 2008, In: PLoS Genetics. 4, 5, p. e1000083

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Association mapping for compound heterozygous traits using phenotypic distance and integer programming

    Gusfield, D. & Nielsen, Rasmus, 1 Jan 2015, Algorithms in Bioinformatics - 15th International Workshop, WABI 2015, Proceedings. Pop, M. & Touzet, H. (eds.). Springer Verlag, p. 136-147 12 p. A1. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 9289).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  15. Published

    Bacterial natural transformation by highly fragmented and damaged DNA

    Overballe-Petersen, S., Harms, K., Orlando, L. A. A., Moreno Mayar, J. Víctor, Rasmussen, Simon, Dahl, Tais Wittchen, Rosing, Minik Thorleif, Poole, A. M., Sicheritz-Ponten, T., Brunak, S., Inselmann, S., de Vries, J., Wackernagel, W., Pybus, O. G., Nielsen, Rasmus, Johnsen, P. J., Nielsen, K. M. & Willerslev, Eske, 3 Dec 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 49, p. 19860–19865 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Balancing Selection Maintains a Form of ERAP2 that Undergoes Nonsense-Mediated Decay and Affects Antigen Presentation

    Andrés, A. M., Dennis, M. Y., Kretzschmar, W. W., Cannons, J. L., Lee-Lin, S., Hurle, B., Schwartzberg, P. L., Williamson, S. H., Bustamante, C. D., Nielsen, Rasmus, Clark, A. G. & Green, E. D., 2010, In: PLOS Genetics. 6, 10, 13 p., e1001157.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Bayes Empirical Bayes Inference of Amino Acid Sites Under Positive Selection

    Yang, Z., Wong, W. S. W. & Nielsen, Rasmus, 2005, In: Molecular Biology and Evolution. 22, 4, p. 1107-1118

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Bayesian and maximum likelihood estimation of genetic maps

    York, T. L., Durrett, R. T., Tanksley, S. & Nielsen, Rasmus, 2005, In: Genetics Research. 85, 2, p. 159-168

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Bayesian estimation of the number of inversions in the history of two chromosomes

    York, T. L., Durrett, R. & Nielsen, Rasmus, 1 Dec 2002, In: Journal of Computational Biology. 9, 6, p. 805-818 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Bayesian inference of admixture graphs on Native American and Arctic populations

    Nielsen, S. V., Vaughn, Andrew Howland, Leppälä, K., Landis, M. J., Mailund, T. & Nielsen, Rasmus, 2023, In: PLOS Genetics. 19, 2, 22 p., e1010410.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Bottleneck and selection in the germline and maternal age influence transmission of mitochondrial DNA in human pedigrees

    Zaidi, A. A., Wilton, P. R., Su, M. S., Paul, I. M., Arbeithuber, B., Anthony, K., Nekrutenko, A., Nielsen, Rasmus & Makova, K. D., 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 50, p. 25172-25178 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    CCR5-Delta 32 is deleterious in the homozygous state in humans

    Wei, X. & Nielsen, Rasmus, Jun 2019, In: Nature Medicine. 25, 6, p. 909-910

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Calculation of Tajima's D and other neutrality test statistics from low depth next-generation sequencing data

    Korneliussen, Thorfinn Sand, Moltke, Ida, Albrechtsen, Anders & Nielsen, Rasmus, 2013, In: B M C Bioinformatics. 14, 14 p., 289.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Changes in ds/dn in the HIV-1 env Gene

    Nielsen, Rasmus, 1999, In: MOLECULAR BIOLOGY AND EVOLUTION . 16, 5, p. 711-714 4 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  25. Published

    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments

    Wang, Y., van der Hoeven, R. S., Nielsen, Rasmus, Mueller, L. A. & Tanksley, S. D., 2005, In: Theoretical and Applied Genetics. 112, 1, p. 72-84

    Research output: Contribution to journal › Journal article › Research › peer-review

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