Rasmus Nielsen

Rasmus Nielsen

Professor

ORCID: 0000-0003-0513-6591

Publication year:
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  1. 2015

  2. Association mapping for compound heterozygous traits using phenotypic distance and integer programming

    Gusfield, D. & Nielsen, Rasmus, 1 Jan 2015, Algorithms in Bioinformatics - 15th International Workshop, WABI 2015, Proceedings. Pop, M. & Touzet, H. (eds.). Springer Verlag, p. 136-147 12 p. A1. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 9289).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  3. Published

    A recent bottleneck of Y chromosome diversity coincides with a global change in culture

    Karmin, M., Saag, L., Vicente, M., Wilson Sayres, M. A., Järve, M., Talas, U. G., Rootsi, S., Ilumäe, A-M., Mägi, R., Mitt, M., Pagani, L., Puurand, T., Faltyskova, Z., Clemente, F., Cardona, A., Metspalu, E., Sahakyan, H., Yunusbayev, B., Hudjashov, G., DeGiorgio, M. & 80 others, Loogväli, E., Eichstaedt, C., Eelmets, M., Chaubey, G., Tambets, K., Litvinov, S., Mormina, M., Xue, Y., Ayub, Q., Zoraqi, G., Korneliussen, Thorfinn Sand, Akhatova, F., Lachance, J., Tishkoff, S., Momynaliev, K., Ricaut, F., Kusuma, P., Razafindrazaka, H., Pierron, D., Cox, M. P., Sultana, G. N. N., Willerslev, R., Muller, C., Westaway, M., Lambert, D., Skaro, V., Kovačevic, L., Turdikulova, S., Dalimova, D., Khusainova, R., Trofimova, N., Akhmetova, V., Khidiyatova, I., Lichman, D. V., Isakova, J., Pocheshkhova, E., Sabitov, Z., Barashkov, N. A., Nymadawa, P., Mihailov, E., Seng, J. W. T., Evseeva, I., Migliano, A. B., Abdullah, S., Andriadze, G., Primorac, D., Atramentova, L., Utevska, O., Yepiskoposyan, L., Marjanovic, D., Kushniarevich, A., Behar, D. M., Gilissen, C., Vissers, L., Veltman, J. A., Balanovska, E., Derenko, M., Malyarchuk, B., Metspalu, A., Fedorova, S., Eriksson, A., Manica, A., Mendez, F. L., Karafet, T. M., Veeramah, K. R., Bradman, N., Hammer, M. F., Osipova, L. P., Balanovsky, O., Khusnutdinova, E. K., Johnsen, K., Remm, M., Thomas, M. G., Tyler-Smith, C., Underhill, P. A., Willerslev, Eske, Nielsen, Rasmus, Metspalu, M., Villems, R. & Kivisild, T., 2015, In: Genome Research. 25, 4, p. 459-466 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Genomic evidence for the Pleistocene and recent population history of Native Americans

    Raghavan, M., Steinrücken, M., Harris, K., Schiffels, S., Rasmussen, S., DeGiorgio, M., Albrechtsen, A., Valdiosera Morales, C. E., Avila Arcos, M. D. C., Malaspinas, A. S., Eriksson, A., Moltke, I., Metspalu, M., Homburger, J. R., Wall, J., Cornejo, O. E., Moreno Mayar, J. V., Korneliussen, T. S., Pierre, T. L., Rasmussen, M. & 81 others, Campos, P., Damgaard, P. D. B., Allentoft, Morten Erik, Lindo, J., Metspalu, E., Rodríguez-Varela, R., Mansilla, J., Henrickson, C., Seguin-Orlando, A., Malmström, H., Stafford jr., T., Shringarpure, S. S., Moreno-Estrada, A., Karmin, M., Tambets, K., Bergström, A., Xue, Y., Warmuth, V., Friend, A. D., Singarayer, J., Valdes, P., Balloux, F., Leboreiro, I., Vera, J. L., Rangel-Villalobos, H., Pettener, D., Luiselli, D., Davis, L. G., Heyer, E., Zollikofer, C. P. E., Ponce de León, M. S., Smith, C. I., Grimes, V., Pike, K., Deal, M., Fuller, B. T., Arriaza, B., Standen, V., Luz, M. F., Ricaut, F., Guidon, N., Osipova, L., Voevoda, M. I., Posukh, O. L., Balanovsky, O., Lavryashina, M., Bogunov, Y., Khusnutdinova, E., Gubina, M., Balanovska, E., Fedorova, S., Litvinov, S., Malyarchuk, B., Derenko, M., Mosher, M. J., Archer, D., Cybulski, J., Petzelt, B., Mitchell, J., Worl, R., Norman, P. J., Parham, P., Kemp, B. M., Kivisild, T., Tyler-Smith, C., Sandhu, M. S., Crawford, M., Villems, R., Smith, D. G., Waters, M. R., Goebel, T., Johnson, J. R., Malhi, R. S., Jakobsson, M., Meltzer, D. J., Manica, A., Durbin, R., Bustamante, C. D., Song, Y. S., Nielsen, Rasmus & Willerslev, Eske, 2015, In: Science (New York, N.Y.). 349, 6250, 6250.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Greenlandic Inuit show genetic signatures of diet and climate adaptation

    Fumagalli, M., Moltke, Ida, Grarup, Niels, Racimo, F., Bjerregaard, P., Jørgensen, M. E., Korneliussen, Thorfinn Sand, Gerbault, P., Skotte, L., Linneberg, Allan René, Christensen, C., Brandslund, I., Jørgensen, T., Huerta-Sánchez, E., Schmidt, E. B., Pedersen, Oluf Borbye, Hansen, T., Albrechtsen, Anders & Nielsen, Rasmus, 2015, In: Science (New York, N.Y.). 349, 6254, p. 1343-1347 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Phylogenetic ANOVA: the expression variance and evolution model for quantitative trait evolution

    Rohlfs, R. V. & Nielsen, Rasmus, 2015, In: Systematic Biology. 64, 5, p. 695-708 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Population genomics of bronze age Eurasia

    Allentoft, M. E., Sikora, M., Sjogren, K-G., Rasmussen, S., Rasmussen, M., Stenderup, J., Damgaard, P. D. B., Schroeder, H., Ahlstrom, T., Vinner, L., Malaspinas, A. S., Margaryan, A., Higham, T., Chivall, D., Lynnerup, N., Harvig, L. L., Baron, J., Della Casa, P., Dabrowski, P., Duffy, P. R. & 46 others, Ebel, A. V., Epimakhov, A., Frei, K., Furmanek, M., Gralak, T., Gromov, A., Gronkiewicz, S., Grupe, G., Hajdu, T., Jarysz, R., Khartanovich, V., Khokhlov, A., Kiss, V., Kolar, J., Kriiska, A., Lasak, I., Longhi, C., McGlynn, G., Merkevicius, A., Merkyte, Inga, Metspalu, M., Mkrtchyan, R., Moiseyev, V., Paja, L., Palfi, G., Pokutta, D., Pospieszny, L., Price, T. D., Saag, L., Sablin, M., Shishlina, N., Smrcka, V., Soenov, V. I., Szeverenyi, V., Toth, G., Trifanova, S. V., Varul, L., Vicze, M., Yepiskoposyan, L., Zhitenev, V., Orlando, L. A. A., Sicheritz-Ponten, T., Brunak, Søren, Nielsen, Rasmus, Kristiansen, K. & Willerslev, Eske, 2015, In: Nature Genetics. 522, 7555, p. 167-172 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    The ancestry and affiliations of Kennewick Man

    Rasmussen, M., Sikora, Martin, Albrechtsen, Anders, Korneliussen, Thorfinn Sand, Moreno Mayar, J. Víctor, Poznik, G. D., Zollikofer, C. P. E., Ponce de León, M. S., Allentoft, Morten Erik, Moltke, Ida, Jónsson, H., Valdiosera Morales, C. E., Malhi, R. S., Orlando, L. A. A., Bustamante, C. D., Stafford jr., T., Meltzer, D. J., Nielsen, Rasmus & Willerslev, Eske, 2015, In: Nature. 523, 7561, p. 455-458 4 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  9. Published

    The origin and evolution of maize in the Southwestern United States: [+ erratum]

    Rodrigues da Fonseca, Rute Andreia, Smith, B. D., Wales, N., Cappellini, Enrico, Skoglund, P., Fumagalli, M., Samaniego Castruita, J. A., Carøe, C., Avila Arcos, M. D. C., Hufnagel, D. E., Korneliussen, Thorfinn Sand, Vieira, Filipe Garrett, Jakobsson, M., Arriaza, B., Willerslev, Eske, Nielsen, Rasmus, Hufford, M. B., Albrechtsen, Anders, Ross-Ibarra, J. & Gilbert, M Thomas P, 2015, In: Nature Plants. 1, 5 p., 14003.

    Research output: Contribution to journal › Letter › Research › peer-review

  10. Published

    Uncovering the genetic history of the present-day greenlandic population

    Moltke, Ida, Fumagalli, M., Korneliussen, Thorfinn Sand, Crawford, J. E., Bjerregaard, P., Jørgensen, M. E., Grarup, Niels, Gulløv, H. C., Linneberg, Allan René, Pedersen, Oluf Borbye, Hansen, Torben, Nielsen, Rasmus & Albrechtsen, Anders, 2015, In: American Journal of Human Genetics. 96, 1, p. 54-69 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. 2014
  12. Published

    Error-prone polymerase activity causes multinucleotide mutations in humans

    Harris, K. & Nielsen, Rasmus, 1 Sep 2014, In: Genome Research. 24, 9, p. 1445-1454 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS)

    Malaspinas, A. S., Tange, O., Moreno Mayar, J. Víctor, Rasmussen, M., DiGiorgio, M., Wang, Y., Valdiosera Morales, C. E., Politis, G., Willerslev, Eske & Nielsen, Rasmus, 2014, In: Bioinformatics. 30, 20, p. 2962-2964 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    ngsTools : methods for population genetics analyses from next-generation sequencing data

    Fumagalli, M., Vieira, Filipe Garrett, Linderoth, T. & Nielsen, Rasmus, 2014, In: Bioinformatics. 30, 10, p. 1486-1487 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    ANGSD: analysis of next generation sequencing data

    Korneliussen, Thorfinn Sand, Albrechtsen, Anders & Nielsen, Rasmus, 2014, In: B M C Bioinformatics. 15, 13 p., 356.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

    Huerta-Sanchez, E., Jin, X., Asan, Bianba, Z., Peter, B. M., Vinckenbosch, N., Liang, Y., Yi, X., He, M., Somel, M., Ni, P., Wang, B., Ou, X., Huasang, Luosang, J., Cuo, Z. X. P., Li, K., Gao, G., Yin, Y., Wang, W. & 7 others, Zhang, X., Xu, X., Yang, H., Li, Y., Wang, J., Wang, J. & Nielsen, Rasmus, 2014, In: Nature. 512, 7513, p. 194-197 4 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  17. Classic Selective Sweeps Revealed by Massive Sequencing in Cattle

    Qanbari, S., Pausch, H., Jansen, S., Somel, M., Strom, T. M., Fries, R., Nielsen, Rasmus & Simianer, H., 2014, In: PLOS Genetics. 10, 2, 13 p., e1004148.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Costs and benefits of mutational robustness in RNA viruses

    Stern, A., Bianco, S., Yeh, M. T., Wright, C., Butcher, K., Tang, C., Nielsen, Rasmus & Andino, R., 2014, In: Cell Reports. 8, 4, p. 1026-1036 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Genome-wide Ancestry Patterns in Rapanui Suggest Pre-European Admixture with Native Americans

    Moreno Mayar, J. Víctor, Rasmussen, Simon, Seguin-Orlando, A., Rasmussen, M., Liang, M., Flåm, S. T., Lie, B. A., Gilfillan, G. D., Nielsen, Rasmus, Thorsby, E., Willerslev, Eske & Malaspinas, A., 2014, In: Current Biology. 24, 21, p. 2518-2525

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Maternal age effect and severe germ-line bottleneck in the inheritance of human mitochondrial DNA

    Rebolledo-Jaramillo, B., Su, M. S., Stoler, N., McElhoe, J. A., Dickins, B., Blankenberg, D., Korneliussen, Thorfinn Sand, Chiaromonte, F., Nielsen, Rasmus, Holland, M. M., Paul, I. M., Nekrutenko, A. & Makova, K. D., 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 43, p. 15474-15479 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Modeling gene expression evolution with an extended ornstein-uhlenbeck process accounting for within-species variation

    Rohlfs, R. V., Harrigan, P. & Nielsen, Rasmus, 2014, In: Molecular Biology and Evolution. 31, 1, p. 201-211 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Natural Selection Reduced Diversity on Human Y Chromosomes

    Wilson Sayres, M. A., Lohmueller, K. E. & Nielsen, Rasmus, 2014, In: PLOS Genetics. 10, 1, 12 p., e1004064.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    On detecting incomplete soft or hard selective sweeps using haplotype structure

    Ferrer-Admetlla, A., Liang, M., Korneliussen, Thorfinn Sand & Nielsen, Rasmus, 2014, In: Molecular Biology and Evolution. 31, 5, p. 1275-1291 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears

    Liu, S., Lorenzen, E., Fumagalli, M., Li, B., Harris, K., Xiong, Z., Zhou, L., Korneliussen, T. S., Somel, M., Babbitt, C., Wray, G., Li, J., He, W., Wang, Z., Fu, W., Xiang, X., Morgan, C. C., Doherty, A., O'Connell, M. J., McInerney, J. O. & 9 others, Born, E. W., Dalén, L., Dietz, R., Orlando, L. A. A., Sonne, C., KU, thw266, Nielsen, Rasmus, Willerslev, Eske & Wang, J., 2014, In: Cell. 157, 4, p. 785-794 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Selection on a Variant Associated with Improved Viral Clearance Drives Local, Adaptive Pseudogenization of Interferon Lambda 4 (IFNL4)

    Key, F. M., Peter, B., Dennis, M. Y., Huerta-Sánchez, E., Tang, W., Prokunina-Olsson, L., Nielsen, Rasmus & Andrés, A. M., 2014, In: PLOS Genetics. 10, 10, 12 p., e1004681.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. The lengths of admixture tracts

    Liang, M. & Nielsen, Rasmus, 2014, In: Genetics. 197, 3, p. 953-967 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil

    Malaspinas, A. S., Lao, O., Schroeder, H., Rasmussen, M., Raghavan, M., Moltke, I., Campos, P., Sagredo, F. S., Rasmussen, S., Gonçalves, V. F., Albrechtsen, A., Allentoft, M. E., Johnson, P. L. F., Li, M., Reis, S., Bernardo, D. V., DeGiorgio, M., Duggan, A. T., Bastos, M., Wang, Y. & 20 others, Stenderup, Jesper Tandberg, Moreno Mayar, J. Víctor, Brunak, S., Sicheritz-Ponten, T., Hodges, E., Hannon, G. J., Orlando, L. A. A., Price, T. D., Jensen, J. D., Nielsen, Rasmus, Heinemeier, J., Olsen, J., Rodrigues-Carvalho, C., Lahr, M. M., Neves, W. A., Kayser, M., Higham, T., Stoneking, M., Pena, S. D. J. & Willerslev, Eske, 2014, In: Current biology : CB. 24, 21, p. R1035-R1037 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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