Rasmus Nielsen

Rasmus Nielsen

Professor

ORCID: 0000-0003-0513-6591

Publication year:
All
1 - 50 out of 255Page size: 50
  1. 1994
  2. Published

    Intracellular calcium modulates basolateral K(+)-permeability in frog skin epithelium

    Larsen, Birger Brodin, Rytved, K. A. & Nielsen, Rasmus, 1994, In: Pflügers Archiv - European Journal of Physiology. 426, 1-2, p. 171-3 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. 1996
  4. Published

    An increase in [Ca2+]i activates basolateral chloride channels and inhibits apical sodium channels in frog skin epithelium

    Larsen, Birger Brodin, Rytved, K. A. & Nielsen, Rasmus, 1996, In: Pflügers Archiv - European Journal of Physiology. 433, 1-2, p. 16-25 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. 1997

  6. Site-by-site estimation of the rate of substitution and the correlation of rates in mitochondrial DNA

    Nielsen, Rasmus, 1 Jan 1997, In: Systematic Biology. 46, 2, p. 346-353 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Robustness of the Estimator of the Index of Dispersion for DNA Sequences

    Nielsen, Rasmus, 1 Jun 1997, In: Molecular Phylogenetics and Evolution. 7, 3, p. 346-351 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. 1998

  9. Maximum-likelihood estimation of population divergence times and population phylogeny in models without mutation

    Nielsen, Rasmus, Mountain, J. L., Huelsenbeck, J. P. & Slatkin, M., 1 Jan 1998, In: Evolution. 52, 3, p. 669-677 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Taxon sampling and the accuracy of large phylogenies

    Rannala, B., Huelsenbeck, J. P., Yang, Z. & Nielsen, Rasmus, 1 Jan 1998, In: Systematic Biology. 47, 4, p. 702-710 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  11. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

    Nielsen, Rasmus & Yang, Z., 1 Mar 1998, In: Genetics. 148, 3, p. 929-936 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Synonymous and nonsynonymous rate variation in nuclear genes of mammals

    Yang, Z. & Nielsen, Rasmus, 23 Apr 1998, In: Journal of Molecular Evolution. 46, 4, p. 409-418 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. 1999

  14. Changes in ds/dn in the HIV-1 env Gene

    Nielsen, Rasmus, 1999, In: MOLECULAR BIOLOGY AND EVOLUTION . 16, 5, p. 711-714 4 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  15. Effect of nonindependent substitution on phylogenetic accuracy

    Huelsenbeck, J. P. & Nielsen, Rasmus, 1999, In: Systematic Biology. 48, 2, p. 317-328 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Evidence for a Na+/Ca2+ exchange mechanism in frog skin epithelium

    Madsen, K. H., Larsen, Birger Brodin & Nielsen, Rasmus, 1999, In: Pflügers Archiv - European Journal of Physiology. 437, 2, p. 175-81 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Single-Locus Tests of Microsatellite Evolution: Multi-Step Mutations and Constraints on Allele Size

    Nielsen, Rasmus & Palsbøll, P. J., 1999, In: Molecular Phylogenetics and Evolution. 11, 3, p. 477-484 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. The molecular clock is gone but not forgotten: What about Molecular Clocks? Symposium at the Annual Meeting of the Society for the Study of Evolution (SSE), Madison, Wisconsin, USA, 22-26 June 1999

    Nielsen, Rasmus, 1999, In: Trends in Genetics. 15, 11, p. 442-443 2 p.

    Research output: Contribution to journal › Conference article › Research › peer-review

  19. Variation in the pattern of nucleotide substitution across sites

    Huelsenbeck, J. P. & Nielsen, Rasmus, 1999, In: Journal of Molecular Evolution. 48, 1, p. 86-93 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. 2001

  21. Distinguishing Migration From Isolation: A Markov Chain Monte Carlo Approach

    Nielsen, Rasmus & Wakeley, J., 2001, In: Genetics. 158, 2, p. 885-896 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. The discovery of Single-Nucleotide Polymorphisms: and Inferences about Human Demographic History

    Wakeley, J., Nielsen, Rasmus, Liu-Cordero, S. N. & Ardlie, K., 2001, In: American Journal of Human Genetics. 69, 6, p. 1332-1347 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. 2002

  24. Bayesian estimation of the number of inversions in the history of two chromosomes

    York, T. L., Durrett, R. & Nielsen, Rasmus, 1 Dec 2002, In: Journal of Computational Biology. 9, 6, p. 805-818 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. 2003

  26. Correcting for ascertainment biases when analyzing SNP data: applications to the estimation of linkage disequilibrium

    Nielsen, Rasmus & Signorovitch, J., 2003, In: Theoretical Population Biology. 63, 3, p. 245-255 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Positive Selection in the Human Genome Inferred from Human-Chimp-Mouse Orthologous Gene Alignments

    Clark, A. G., Glanowski, S., Nielsen, Rasmus, Thomas, P., Kejariwal, A., Todd, M. J., Tanenbaum, D. M., Civello, D., Lu, F., Murphy, B., Ferriera, S., Wang, G., Zheng, X., White, T. J., Sninsky, J. J., Adams, M. D. & Cargill, M., 2003, In: Cold Spring Harbor Symposia on Quantitative Biology. 68, 1, p. 479-486 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. 2004
  29. Published

    Adaptive evolution of cytochrome c oxidase: Infrastructure for a carnivorous plant radiation

    Jobson, R. W., Nielsen, Rasmus, Laakkonen, L., Wikström, M. & Albert, V. A., 2004, In: Proceedings of the National Academy of Sciences of the United States of America. 101, 52, p. 18064-18068 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. 2005
  31. Published

    A Scan for Positively Selected Genes in the Genomes of Humans and Chimpanzees

    Nielsen, Rasmus, Bustamente, C., Clark, A. G., Glanowski, S., Sackton, T. B., Hubisz, M. J., Fledel-Alon, A., Tanenbaum, D. M., Civello, D., White, T. J., Sninsky, J. J., Adams, M. D. & Cargill, M., 2005, In: PLoS - Biology. 3, 6, p. e170

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    A likelihood ratio test for species membership based on DNA sequence data

    Matz, M. V. & Nielsen, Rasmus, 2005, In: Philosophical Transactions of the Royal Society of London. Biological Sciences. 360, 1462, p. 1969-1974

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Ascertainment bias in studies of human genome-wide polymorphism

    Clark, A. G., Hubisz, M. J., Bustamente, C. D., Williamson, S. H. & Nielsen, Rasmus, 2005, In: Genome Research. 15, 11, p. 1496-1502

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Bayes Empirical Bayes Inference of Amino Acid Sites Under Positive Selection

    Yang, Z., Wong, W. S. W. & Nielsen, Rasmus, 2005, In: Molecular Biology and Evolution. 22, 4, p. 1107-1118

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Bayesian and maximum likelihood estimation of genetic maps

    York, T. L., Durrett, R. T., Tanksley, S. & Nielsen, Rasmus, 2005, In: Genetics Research. 85, 2, p. 159-168

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments

    Wang, Y., van der Hoeven, R. S., Nielsen, Rasmus, Mueller, L. A. & Tanksley, S. D., 2005, In: Theoretical and Applied Genetics. 112, 1, p. 72-84

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution

    Richards, S., Liu, Y., Bettencourt, B. R., Hradecky, P., Letovsky, S., Nielsen, Rasmus & et al., 2005, In: Genome Research. 15, 1, p. 1-18

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Detecting Site-Specific Physicochemical Selective Pressures: Applications to the Class I HLA of the Human Major Histocompatibility Complex and the SRK of the Plant Sporophytic Self-Incompatibility System

    Sainudiin, R., Wong, W. S. W., Yogeeswaran, K., Nasrallah, J. B., Yang, Z. & Nielsen, Rasmus, 2005, In: Journal of Molecular Evolution. 60, 3, p. 315-326

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Detecting coevolving amino acid sites using Bayesian mutational mapping

    Dimmic, M. W., Hubisz, M. J., Bustamente, C. D. & Nielsen, Rasmus, 2005, In: Bioinformatics. 21, 1, p. i126-i135

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Detecting selection needs comparative data

    Nielsen, Rasmus & Hubisz, M. J., 2005, In: Nature. 433, 7023, p. E6

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Disclosure of variation

    Nielsen, Rasmus, 2005, In: Nature. 434, 7031, p. 288-289

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Evaluation of an Improved Branch-Site Likelihood Method for Detecting Positive Selection at the Molecular Level

    Zhang, J., Nielsen, Rasmus & Yang, Z., 2005, In: Molecular Biology and Evolution. 22, 12, p. 2472-2479

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Genomic scans for selective sweeps using SNP data

    Nielsen, Rasmus, Williamson, S., Kim, Y., Hubisz, M. J., Clark, A. G. & Bustamente, C., 2005, In: Genome Research. 15, 11, p. 1566-1575

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Mapping Mutations on Phylogenies

    Nielsen, Rasmus, 2005, Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics. Dunn, M. J., Jorde, L. B., Little, P. F. R. & Subramaniam, S. (eds.). Wiley

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  45. Published

    Molecular Signatures of Natural Selection

    Nielsen, Rasmus, 2005, In: Annual Review of Genetics. 39, p. 197-218

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Natural selection on protein-coding genes in the human genome

    Bustamente, C. D., Fledel-Alon, A., Williamson, S., Nielsen, Rasmus, Hubisz, M., Glanowski, S., Tanenbaum, D. M., White, T. J., Sninsky, J. J., Hernandez, R. D., Civello, D., Adams, M. D., Cargill, M. & Clark, A. G., 2005, In: Nature. 437, 7062, p. 1153-1157

    Research output: Contribution to journal › Letter › Research

  47. Published

    Peopling the Americas

    Nielsen, Rasmus, 2005, In: European Journal of Human Genetics. 13, 10, p. 1100-1101

    Research output: Contribution to journal › Comment/debate › Research

  48. Published

    Simultaneous inference of selection and population growth from patterns of variation in the human genome

    Williamson, S. H., Hernandez, R., Fledel-Alon, A., Zhu, L., Nielsen, Rasmus & Bustamente, C. D., 2005, In: Proceedings of the National Academy of Science of the United States of America. 102, 22, p. 7882-7887

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Statistical Methods in Molecular Evolution

    Nielsen, Rasmus (ed.), 2005, New York: Springer. 508 p. (Statistics for Biology and Health).

    Research output: Book/Report › Book › Research › peer-review

  50. Published

    The Population Structure of African Cultivated Rice Oryza glaberrima (Steud.): Evidence for Elevated Levels of Linkage Disequilibrium Caused by Admixture with O. sativa and Ecological Adaptation

    Semon, M., Nielsen, Rasmus, Jones, M. P. & McCouch, S. R., 2005, In: Genetics. 169, 3, p. 1639-1647

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. 2006
  52. Published

    Comparative genomics: Difference of expression

    Nielsen, Rasmus, 2006, In: Nature. 440, 7081, p. 161-161

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    CpG + CpNpG Analysis of Protein-Coding Sequences from Tomato

    Hobolth, A., Nielsen, Rasmus, Wang, Y., Wu, F. & Tanksley, S. D., 2006, In: Molecular Biology and Evolution. 23, 6, p. 1318-1323

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Identification of physicochemical selective pressure on protein encoding nucleotide sequences

    Wong, W. S. W., Sainudiin, R. & Nielsen, Rasmus, 2006, In: BMC Bioinformatics. 7, 10 p., 148.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Novel Method To Identify Source-Associated Phylogenetic Clustering Shows that Listeria monocytogenes Includes Niche-Adapted Clonal Groups with Distinct Ecological Preferences

    Nightingale, K. K., Lyles, K., Ayodele, M., Jalan, P., Nielsen, Rasmus & Wiedmann, M., 2006, In: Journal of Clinical Microbiology. 44, 10, p. 3742-3751

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    REDUCING AN INTELLECTUAL DEFICIT: COALESCENT THEORY FOR (ALMOST) EVERYONE

    Nielsen, Rasmus, 2006, In: Evolution. 60, 1, p. 208-209

    Research output: Contribution to journal › Review › Research

  57. Published

    Statistical Approaches for DNA Barcoding

    Nielsen, Rasmus & Matz, M., 2006, In: Systematic Biology. 55, 1, p. 162-169

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Why Sex?

    Nielsen, Rasmus, 2006, In: Science. 311, 5763, p. 960-961

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. 2007
  60. Published

    A Bayesian multilocus association method: allowing for higher-order interaction in association studies

    Albrechtsen, Anders, Castella, S., Andersen, G., Hansen, T., Pedersen, O. & Nielsen, Rasmus, 2007, In: Genetics. 176, 2, p. 1197-208 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Adaptive genic evolution in the Drosophila genomes

    Shapiro, J. A., Huang, W., Zhang, C., Hubisz, M. J., Lu, J., Turissini, D. A., Fang, S., Wang, H., Hudson, R. R., Nielsen, Rasmus, Chen, Z. & Wu, C., 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 7, p. 2271-6 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Ancient bacteria show evidence of DNA repair.

    Johnson, S. S., Hebsgaard, M. B., Christensen, T. R., Mastepanov, M., Nielsen, Rasmus, Munch, K., Brand, T., Gilbert, M Thomas P, Zuber, M. T., Bunce, M., Rønn, Regin, Gilichinsky, D., Froese, D. & Willerslev, Eske, 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 36, p. 14401-5 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

Previous 1 2 3 4 5 6 Next

ID: 3311