Rute Andreia Rodrigues da Fonseca

Rute Andreia Rodrigues da Fonseca

Associate Professor


  1. 2018
  2. Published

    A resource for sustainable management: De novo assembly and annotation of the liver transcriptome of the Atlantic chub mackerel, Scomber colias

    Machado, A. M., Felício, M., Fonseca, E., Rodrigues da Fonseca, Rute Andreia & Castro, L. F. C., 2018, In: Data in Brief. 18, p. 276-284 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. 2017
  4. Published

    Natural selection shaped the rise and fall of passenger pigeon genomic diversity

    Murray, G. G. R., Soares, A. E. R., Novak, B. J., Schaefer, N. K., Cahill, J. A., Baker, A. J., Demboski, J. R., Doll, A., Rodrigues da Fonseca, R. A., Fulton, T. L., Gilbert, T., Heintzman, P. D., Letts, B., McIntosh, G., O'Connell, B. L., Peck, M., Pipes, M-L., Rice, E. S., Santos, K. M., Sohrweide, A. G. & 4 others, Vohr, S. H., Corbett-Detig, R. B., Green, R. E. & Shapiro, B., 17 Nov 2017, In: Science. 358, 6365, p. 951-954 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution

    Tanner, A. R., Fuchs, D., Winkelmann, I. E. H., Gilbert, M Thomas P, Pankey, M. S., Oliveira Ribeiro, Â. M., Kocot, K. M., Halanych, K. M., Oakley, T. H., Rodrigues da Fonseca, Rute Andreia, Pisani, D. & Vinther, J., 15 Mar 2017, In: Proceedings of the Royal Society B: Biological Sciences. 284, 1850, 7 p., 20162818.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Marine genomics: news and views

    Oliveira Ribeiro, Â. M., Foote, A. D., Kupczok, A., Frazão, B., Limborg, Morten Tønsberg, Piñeiro, R., Abalde, S., Rocha, S. & Rodrigues da Fonseca, Rute Andreia, Feb 2017, In: Marine Genomics. 31, p. 1-8 8 p.

    Research output: Contribution to journalReviewResearchpeer-review

  7. 2016
  8. Published

    Combined transcriptomic and proteomic analysis of the posterior salivary gland from the southern blue-ringed octopus and the southern sand octopus

    Whitelaw, B. L., Strugnell, J. M., Faou, P., Rodrigues da Fonseca, Rute Andreia, Hall, N. E., Norman, M., Finn, J. & Cooke, I. R., 2016, In: Journal of Proteome Research. 15, 9, p. 3284-3297 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Comparative analysis of complete mitochondrial genomes suggests that relaxed purifying selection is driving high nonsynonymous evolutionary rate of the NADH2 gene in whitefish (Coregonus ssp.)

    Jacobsen, M. W., Rodrigues da Fonseca, Rute Andreia, Bernatchez, L. & Hansen, M. M., 2016, In: Molecular Phylogenetics and Evolution. 95, p. 161-170 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Next-generation biology: sequencing and data analysis approaches for non-model organisms

    Rodrigues da Fonseca, Rute Andreia, Albrechtsen, Anders, Themudo, G. E. C., Ramos Madrigal, Jazmin, Sibbesen, Jonas Andreas, Sørensen, L. M., Zepeda Mendoza, M. L., Campos, P., Heller, Rasmus & Pereira, R., 2016, In: Marine Genomics. 30, p. 3-13

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. 2015
  12. Published

    A refined model of the genomic basis for phenotypic variation in vertebrate hemostasis

    Ribeiro, Â. M., Zepeda Mendoza, M. L., Bertelsen, Mads Frost, Kristensen, Annemarie T., Jarvis, E. D., Gilbert, M Thomas P & Rodrigues da Fonseca, Rute Andreia, 2015, In: B M C Evolutionary Biology. 15, 8 p., 124.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Ancient genomics

    Der Sarkissian, C., Allentoft, M. E., Avila Arcos, M. D. C., Barnett, R., Campos, P. F., Cappellini, E., Ermini, L., Fernandez Garcia, R., Rodrigues da Fonseca, R. A., Ginolhac, A., Hansen, A. J., Jónsson, H., Korneliussen, T. S., Margaryan, A., Martin, M. D., Moreno Mayar, J. V., Raghavan, M., Rasmussen, M., Sandoval Velasco, M., Schroeder, H. & 6 others, Schubert, Mikkel, Seguin-Orlando, A., Wales, N., Gilbert, M Thomas P, Willerslev, Eske & Orlando, L. A. A., 2015, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 370, 1660, 12 p., 20130387.

    Research output: Contribution to journalReviewResearchpeer-review

  14. Published

    Phylogenomic analyses data of the avian phylogenomics project

    Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., Rodrigues da Fonseca, R. A., Alfaro Nuñez, L. A., Narula, N., Liu, L., Burt, D., Ellegren, H., Edwards, S. V., Stamatakis, A. & 7 others, Mindell, D. P., Cracraft, J., Braun, E. L., Warnow, T., Wang, J., Gilbert, M Thomas P & KU, thw266, 2015, In: GigaScience. 4, 9 p., 4.

    Research output: Contribution to journalJournal articleResearchpeer-review

ID: 33270633