Simon Rasmussen

Simon Rasmussen

Associate professor, group leader, Professor

ORCID: 0000-0001-6323-9041

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  1. Identification of acquired antimicrobial resistance genes

    Zankari, E., Hasman, H., Cosentino, S., Vestergaard, M., Rasmussen, Simon, Lund, O., Aarestrup, F. M. & Larsen, M. V., 2012, In: Journal of Antimicrobial Chemotherapy. 67, 11, p. 2640-4 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Immunity and mental illness: findings from a Danish population-based immunogenetic study of seven psychiatric and neurodevelopmental disorders

    Nudel, R., Benros, Michael Eriksen, Krebs, M. D., Allesøe, R. L., Lemvigh, C. K., Bybjerg-Grauholm, J., Børglum, A. D., Daly, M. J., Nordentoft, Merete, Mors, O., Hougaard, D. M., Mortensen, P. B., Buil, A., Werge, Thomas, Rasmussen, Simon & Thompson, W. K., 2019, In: European Journal of Human Genetics. 27, p. 1445-1455

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Impaired uptake and/or utilization of leucine by Saccharomyces cerevisiae is suppressed by the SPT15-300 allele of the TATA-binding protein gene

    Baerends, R. J. S., Qiu, J., Rasmussen, Simon, Nielsen, H. B. & Brandt, A., 2009, In: Applied and Environmental Microbiology. 75, 19, p. 6055-6061 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Improved metagenome binning and assembly using deep variational autoencoders

    Nissen, J. N., Johansen, Joachim, Allesoe, R. L., Sonderby, C. K., Armenteros, J. J. A., Grønbech, Christopher Heje, Jensen, Lars Juhl, Nielsen, H. B., Petersen, T. N., Winther, Ole & Rasmussen, Simon, 2021, In: Nature Biotechnology. 39, p. 555-560

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    In silico assessment of virulence factors in strains of streptococcus oralis and Streptococcus mitis isolated from patients with infective endocarditis

    Rasmussen, L. H., Højholt, K., Dargis, R., Christensen, J. J., Skovgaard, O., Justesen, U. S., Rosenvinge, F. S., Moser, Claus Ernst, Lukjancenko, O., Rasmussen, Simon & Nielsen, X. C., 1 Sep 2017, In: Journal of Medical Microbiology. 66, p. 1316-1323 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Machine learning and deep learning applications in microbiome research

    Hernandez Medina, Ricardo, Kutuzova, Svetlana, Nielsen, Knud Nor, Johansen, Joachim, Hansen, Lars Hestbjerg, Nielsen, Mads & Rasmussen, Simon, 2022, In: ISME Communications. 2, 7 p., 98.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Mapache: a flexible pipeline to map ancient DNA

    Neuenschwander, S., Cruz Dávalos, D. I., Anchieri, L., Sousa da Mota, B., Bozzi, D., Rubinacci, S., Delaneau, O., Rasmussen, Simon & Malaspinas, A., 2023, In: Bioinformatics (Online). 39, 2, 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Markers of inflammation predict survival in newly diagnosed cirrhosis: a prospective registry study

    Mynster Kronborg, T., Webel, Henry, O’Connell, M. B., Danielsen, K. V., Hobolth, L., Møller, Søren, Jensen, Rasmus Tanderup, Bendtsen, Flemming, Hansen, Torben, Rasmussen, Simon, Juel, H. B. & Kimer, N., 2023, In: Scientific Reports. 13, 11 p., 20039.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Mass spectrometry-based proteomics data from thousands of HeLa control samples

    Webel, Henry, Perez-Riverol, Y., Nielsen, A. B. & Rasmussen, Simon, 2024, In: Scientific Data. 11, 7 p., 112.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance

    Nordahl Petersen, T., Rasmussen, Simon, Hasman, H., Carøe, C., Bælum, J., Schultz, A. C., Bergmark, L., Svendsen, C. A., Lund, O., Sicheritz-Pontén, T. & Aarestrup, F. M., 10 Jul 2015, In: Scientific Reports. 5, p. 11444

    Research output: Contribution to journal › Journal article › Research › peer-review

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