Simon Rasmussen
Associate professor, group leader, Professor
Rasmussen Group
Blegdamsvej 3B, Building: 06-2-24
2200 København N
Rasmussen Group
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Dhurrin metabolism in the developing grain of Sorghum bicolor (L.) Moench investigated by metabolite profiling and novel clustering analyses of time-resolved transcriptomic data
Nielsen, L. J., Stuart, P., Picmanova, M., Rasmussen, Simon, Olsen, C. E., Harholt, J., Møller, Birger Lindberg & Bjarnholt, Nanna, 2016, In: BMC Genomics. 17, 24 p., 1021.Research output: Contribution to journal › Journal article › Research › peer-review
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Improved metagenome binning and assembly using deep variational autoencoders
Nissen, J. N., Johansen, Joachim, Allesoe, R. L., Sonderby, C. K., Armenteros, J. J. A., Grønbech, Christopher Heje, Jensen, Lars Juhl, Nielsen, H. B., Petersen, T. N., Winther, Ole & Rasmussen, Simon, 2021, In: Nature Biotechnology. 39, p. 555-560Research output: Contribution to journal › Journal article › Research › peer-review
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Binning microbial genomes using deep learning
Nissen, J. N., Sønderby, C. K., Armenteros, J. J. A., Grønbech, Christopher Heje, Nielsen, H. B., Petersen, T. N., Winther, Ole & Rasmussen, Simon, 2018, (bioRxiv).Research output: Working paper › Preprint › Research
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Defining NASH from a multi-omics systems biology perspective
Niu, Lili, Sulek, K., Vasilopoulou, C. G., Santos, A., Albrechtsen, Nicolai Jacob Wewer, Rasmussen, Simon, Meier, F. & Mann, Matthias, 2021, In: Journal of Clinical Medicine. 10, 20, 22 p., 4673.Research output: Contribution to journal › Review › Research › peer-review
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Noninvasive proteomic biomarkers for alcohol-related liver disease
Niu, Lili, Thiele, M., Geyer, P. E., Rasmussen, D. N., Webel, Henry, Santos, A., Gupta, R., Meier, F., Strauss, Maximilian, Kjaergaard, M., Lindvig, K., Jacobsen, S., Rasmussen, Simon, Hansen, Torben, Krag, A. & Mann, Matthias, 2022, In: Nature Medicine. 28, 6, p. 1277-1287 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance
Nordahl Petersen, T., Rasmussen, Simon, Hasman, H., Carøe, C., Bælum, J., Schultz, A. C., Bergmark, L., Svendsen, C. A., Lund, O., Sicheritz-Pontén, T. & Aarestrup, F. M., 10 Jul 2015, In: Scientific Reports. 5, p. 11444Research output: Contribution to journal › Journal article › Research › peer-review
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Immunity and mental illness: findings from a Danish population-based immunogenetic study of seven psychiatric and neurodevelopmental disorders
Nudel, R., Benros, Michael Eriksen, Krebs, M. D., Allesøe, R. L., Lemvigh, C. K., Bybjerg-Grauholm, J., Børglum, A. D., Daly, M. J., Nordentoft, Merete, Mors, O., Hougaard, D. M., Mortensen, P. B., Buil, A., Werge, Thomas, Rasmussen, Simon & Thompson, W. K., 2019, In: European Journal of Human Genetics. 27, p. 1445-1455Research output: Contribution to journal › Journal article › Research › peer-review
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An immunogenetic investigation of 30 autoimmune and autoinflammatory diseases and their links to psychiatric disorders in a nationwide sample
Nudel, R., Allesøe, R. L., Werge, Thomas, Thompson, W. K., Rasmussen, Simon & Benros, Michael Eriksen, 2023, In: Immunology. 168, 4, p. 622-639Research output: Contribution to journal › Journal article › Research › peer-review
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A large-scale investigation into the role of classical HLA loci in multiple types of severe infections, with a focus on overlaps with autoimmune and mental disorders
Nudel, R., Allesøe, R. L., Thompson, W. K., Werge, Thomas, Rasmussen, Simon & Benros, Michael Eriksen, 2021, In: Journal of Translational Medicine. 19, 230.Research output: Contribution to journal › Journal article › Research › peer-review
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Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European
Olalde, I., Allentoft, M. E., Sánchez-Quinto, F., Santpere, G., Chiang, C. W. K., DiGeorgio, M., Prado-Martínez, J., Rodríguez Pérez, J. A., Rasmussen, S., Quilez, J., Ramírez, O., Marigorta, U. M., Fernández-Callejo, M., Prada, M. E., Encinas, J. M. V., Nielsen, R., Netea, M. G., Novembre, J., Sturm, R. A., Sabeti, P. & 4 others, , 2014, In: Nature. 507, 7491, p. 225-228 4 p.Research output: Contribution to journal › Letter › Research › peer-review
ID: 204201681
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1365
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Genome-scale cold stress response regulatory networks in ten Arabidopsis thaliana ecotypes
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
607
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Bifidobacterium bifidum actively changes the gene expression profile induced by Lactobacillus acidophilus in murine dendritic cells
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
433
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Discovery, genotyping and characterization of structural variation and novel sequence at single nucleotide resolution from de novo genome assemblies on a population scale
Research output: Contribution to journal › Journal article › Research › peer-review
Published