Simon Rasmussen
Associate professor, group leader, Professor
Rasmussen Group
Blegdamsvej 3B, Building: 06-2-24
2200 København N
Rasmussen Group
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Rare truncating variants in the sarcomeric protein titin associate with familial and early-onset atrial fibrillation
Ahlberg, G., Refsgaard, L., Lundegaard, Pia Rengtved, Andreasen, Laura Korsholm, Ranthe, M. F., Linscheid, N., Nielsen, J. B., Melbye, M., Haunsø, Stig, Sajadieh, Ahmad, Camp, L., Olesen, Søren-Peter, Rasmussen, Simon, Lundby, Alicia, Ellinor, P. T., Holst, A. G., Svendsen, Jesper Hastrup & Olesen, Morten Steen Salling, 2018, In: Nature Communications. 9, 1, 11 p., 4316.Research output: Contribution to journal › Journal article › Research › peer-review
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Population Genomics of Stone Age Eurasia
Allentoft, M. E., Sikora, M., Refoyo-Martínez, A., Irving-Pease, E. K., Fischer, A., Barrie, W., Ingason, A., Stenderup, J., Sjögren, K-G., Pearson, A., Mota, B., Paulsson, B. S., Halgren, A., Macleod, R., Schjellerup Jørkov, M. L., Demeter, F., Novosolov, M., Sørensen, L., Nielsen, P-O., Henriksen, R. H. A. & 143 others, , 2022, p. 1-71, (bioRxiv).Research output: Working paper › Preprint › Research
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100 ancient genomes show repeated population turnovers in Neolithic Denmark
Allentoft, M. E., Sikora, M., Fischer, A., Sjögren, K-G., Ingason, A., Macleod, R., Rosengren, A., Schulz Paulsson, B., Jørkov, M. L. S., Novosolov, M., Stenderup, J., Price, T. D., Mortensen, M. F., Nielsen, A. B., Hede, M. U., Sørensen, L., Nielsen, P. O., Rasmussen, P., Jensen, T. Z. T., Refoyo-Martínez, A. & 48 others, , 2024, In: Nature. 625, 7994, p. 329-337 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Population genomics of post-glacial western Eurasia
Allentoft, M. E., Sikora, M., Refoyo-Martínez, A., Irving-Pease, E. K., Fischer, A., Barrie, W., Ingason, A., Stenderup, J., Sjögren, K-G., Pearson, A., da Mota, B. S., Paulsson, B. S., Halgren, A., Macleod, R., Jørkov, M. L. S., Demeter, F., Sørensen, L., Nielsen, P. O., Henriksen, R. A., Vimala, T. & 144 others, , 2024, In: Nature. 625, 7994, p. 301-311Research output: Contribution to journal › Journal article › Research › peer-review
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Deep Learning for Cross-Diagnostic Prediction of Mental Disorder Diagnosis and Prognosis Using Danish Nationwide Register and Genetic Data
Allesøe, R. L., Thompson, W. K., Bybjerg-Grauholm, J., Hougaard, D. M., Nordentoft, Merete, Werge, Thomas, Rasmussen, Simon & Benros, Michael Eriksen, 2023, In: JAMA Psychiatry. 80, 2, p. 146-155 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Discovery of drug-omics associations in type 2 diabetes with generative deep-learning models: [with Author Correction]
Allesøe, R. L., Lundgaard, A. T., Hernández Medina, R., Aguayo-Orozco, A., Johansen, J., Nissen, J. N., Brorsson, C., Mazzoni, G., Niu, L., Biel, J. H., Brasas, V., Webel, H., Benros, M. E., Pedersen, A. G., Chmura, P. J., Jacobsen, U. P., Mari, A., Koivula, R., Mahajan, A., Vinuela, A. & 31 others, , 2023, In: Nature Biotechnology. 41, 3, p. 399–408 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Deep learning-based integration of genetics with registry data for stratification of schizophrenia and depression
Allesøe, R. L., Nudel, R., Thompson, W. K., Wang, Y., Nordentoft, Merete, Børglum, A. D., Hougaard, D. M., Werge, Thomas, Rasmussen, Simon & Benros, Michael Eriksen, 2022, In: Science Advances. 8, 26, eabi7293.Research output: Contribution to journal › Journal article › Research › peer-review
Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products
Almeida, M., Hébert, A., Abraham, A., Rasmussen, Simon, Monnet, C., Pons, N., Delbès, C., Loux, V., Batto, J., Leonard, P., Kennedy, S., Ehrlich, S. D., Pop, M., Montel, M., Irlinger, F. & Renault, P., 13 Dec 2014, In: BMC Genomics. 15, p. 1101Research output: Contribution to journal › Journal article › Research › peer-review
Impaired uptake and/or utilization of leucine by Saccharomyces cerevisiae is suppressed by the SPT15-300 allele of the TATA-binding protein gene
Baerends, R. J. S., Qiu, J., Rasmussen, Simon, Nielsen, H. B. & Brandt, A., 2009, In: Applied and Environmental Microbiology. 75, 19, p. 6055-6061 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Genome-scale cold stress response regulatory networks in ten Arabidopsis thaliana ecotypes
Barah, P., Jayavelu, N. D., Rasmussen, Simon, Nielsen, H. B., Mundy, J. & Bones, A. M., 2013, In: B M C Genomics. 14, 16 p., 722 .Research output: Contribution to journal › Journal article › Research › peer-review
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Acknowledging Lack of Inclusion in Genetic Analyses-Reply
Benros, Michael Eriksen, Allesøe, R. L. & Rasmussen, Simon, 2023, In: JAMA Psychiatry. 80, 6, p. 647-648Research output: Contribution to journal › Comment/debate › Research
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Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios
Besenbacher, S., Liu, S., Gonzalez-Izarzugaza, J. M., Grove, J., Belling, K. G., Bork-Jensen, J., Huang, S., Als, T. D., Li, S., Yadav, R., Rubio García, A., Lescai, F., Demontis, D., Rao, J., Ye, W., Mailund, T., Møllegaard Friborg, R., Pedersen, C. N. S., Xu, R., Sun, J. & 27 others, , 2015, In: Nature Communications. 6, 9 p., 5969.Research output: Contribution to journal › Journal article › Research › peer-review
Microbial community structure of Arctic multiyear sea ice and surface seawater by 454 sequencing of the 16S RNA gene
Bowman, J. S., Rasmussen, Simon, Blom, N., Deming, J. W., Rysgaard, S. & Sicheritz-Ponten, T., Jan 2012, In: I S M E Journal. 6, 1, p. 11-20 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Paleogenomic insights into the red complex bacteria Tannerella forsythia in Pre-Hispanic and Colonial individuals from Mexico
Bravo-Lopez, M., Villa-Islas, V., Rocha Arriaga, C., Villasenor-Altamirano, A. B., Guzman-Solis, A., Sandoval-Velasco, M., Wesp, J. K., Alcantara, K., Lopez-Corral, A., Gomez-Valdes, J., Mejia, E., Herrera, A., Meraz-Moreno, A., Moreno-Cabrera, M. D. L. L., Moreno-Estrada, A., Nieves-Colon, M. A., Olvera, J., Perez-Perez, J., Iversen, K. H., Rasmussen, S. & 3 others, , 2020, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 375, 1812, 13 p., 20190580.Research output: Contribution to journal › Journal article › Research › peer-review
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Genetic analysis of blood molecular phenotypes reveals common properties in the regulatory networks affecting complex traits
Brown, A. A., Fernandez-Tajes, J. J., Hong, M. G., Brorsson, C. A., Koivula, R. W., Davtian, D., Dupuis, T., Sartori, A., Michalettou, T. D., Forgie, I. M., Adam, J., Allin, K. H., Caiazzo, R., Cederberg, H., De Masi, F., Elders, P. J. M., Giordano, G. N., Haid, M., Hansen, T., Hansen, T. H. & 134 others, , 2023, In: Nature Communications. 14, 17 p., 5062.Research output: Contribution to journal › Journal article › Research › peer-review
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Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism
Buescher, J. M., Liebermeister, W., Jules, M., Uhr, M., Muntel, J., Botella, E., Hessling, B., Kleijn, R. J., Le Chat, L., Lecointe, F., Mäder, U., Nicolas, P., Piersma, S., Rügheimer, F., Becher, D., Bessieres, P., Bidnenko, E., Denham, E. L., Dervyn, E., Devine, K. M. & 30 others, , 2 Mar 2012, In: Science (New York, N.Y.). 335, 6072, p. 1099-103 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Genomic characterization, phylogenetic analysis, and identification of virulence factors in Aerococcus sanguinicola and Aerococcus urinae strains isolated from infection episodes
Carkaci, D., Højholt, K., Nielsen, X. C., Dargis, R., Rasmussen, Simon, Skovgaard, O., Fuursted, K., Andersen, P. S., Stegger, M. & Christensen, J. J., Nov 2017, In: Microbial Pathogenesis. 112, p. 327-340 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
Gene expression plasticity across hosts of an invasive scale insect species
Christodoulides, N., Van Dam, A. R., Peterson, D. A., Frandsen, R. J. N., Mortensen, U. H., Petersen, Bent, Rasmussen, Simon, Normark, B. B. & Hardy, N. B., 2017, In: PLoS ONE. 12, 5Research output: Contribution to journal › Journal article › Research › peer-review
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A selective sweep on a deleterious mutation in CPT1A in Arctic populations
Clemente, F. J., Cardona, A., Inchly, C. E., Peters, B. M., Jacobs, G., Pagani, L., Lawson, D. J., Añtao, T., Vicente, M., Mitt, M., DiGiorgio, M., Faltyskova, Z., Xue, Y., Ayub, Q., Szpak, M., Mägi, R., Eriksson, A., Manica, A., Raghavan, M., Rasmussen, M. & 10 others, , 2014, In: American Journal of Human Genetics. 95, 5, p. 584-589 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The first horse herders and the impact of early Bronze Age steppe expansions into Asia
Damgaard, P. D. B., Martiniano, R., Kamm, J., Moreno Mayar, J. V., Kroonen, G., Peyrot, M., Barjamovic, G., Rasmussen, S., Zacho, C. G., Baimukhanov, N., Zaibert, V., Merz, V., Biddanda, A., Merz, I., Loman, V., Evdokimov, V., Usmanova, E., Hemphill, B., Seguin-Orlando, A., Yediay, F. E. & 31 others, , 2018, In: Science. 360, 6396, 11 p., 1422.Research output: Contribution to journal › Journal article › Research › peer-review
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137 ancient human genomes from across the Eurasian steppes
Damgaard, P. D. B., Marchi, N., Rasmussen, S., Peyrot, M., Renaud, G., Korneliussen, T. S., Moreno-Mayar, J. V., Pedersen, M. W., Goldberg, A., Usmanova, E., Baimukhanov, N., Loman, V., Hedeager, L., Pedersen, A. G., Nielsen, K., Afanasievl, G., Akmatov, K., Aldashev, A., Alpaslan, A., Baimbetov, G. & 55 others, , 2018, In: Nature. 557, 7705, p. 369-374 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
Alpha proteobacterial ancestry of the [Fe-Fe]-hydrogenases in anaerobic eukaryotes
Degli Esposti, M., Cortez, D., Lozano, L., Rasmussen, Simon, Nielsen, H. B. & Martinez Romero, E., 30 Jul 2016, In: Biology Direct. 11, p. 34Research output: Contribution to journal › Journal article › Research › peer-review
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The ubiquitin ligase RFWD3 is required for translesion DNA synthesis
Gallina, I., Hendriks, Ivo Alexander, Hoffmann, Saskia, Larsen, N. B., Johansen, Joachim, S.Colding-Christensen, Camilla, Schubert, Lisa, Sellés Baiget, Selene, Fábián, Z., Kühbacher, U., Gao, A. O., Räschle, M., Rasmussen, Simon, Nielsen, Michael Lund, Mailand, Niels & Duxin, Julien, 2021, In: Molecular Cell. 81, 3, p. 442-458.e9 27 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The population genomic legacy of the second plague pandemic
Gopalakrishnan, S., Ebenesersdóttir, S. S., Lundstrøm, I. K. C., Turner-Walker, G., Moore, K. H. S., Luisi, P., Margaryan, A., Martin, M. D., Ellegaard, M. R., Magnússon, Ó., Sigurðsson, Á., Snorradóttir, S., Magnúsdóttir, D. N., Laffoon, J. E., van Dorp, L., Liu, X., Moltke, I., Ávila-Arcos, M. C., Schraiber, J. G., Rasmussen, S. & 40 others, , 2022, In: Current Biology. 32, 21, p. 4743-4751.e6Research output: Contribution to journal › Journal article › Research › peer-review
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Transcriptome profiling of brown adipose tissue during cold exposure reveals extensive regulation of glucose metabolism
Hao, Q., Yadav, R., Basse, A. L., Petersen, S., Sonne, Si Brask, Rasmussen, Simon, Zhu, Q., Lu, Z., Wang, J., Audouze, K., Gupta, R., Madsen, L., Kristiansen, Karsten & Hansen, Jacob B., 2015, In: American Journal of Physiology: Endocrinology and Metabolism. 308, 5, p. E380-E392 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 204201681
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Genome-scale cold stress response regulatory networks in ten Arabidopsis thaliana ecotypes
Research output: Contribution to journal › Journal article › Research › peer-review
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607
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Bifidobacterium bifidum actively changes the gene expression profile induced by Lactobacillus acidophilus in murine dendritic cells
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433
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Discovery, genotyping and characterization of structural variation and novel sequence at single nucleotide resolution from de novo genome assemblies on a population scale
Research output: Contribution to journal › Journal article › Research › peer-review
Published