Thomas Sicheritz-Pontén

Thomas Sicheritz-Pontén

Professor

  • Section for Evolutionary Genomics

    Øster Farimagsgade 5, København K

    Mobile: +45+46706572471
  • Section for Evolutionary Genomics

    Øster Farimagsgade 5

    1014 København K

    Mobile: +45+46706572471

Publication year:
  1. 2021
  2. E-pub ahead of print

    Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum)

    Sanchez Barreiro, Fatima, Gopalakrishnan, Shyam, Ramos Madrigal, Jazmin, Westbury, Michael Vincent, de Manuel, M., Margaryan, Ashot, Ciucani, Marta Maria, Vieira, Filipe Garrett, Patramanis, Ioannis, Kalthoff, D. C., Timmons, Z., Sicheritz-Pontén, Thomas, Dalén, L., Ryder, O. A., Zhang, Guojie, Marques-Bonet, T., Moodley, Y. & Gilbert, M Thomas P, 7 Jul 2021, (E-pub ahead of print) In: Molecular Ecology. 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published
  4. Published

    Analysis of Selection Methods to Develop Novel Phage Therapy Cocktails Against Antimicrobial Resistant Clinical Isolates of Bacteria

    Haines, M. E. K., Hodges, F. E., Nale, J. Y., Mahony, J., van Sinderen, D., Kaczorowska, J., Alrashid, B., Akter, M., Brown, N., Sauvageau, D., Sicheritz-Pontén, Thomas, Thanki, A. M., Millard, A. D., Galyov, E. E. & Clokie, M. R. J., 2021, In: Frontiers in Microbiology. 12, 15 p., 613529.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Rapid discovery of novel prophages using biological feature engineering and machine learning

    Sirén, Kimmo, Millard, A., Petersen, Bent, Gilbert, M Thomas P, Clokie, M. R. J. & Sicheritz-Pontén, Thomas, 2021, In: NAR Genomics and Bioinformatics. 3, 1, 10 p., lqaa109.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. 2020
  7. Published

    A draft genome sequence of the elusive giant squid, Architeuthis dux

    Rodrigues da Fonseca, Rute Andreia, Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, Â. M., Barrio-Hernandez, I., Hoving, H., Tafur-Jimenez, R., Chu, C., Frazão, B., Petersen, Bent, Peñaloza, F., Musacchia, F., Alexander, G. C., Osório, H., Winkelmann, I., Simakov, O., Rasmussen, Simon, Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., Zhang, Guojie, Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Pontén, Thomas, Nielsen, Rasmus & Gilbert, M Thomas P, 2020, In: GigaScience. 9, 1, 12 p., giz152.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Arctic-adapted dogs emerged at the Pleistocene-Holocene transition

    Sinding, Mikkel Holger Strander, Gopalakrishnan, Shyam, Ramos Madrigal, Jazmin, de Manuel, M., Pitulko, V. V., Kuderna, L., Feuerborn, Tatiana Richtman, Frantz, L. A. F., Vieira, Filipe Garrett, Niemann, Jonas, Samaniego Castruita, J. A., Carøe, Christian, Andersen-Ranberg, Emilie Ulrikka, Jordan, P. D., Pavlova, E. Y., Nikolskiy, P. A., Kasparov, A. K., Ivanova, V. V., Willerslev, Eske, Skoglund, P., Fredholm, Merete, Wennerberg, S. E., Heide-Jørgensen, M. P., Dietz, R., Sonne, C., Meldgaard, Morten, Dalén, L., Larson, G., Petersen, Bent, Sicheritz-Pontén, Thomas, Bachmann, L., Wiig, Ø., Marques-Bonet, T., Hansen, Anders Johannes & Gilbert, M Thomas P, 2020, In: Science (New York, N.Y.). 368, 6498, p. 1495-1499 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Dense sampling of bird diversity increases power of comparative genomics

    Feng, S., Stiller, Josefin, DENG, Yuan, Armstrong, J., Fang, Qi, Hart Reeve, Andrew, Xie, D., Chen, G., Guo, C., Faircloth, B. C., Petersen, Bent, Wang, Z., Zhou, Q., Diekhans, M., Chen, W., Andreu-Sánchez, S., Margaryan, Ashot, Howard, J. T., Parent, C., Antunes Pacheco, George, Sinding, Mikkel Holger Strander, Puetz, Lara Christine, Cavill, Emily Louisa, Ribeiro, Â. M., Eckhart, L., Fjeldså, Jon, Hosner, Peter Andrew, Brumfield, R. T., Christidis, L., Bertelsen, Mads Frost, Sicheritz-Pontén, Thomas, Tietze, D. T., Robertson, B. C., Song, G., Borgia, G., Claramunt, S., Lovette, I. J., Cowen, S. J., Njoroge, P., Dumbacher, J. P., Ryder, O. A., Fuchs, J., Bunce, M., Burt, D. W., Cracraft, J., Meng, G., Hackett, S. J., Ryan, P. G., Jønsson, Knud Andreas, Jamieson, I. G., Rodrigues da Fonseca, Rute Andreia, Braun, E. L., Houde, P., Mirarab, S., Suh, A., Hansson, B., Ponnikas, S., Sigeman, H., Stervander, M., Frandsen, P. B., van der Zwan, H., van der Sluis, R., Visser, C., Balakrishnan, C. N., Clark, A. G., Fitzpatrick, J. W., Bowman, R., Chen, N., Cloutier, A., Sackton, T. B., Edwards, S. V., Foote, D. J., Shakya, S. B., Sheldon, F. H., Vignal, A., Soares, A. E. R., Shapiro, B., González-Solís, J., Ferrer-Obiol, J., Rozas, J., Riutort, M., Tigano, A., Friesen, V., Dalén, L., Urrutia, A. O., Székely, T., Liu, Y., Campana, M. G., Corvelo, A., Fleischer, R. C., Rutherford, K. M., Gemmell, N. J., Dussex, N., Mouritsen, H., Thiele, N., Delmore, K., Liedvogel, M., Franke, A., Hoeppner, M. P., Krone, O., Fudickar, A. M., Milá, B., Ketterson, E. D., Fidler, A. E., Friis, G., Parody-Merino, Á. M., Battley, P. F., Cox, M. P., Lima, N. C. B., Prosdocimi, F., Parchman, T. L., Schlinger, B. A., Loiselle, B. A., Blake, J. G., Lim, H. C., Day, L. B., Fuxjager, M. J., Baldwin, M. W., Braun, M. J., Wirthlin, M., Dikow, R. B., Ryder, T. B., Camenisch, G., Keller, L. F., Dacosta, J. M., Hauber, M. E., Louder, M. I. M., Witt, C. C., McGuire, J. A., Mudge, J., Megna, L. C., Carling, M. D., Wang, B., Taylor, S. A., Del-Rio, G., Aleixo, A., Vasconcelos, A. T. R., Mello, C. V., Weir, J. T., Haussler, D., Li, Q., Yang, H., Wang, J., Lei, F., Rahbek, Carsten, Gilbert, M Thomas P, Graves, G. R., Jarvis, E. D., Paten, B. & Zhang, Guojie, 2020, In: Nature. 587, 7833, p. 252-257

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Distinct life histories impact dikaryotic genome evolution in the rust fungus Puccinia striiformis causing stripe rust in wheat

    Chen, Yan-Jun, Schwessinger, B., Tien, R., Vogt, J. K., Sperschneider, J., Nagar, R., McMullan, M., Sicheritz-Pontén, Thomas, Sørensen, C. K., Hovmøller, M. S., Rathjen, J. P. & Justesen, A. F., 2020, In: Genome Biology and Evolution. 12, 5, p. 597-617

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Genomes of Pleistocene Siberian Wolves Uncover Multiple Extinct Wolf Lineages

    Ramos Madrigal, Jazmin, Sinding, M. S., Carøe, Christian, Mak, Sarah Siu Tze, Niemann, J., Samaniego Castruita, J. A., Fedorov, S., Kandyba, A., Germonpré, M., Bocherens, H., Feuerborn, Tatiana Richtman, Pitulko, V. V., Pavlova, E. Y., Nikolskiy, P. A., Kasparov, A. K., Ivanova, V. V., Larson, G., Frantz, L. A. F., Willerslev, Eske, Meldgaard, Morten, Petersen, Bent, Sicheritz-Pontén, Thomas, Bachmann, L., Wiig, Ø., Hansen, Anders Johannes, Gilbert, M Thomas P & Gopalakrishnan, Shyam, 2020, In: Current biology : CB. 31, p. 198-206

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Microbiota in foods from Inuit traditional hunting

    Hauptmann, A. L., Paulová, P., Hansen, Lars Hestbjerg, Sicheritz-Pontén, Thomas, Mulvad, G. & Nielsen, Dennis Sandris, 2020, In: PLoS ONE. 15, 1, 15 p., e0227819.

    Research output: Contribution to journalJournal articleResearchpeer-review

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ID: 202359275