Tom Gilbert

Tom Gilbert

Professor

Member of:

    ORCID: 0000-0002-5805-7195

    Publication year:
    All
    76 - 100 out of 442Page size: 25
    1. 2021
    2. Published

      Mitochondrial genomes of Danish vertebrate species generated for the national DNA reference database, DNAmark

      Margaryan, Ashot, Noer, Christina, Richter, S. R., Restrup, M. E., Bülow‐hansen, J. L., Leerhøi, Frederik, Arfaoui, Emilia Marie Rolander, Gopalakrishnan, Shyam, Carøe, C., Gilbert, M Thomas P & Bohmann, Kristine, 2021, In: Environmental DNA. 3, 2, p. 472-480

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      The pangenome of the fungal pathogen Neonectria neomacrospora

      Nielsen, Knud Nor, Sirén, K., Petersen, Bent, Sicheritz-Pontén, Thomas, Gilbert, M Thomas P, Korneliussen, Thorfinn Sand & Hansen, Ole Kim, 12 Mar 2021, 30 p. (bioRxiv).

      Research output: Working paper › Preprint › Research

    4. Published

      Extended survival of Pleistocene Siberian wolves into the early 20th century on the island of Honshu

      Niemann, Jonas, Gopalakrishnan, Shyam, Yamaguchi, N., Ramos Madrigal, Jazmin, Wales, N., Gilbert, M Thomas P & Sinding, M. S., 2021, In: iScience. 24, 25 p., 101904.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Identification of African swine fever virus transcription within peripheral blood mononuclear cells of acutely infected pigs

      Olesen, A. S., Kodama, M., Lohse, L., Accensi, F., Rasmussen, T. B., Lazov, Christina Marie, Limborg, Morten Tønsberg, Gilbert, M Thomas P, Bøtner, A. & Belsham, Graham John, 2021, In: Viruses. 13, 11, 2333.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      Fine-tuning biodiversity assessments: A framework to pair eDNA metabarcoding and morphological approaches

      Pereira, Catia Lucio, Gilbert, M Thomas P, Araújo, M. B. & Matias, M. G., 2021, In: Methods in Ecology and Evolution. 12, 12, p. 2397-2409 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      Dire wolves were the last of an ancient New World canid lineage

      Perri, A. R., Mitchell, K. J., Mouton, A., Alvarez-Carretero, S., Hulme-Beaman, A., Haile, J., Jamieson, A., Meachen, J., Lin, A. T., Schubert, B. W., Ameen, C., Antipina, E. E., Bover, P., Brace, S., Carmagnini, A., Carøe, C., Samaniego Castruita, J. A., Chatters, J. C., Dobney, K., dos Reis, M. & 29 others, Evin, A., Gaubert, P., Gopalakrishnan, Shyam, Gower, Graham, Heiniger, H., Helgen, K. M., Kapp, J., Kosintsev, P. A., Linderholm, A., Ozga, A. T., Presslee, S., Salis, A. T., Saremi, N. F., Shew, C., Skerry, K., Taranenko, D. E., Thompson, M., Sablin, M. V., Kuzmin, Y. V., Collins, Matthew James, Sinding, M. S., Gilbert, M Thomas P, Stone, A. C., Shapiro, B., Van Valkenburgh, B., Wayne, R. K., Larson, G., Cooper, A. & Frantz, L. A. F., 2021, In: Nature. 591, p. 87-91

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      Contrasting genetic signal of recolonization after rainforest fragmentation in African trees with different dispersal abilities

      Piñeiro, R., Hardy, O. J., Tovar, C., Gopalakrishnan, Shyam, Vieira, Filipe Garrett & Gilbert, M Thomas P, 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 27, 9 p., e2013979118.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      An integrated morphological-molecular approach reveals new insights on the systematics of the octocoral Telestula humilis (Thomson, 1927) (Octocorallia: Alcyonacea : Clavulariidae)

      Poliseno, A., Altuna, A., Puetz, Lara Christine, Mak, Sarah Siu Tze, Rios, P., Petroni, E., McFadden, C. S., Sørensen, Martin Vinther & Gilbert, M Thomas P, 2021, In: Invertebrate Systematics. 35, 3, p. 261-281 21 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      Gut Microbiota Linked with Reduced Fear of Humans in Red Junglefowl Has Implications for Early Domestication

      Puetz, Lara Christine, Delmont, T. O., Aizpurua Arrieta, Ostaizka, Guo, C., KU, thw266, Katajamaa, R., Jensen, P. & Gilbert, M Thomas P, 2021, In: Advanced Genetics. 2, 4, 12 p., 2100018.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts

      Rasmussen, Jacob Agerbo, Villumsen, Kasper Rømer, Duchene, David, Puetz, Lara Christine, Delmont, T. O., Sveier, H., Jørgensen, Louise von Gersdorff, Præbel, K., Martin, M. D., Bojesen, Anders Miki, Gilbert, M Thomas P, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2021, In: Communications Biology. 4, 10 p., 579.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      eDNA‐based biomonitoring at an experimental German vineyard to characterize how management regimes shape ecosystem diversity

      Rasmussen, Jacob Agerbo, Nielsen, M., Mak, Sarah Siu Tze, Döring, J., Klincke, F., Gopalakrishnan, Shyam, Dunn, Rob, Kauer, R. & Gilbert, M Thomas P, 2021, In: Environmental DNA. 3, 1, p. 70-82 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      Towards complete and error-free genome assemblies of all vertebrate species

      Rhie, A., McCarthy, S. A., Fedrigo, O., Damas, J., Formenti, G., Koren, S., Uliano-Silva, M., Chow, W., Fungtammasan, A., Kim, J., Lee, C., Ko, B. J., Chaisson, M., Gedman, G. L., Cantin, L. J., Thibaud-Nissen, F., Haggerty, L., Bista, I., Smith, M., Haase, B. & 107 others, Mountcastle, J., Winkler, S., Paez, S., Howard, J., Vernes, S. C., Lama, T. M., Grutzner, F., Warren, W. C., Balakrishnan, C. N., Burt, D., George, J. M., Biegler, M. T., Iorns, D., Digby, A., Eason, D., Robertson, B., Edwards, T., Wilkinson, M., Turner, G., Meyer, A., Kautt, A. F., Franchini, P., Detrich, H. W., Svardal, H., Wagner, M., Naylor, G. J. P., Pippel, M., Malinsky, M., Mooney, M., Simbirsky, M., Hannigan, B. T., Pesout, T., Houck, M., Misuraca, A., Kingan, S. B., Hall, R., Kronenberg, Z., Sović, I., Dunn, C., Ning, Z., Hastie, A., Lee, J., Selvaraj, S., Green, R. E., Putnam, N. H., Gut, I., Ghurye, J., Garrison, E., Sims, Y., Collins, J., Pelan, S., Torrance, J., Tracey, A., Wood, J., Dagnew, R. E., Guan, D., London, S. E., Clayton, D. F., Mello, C. V., Friedrich, S. R., Lovell, P. V., Osipova, E., Al-Ajli, F. O., Secomandi, S., Kim, H., Theofanopoulou, C., Hiller, M., Zhou, Y., Harris, R. S., Makova, K. D., Medvedev, P., Hoffman, J., Masterson, P., Clark, K., Martin, F., Howe, K., Flicek, P., Walenz, B. P., Kwak, W., Clawson, H., Diekhans, M., Nassar, L., Paten, B., Kraus, R. H. S., Crawford, A. J., Gilbert, M Thomas P, KU, thw266, Venkatesh, B., Murphy, R. W., Koepfli, K., Shapiro, B., Johnson, W. E., Di Palma, F., Marques-Bonet, T., Teeling, E. C., Warnow, T., Graves, J. M., Ryder, O. A., Haussler, D., O’Brien, S. J., Korlach, J., Lewin, H. A., Howe, K., Myers, E. W., Durbin, R., Phillippy, A. M. & Jarvis, E. D., 2021, In: Nature. 592, 7856, p. 737-746 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      The genome sequence of the grey wolf, Canis lupus Linnaeus 1758

      Sinding, Mikkel Holger Strander, Gopalakrishnan, Shyam, Raundrup, K., Dalén, L., Threlfall, J., Gilbert, M Thomas P, Darwin Tree of Life Barcoding collective, D. T. O. L. B. C., Wellcome Sanger Institute Tree of Life programme, W. S. I. T. O. L. P., Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, W. S. I. S. O. D. P. C. & Tree of Life Core Informatics collective, Darwin Tree of Life Consortium, T. O. L. C. I. C. D. T. O. L. C., 2021, In: Wellcome Open Research. 6, 12 p., 310.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos

      Sinding, M. S., Ciucani, M. M., Ramos Madrigal, Jazmin, Carmagnini, A., Rasmussen, Jacob Agerbo, Feng, S., Chen, G., Vieira, Filipe Garrett, Mattiangeli, V., Ganjoo, R. K., Larson, G., Sicheritz-Pontén, Thomas, Petersen, Bent, Frantz, L., Gilbert, M Thomas P & Bradley, D. G., 2021, In: iScience. 24, 11, 18 p., 103226.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      Rapid discovery of novel prophages using biological feature engineering and machine learning

      Sirén, K., Millard, A., Petersen, Bent, Gilbert, M Thomas P, Clokie, M. R. J. & Sicheritz-Pontén, Thomas, 2021, In: NAR Genomics and Bioinformatics. 3, 1, 10 p., lqaa109.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum)

      Sánchez-Barreiro, F., Gopalakrishnan, Shyam, Ramos Madrigal, Jazmin, Westbury, Michael Vincent, de Manuel, M., Margaryan, Ashot, Ciucani, M. M., Vieira, Filipe Garrett, Patramanis, Ioannis, Kalthoff, D. C., Timmons, Z., Sicheritz-Pontén, Thomas, Dalén, L., Ryder, O. A., KU, thw266, Marques-Bonet, T., Moodley, Y. & Gilbert, M Thomas P, 2021, In: Molecular Ecology. 30, 23, p. 6355-6369 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      A genomic exploration of the early evolution of extant cats and their sabre-toothed relatives: [version 1; peer review: 2 approved]

      Westbury, Michael Vincent, Barnett, R., Sandoval-Velasco, Marcela, Gower, Graham, Vieira, Filipe Garrett, de Manuel, M., Hansen, Anders Johannes, Yamaguchi, N., Werdelin, L., Marques-Bonet, T., Gilbert, M Thomas P & Lorenzen, Eline, 2021, In: Open Research Europe. 1, 15 p., 25.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      A genomic exploration of the early evolution of extant cats and their sabre-toothed relatives: [version 2; peer review: 2 approved]

      Westbury, Michael Vincent, Barnett, R., Sandoval-Velasco, Marcela, Gower, Graham, Vieira, Filipe Garrett, de Manuel, M., Hansen, Anders Johannes, Yamaguchi, N., Werdelin, L., Marques-Bonet, T., Gilbert, M Thomas P & Lorenzen, Eline, 2021, In: Open Research Europe. 1, 16 p., 25.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations

      von Seth, J., Dussex, N., Diez-del-Molino, D., van der Valk, T., Kutschera, V. E., Kierczak, M., Steiner, C. C., Liu, S., Gilbert, M. T. P., Sinding, M-H. S., Prost, S., Guschanski, K., Nathan, S. K. S. S., Brace, S., Chan, Y. L., Wheat, C. W., Skoglund, P., Ryder, O. A., Goossens, B., Gotherstrom, A. & 1 others, Dalen, L., 2021, In: Nature Communications. 12, 1, 11 p., 2393.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. 2020
    22. Published

      DNA metabarcoding and spatial modelling link diet diversification with distribution homogeneity in European bats

      Alberdi, Antton, Razgour, O., Aizpurua Arrieta, Ostaizka, Novella-Fernandez, R., Aihartza, J., Budinski, I., Garin, I., Ibanez, C., Izagirre, E., Rebelo, H., Russo, D., Vlaschenko, A., Zhelyazkova, V., Zrncic, V. & Gilbert, M Thomas P, 2020, In: Nature Communications. 11, 8 p., 1154.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens

      Barnett, R., Westbury, M. V., Sandoval-Velasco, M., Vieira, F. G., Jeon, S., Zazula, G., Martin, M. D., Ho, S. Y. W., Mather, N., Gopalakrishnan, S., Ramos-Madrigal, J., de Manuel, M., Zepeda-Mendoza, M. L., Antunes, A., Baez, A. C., De Cahsan, B., Larson, G., O’Brien, S. J., Eizirik, E., Johnson, W. E. & 11 others, Koepfli, K., Wilting, A., Fickel, J., Dalén, L., Lorenzen, Eline, Marques-Bonet, T., Hansen, Anders Johannes, KU, thw266, Bhak, J., Yamaguchi, N. & Gilbert, M Thomas P, 2020, In: Current Biology. 30, p. 5018-5025

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      Beyond DNA barcoding: The unrealized potential of genome skim data in sample identification

      Bohmann, Kristine, Mirarab, S., Bafna, V. & Gilbert, M Thomas P, 2020, In: Molecular Ecology. 29, 14, p. 2521-2534

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Tracking the history of grapevine cultivation in Georgia by combining geometric morphometrics and ancient DNA

      Bouby, L., Wales, N., Jalabadze, M., Rusishvili, N., Bonhomme, V., Ramos Madrigal, Jazmin, Evin, A., Ivorra, S., Lacombe, T., Pagnoux, C., Boaretto, E., Gilbert, M Thomas P, Bacilieri, R., Lordkipanidze, D. & Maghradze, D., 2020, In: Vegetation History and Archaeobotany. 30, p. 63-76 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. Published

      GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms

      Browne, Patrick Denis, Nielsen, Tue Kjærgaard, Kot, Witold, Aggerholm, A., Gilbert, M Thomas P, Puetz, Lara Christine, Rasmussen, M., Zervas, A. & Hansen, Lars Hestbjerg, 2020, In: GigaScience. 9, 2, 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    27. Published

      Rapid loss of endogenous DNA in pig bone buried in five different environments

      Eriksen, A. M. H., Matthiesen, H., Kontopoulos, I., Gregory, D., Snoeck, C., KU, thw266, Collins, Matthew James & Gilbert, M Thomas P, 2020, In: Archaeometry. 62, 4, p. 827-846 20 p.

      Research output: Contribution to journal › Review › Research › peer-review

    Previous 1 2 3 4 5 6 7 8 ...18 Next

    ID: 12980