Tom Gilbert

Tom Gilbert

Professor

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    ORCID: 0000-0002-5805-7195

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    1. Published

      Comparative Performance of Two Whole Genome Capture Methodologies on Ancient DNA Illumina Libraries

      Ávila-Arcos, M. C., Sandoval-Velasco, Marcela, Schroeder, Hannes, Carpenter, M. L., Malaspinas, A., Wales, N., Peñaloza, F., Bustamante, C. D. & Gilbert, M Thomas P, 2014, 6 ed., bioRxiv, 37 p.

      Research output: Working paper › Preprint › Research

    2. Published

      Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations

      von Seth, J., Dussex, N., Diez-del-Molino, D., van der Valk, T., Kutschera, V. E., Kierczak, M., Steiner, C. C., Liu, S., Gilbert, M. T. P., Sinding, M-H. S., Prost, S., Guschanski, K., Nathan, S. K. S. S., Brace, S., Chan, Y. L., Wheat, C. W., Skoglund, P., Ryder, O. A., Goossens, B., Gotherstrom, A. & 1 others, Dalen, L., 2021, In: Nature Communications. 12, 1, 11 p., 2393.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      The Founding Feathers: The true ancestry of the domestic Barbary Dove

      van Grouw, H., Hernández-Alonso, G., Cavill, Emily Louisa & Gilbert, M Thomas P, 2023, In: Bulletin of the British Ornithologists' Club. 143, 2, p. 153-171 19 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      Plasmodium vivax Malaria Viewed through the Lens of an Eradicated European Strain

      van Dorp, L., Gelabert, P., Rieux, A., de Manuel, M., de-Dios, T., Gopalakrishnan, Shyam, Caroe, C., Sandoval-Velasco, Marcela, Fregel, R., Olalde, I., Escosa, R., Aranda, C., Huijben, S., Mueller, I., Marques-Bonet, T., Balloux, F., Gilbert, M Thomas P & Lalueza-Fox, C., 2020, In: MOLECULAR BIOLOGY AND EVOLUTION . 37, 3, p. 773-785 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Bone marrow and bone as a source for postmortem RNA

      van Doorn, N. L., Wilson, A. S., Willerslev, Eske & Gilbert, M Thomas P, 2011, In: Journal of Forensic Sciences. 56, 3, p. 720-725 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      Genetic affinities of an eradicated European Plasmodium falciparum strain

      de-Dios, T., van Dorp, L., Gelabert, P., Carøe, C., Sandoval-Velasco, Marcela, Fregel, R., Escosa, R., Aranda, C., Huijben, S., Balloux, F., Gilbert, M Thomas P & Lalueza-Fox, C., 2019, In: Microbial Genomics. 5, 9, 7 p., 289.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      The evolutionary history of extinct and living lions

      de Manuel, M., Barnett, R., Sandoval-Velasco, M., Yamaguchi, N., Vieira, F. G., Mendoza, M. L. Z., Liu, S., Martin, M. D., Sinding, M-H. S., Mak, S. S. T., Caroe, C., Liu, S., Guo, C., Zheng, J., Zazula, G., Baryshnikov, G., Eizirik, E., Koepfli, K-P., Johnson, W. E., Antunes, A. & 9 others, Sicheritz-Pontén, Thomas, Gopalakrishnan, Shyam, Larson, G., Yang, H., O'Brien, S. J., Hansen, Anders Johannes, KU, thw266, Marques-Bonet, T. & Gilbert, M Thomas P, 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 20, p. 10927-10934 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      Phylogenomics of the world's otters

      de Ferran, V., Figueiró, H. V., Trindade, F. D. J., Smith, O., Sinding, Mikkel Holger Strander, Trinca, C. S., Lazzari, G. Z., Veron, G., Vianna, J. A., Barbanera, F., Kliver, S., Serdyukova, N., Bulyonkova, T., Ryder, O. A., Gilbert, M Thomas P, Koepfli, K. & Eizirik, E., 2022, In: Current Biology. 32, 16, p. 3650-3658.e4 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      A draft genome sequence of the elusive giant squid, Architeuthis dux

      da Fonseca, R. R., Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, Â. M., Barrio-Hernandez, I., Hoving, H-J., Tafur-Jimenez, R., Chu, C., Frazão, B., Petersen, B., Peñaloza, F., Musacchia, F., Alexander, G. C. & 24 others, Osório, H., Winkelmann, I., Simakov, O., Rasmussen, Simon, Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., KU, thw266, Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Pontén, Thomas, Nielsen, Rasmus & Gilbert, M Thomas P, 2020, In: GigaScience. 9, 1, 12 p., giz152.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      DNA metabarcoding - need for robust experimental designs to draw sound ecological conclusions

      Zinger, L., Bonin, A., Alsos, I. G., Bálint, M., Bik, H., Boyer, F., Chariton, A. A., Creer, S., Coissac, E., Deagle, B. E., De Barba, M., Dickie, I. A., Dumbrell, A. J., Ficetola, G. F., Fierer, N., Fumagalli, L., Gilbert, M. T. P., Jarman, S., Jumpponen, A., Kauserud, H. & 7 others, Orlando, L., Pansu, J., Pawlowski, J., Tedersoo, L., Thomsen, P. F., Willerslev, Eske & Taberlet, P., 2019, In: Molecular Ecology. 28, 8, p. 1857-1862 6 p.

      Research output: Contribution to journal › Editorial › Research › peer-review

    11. Published

      Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia

      Zhou, Z., Lundstrøm, I. K. C., Tran-Dien, A., Duchêne, S., Alikhan, N., Sergeant, M. J., Langridge, G., Fotaki, Anna Katerina, Nair, S., Stenøien, H. K., Hamre, S. S., Casjens, S., Christophersen, A., Quince, C., Thomson, N. R., Weill, F., Ho, S. Y. W., Gilbert, M Thomas P & Achtman, M., 6 Aug 2018, In: Current Biology. 28, 15, p. 2420-2429 20 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      Complex evolutionary trajectories of sex chromosomes across bird taxa

      Zhou, Q., Zhang, J., Bachtrog, D., An, N., Huang, Q., Jarvis, E. D., Gilbert, M Thomas P & KU, thw266, 2014, In: Science. 346, 6215, 8 p., 1246338.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      On the origin and evolution of RNA editing in metazoans

      Zhang, P., Zhu, Y., Guo, Q., Li, J., Zhan, X., Yu, H., Xie, N., Tan, H., Lundholm, Nina, Garcia-Cuetos, L., Martin, M. D., Subirats, M. A., Su, Y., Ruiz-Trillo, I., Martindale, M. Q., Yu, J., Gilbert, M Thomas P, KU, thw266 & Li, Q., 2023, In: Cell Reports. 42, 2, 22 p., 112112.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      Bird sequencing project takes off

      KU, thw266, Rahbek, Carsten, Graves, G. R., Jarvis, E. D. & Gilbert, M Thomas P, 2015, In: Nature. 522, 7554, p. 34 1 p.

      Research output: Contribution to journal › Comment/debate › Research › peer-review

    15. Published

      A flock of Genomes

      KU, thw266, Jarvis, E. D. & Gilbert, M Thomas P, 2014, In: Science. 346, 6215, p. 1308-1309 2 p.

      Research output: Contribution to journal › Editorial › Research › peer-review

    16. Published

      Comparative genomics reveals insights into avian genome evolution and adaptation

      Zhang, G., Li, C., Li, Q., Li, B., Larkin, D. M., Lee, C., Storz, J. F., Antunes, A., Greenwold, M. J., Meredith, R. W., Ödeen, A., Cui, J., Zhou, Q., Xu, L., Pan, H., Wang, Z., Jin, L., Zhang, P., Hu, H., Yang, W. & 85 others, Hu, J., Xiao, J., Yang, Z., Liu, Y., Xie, Q., Yu, H., Lian, J., Wen, P., Zhang, F., Li, H., Zeng, Y., Xiong, Z., Liu, S., Zhou, L., Huang, Z., An, N., Wang, J., Zheng, Q., Xiong, Y., Wang, G., Wang, B., Wang, J., Fan, Y., Rodrigues da Fonseca, Rute Andreia, Alfaro Nuñez, L. A., Schubert, Mikkel, Orlando, L. A. A., Mourier, T., Howard, J. T., Ganapathy, G., Pfenning, A., Whitney, O., Rivas, M. V., Hara, E., Smith, J., Farré, M., Narayan, J., Slavov, G., Romanov, M. N., Borges, R., MacHado, J. P., Khan, I., Springer, M. S., Gatesy, J., Hoffmann, F. G., Opazo, J. C., Håstad, O., Sawyer, R. H., Kim, H., Kim, K. W., Kim, H. J., Cho, S., Li, N., Huang, Y., Bruford, M. W., Zhan, X., Dixon, A., Bertelsen, Mads Frost, Derryberry, E., Warren, W., Wilson, R. K., Li, S., Ray, D. A., Green, R. E., O'Brien, S. J., Griffin, D., Johnson, W. E., Haussler, D., Ryder, O. A., Willerslev, Eske, Graves, G. R., Alström, P., Fjeldså, Jon, Mindell, D. P., Edwards, S. V., Braun, E. L., Rahbek, Carsten, Burt, D. W., Houde, P., Zhang, Y., Yang, H., Wang, J., Jarvis, E. D., Gilbert, M Thomas P & Wang, J., 2014, In: Science. 346, 6215, p. 1311-1320 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      Comparative genomic data of the Avian Phylogenomics Project

      KU, thw266, Li, B., Li, C., Gilbert, M Thomas P, Jarvis, E. D., Wang, J. & Avian Genome Consortium, A. G. C., 2014, In: GigaScience. 3, 8 p., 26.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      Environmental genes and genomes: understanding the differences and challenges in the approaches and software for their analyses

      Zepeda Mendoza, M. L., Sicheritz-Pontén, T. & Gilbert, M Thomas P, 2015, In: Briefings in Bioinformatics. 16, 5, p. 745-758 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      DAMe: a toolkit for the initial processing of datasets with PCR replicates of double-tagged amplicons for DNA metabarcoding analyses

      Zepeda Mendoza, M. L., Bohmann, Kristine, Baez, A. C. & Gilbert, M Thomas P, 2016, In: BMC Research Notes. 9, 13 p., 255.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat

      Zepeda Mendoza, M. L., Xiong, Z., Escalera-Zamudio, M., Runge, A. K. W., Thézé, J., Streicker, D., Frank, H. K., Loza-Rubio, E., Liu, S., Ryder, O. A., Castruita, J. A. S., Katzourakis, A., Pacheco, G. A., Taboada, B., Löber, U., Pybus, O. G., Li, Y., Rojas-Anaya, E., Bohmann, K., Carmona Baez, A. & 9 others, Arias, C. F., Liu, S., Greenwood, A. D., Bertelsen, Mads Frost, White, N. E., Bunce, M., KU, thw266, Sicheritz-Ponten, T. & Gilbert, M Thomas P, 2018, In: Nature Ecology & Evolution. 2, 4, p. 659-668 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging

      Zepeda Mendoza, M. L., Roggenbuck, M., Manzano Vargas, K., Hansen, L. H., Brunak, Søren, Gilbert, M Thomas P & Sicheritz-Pontén, Thomas, 2018, In: Acta Veterinaria Scandinavica. 60, 1, p. 1-19 19 p., 61.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      DNA from soil mirrors plant taxonomic and growth form diversity

      Yoccoz, N. G., Bråthen, K. A., Gielly, L., Haile, J. S., Edwards, M. E., Goslar, T., von Stedingk, H., Brysting, A. K., Coissac, E., Pompanon, F., Sønstebo, J. H., Miquel, C., Valentini, A., de Bello, F., Chave, J., Thuiller, W., Wincker, P., Cruaud, C., Gavory, F., Rasmussen, M. & 5 others, Gilbert, M Thomas P, Orlando, L. A. A., Brochmann, C., Willerslev, Eske & Taberlet, P., 1 Aug 2012, In: Molecular Ecology. 21, 15, p. 3647-3655 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      Historical mammal extinction on Christmas Island (Indian Ocean) correlates with introduced infectious disease

      Wyatt, K. B., Campos, P. F., Gilbert, M Thomas P, Kolokotronis, S., Hynes, W. H., DeSalle, R., Daszak, P., MacPhee, R. D. E. & Greenwood, A. D., 2008, In: PLoS ONE. 3, 11, p. e3602

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960

      Worobey, M., Gemmel, M., Teuwen, D. E., Haselkorn, T., Kunstman, K., Bunce, M., Muyembe, J., Kabongo, J. M., Kalengayi, R. M., Van Marck, E., Gilbert, M Thomas P & Wolinsky, S. M., 2008, In: Nature. 455, 7213, p. 661-4 3 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Reply to Pape et al.: the phylogeography of HIV-1 group M subtype B.

      Worobey, M., Pitchenik, A. E., Gilbert, M Thomas P, Wlasiuk, G. & Rambaut, A., 2008, In: Proceedings of the National Academy of Science of the United States of America. 105, 12, p. E16

      Research output: Contribution to journal › Journal article › Research › peer-review

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    ID: 12980