Tom Gilbert
Professor
- 2011
- Published
HIV-2 down, HIV-1 to go? Understanding the possibilities of treatment as prevention
Bruhn, C. A. W. & Gilbert, M Thomas P, Apr 2011, In: The Lancet Infectious Diseases. 11, 4, p. 260-261 2 p.Research output: Contribution to journal › Comment/debate › Research
- Published
Reply to Vigilant and Langergraber: patrilocality in Neandertals is still the most plausible explanation
Lalueza-Fox, C., Rosas, A., de la Rasilla, M., Gilbert, M Thomas P & Willerslev, Eske, 3 May 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 18, p. E88 1 p.Research output: Contribution to journal › Comment/debate › Research
- Published
The evolutionary history of cockatoos (Aves: Psittaciformes: Cacatuidae)
White, N. E., Phillips, M. J., Gilbert, M Thomas P, Alfaro Nuñez, L. A., Willerslev, Eske, Mawson, P. R., Spencer, P. B. S. & Bunce, M., Jun 2011, In: Molecular Phylogenetics and Evolution. 59, 3, p. 615-622 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
High-throughput sequencing of core STR loci for forensic genetic investigations using the Roche Genome Sequencer FLX platform
Fordyce, S. L., Avila Arcos, M. D. C., Rockenbauer, Eszter, Børsting, Claus, Frank-Hansen, R., Petersen, J. F. T., Willerslev, Eske, Hansen, Anders Johannes, Morling, Niels & Gilbert, M Thomas P, 1 Aug 2011, In: BioTechniques. 51, 2, p. 127-133 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
mapDamage: testing for damage patterns in ancient DNA sequences
Ginolhac, A., Rasmussen, M., Gilbert, M Thomas P, Willerslev, Eske & Orlando, L. A. A., 1 Aug 2011, In: Bioinformatics. 27, 15, p. 2153-2155 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A simple method for the parallel deep sequencing of full influenza A genomes
Kampmann, Marie-Louise, Fordyce, S. L., Avila Arcos, M. D. C., Rasmussen, M., Willerslev, Eske, Nielsen, L. P. & Gilbert, M Thomas P, Dec 2011, In: Journal of Virological Methods. 178, 1-2, p. 243-248 6 p.Research output: Contribution to journal › Letter › Research › peer-review
- 2012
- Published
Plasmodium falciparum erythrocyte membrane protein 1 domain cassettes 8 and 13 are associated with severe malaria in children
Lavstsen, Thomas, Turner, Louise, Saguti, F., Magistrado, P. A., Rask, T. S., Jespersen, Jakob Schmidt, Wang, Christian William, Berger, S. S., Baraka, V., Marquard, A. M., Seguin-Orlando, A., Willerslev, Eske, Gilbert, M Thomas P, Lusingu, J. P. A. & Theander, Thor Grundtvig, 2012, In: Proceedings of the National Academy of Sciences of the United States of America. 109, 26, p. E1791-E1800 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals long-term vegetational stability
Jørgensen, Tina, Haile, James Seymour, Möller, P., Andreev, A., Boessenkool, S., Rasmussen, M., Kienast, F., Coissac, E., Taberlet, P., Brochmann, C., Bigelow, N. H., Andersen, K., Orlando, L. A. A., Gilbert, M Thomas P & Willerslev, Eske, 2012, In: Molecular Ecology. 21, 8, p. 1989-2003 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DNA extraction from formalin-fixed material
Campos, P. & Gilbert, M Thomas P, 2012, Ancient DNA: methods and protocols. Shapiro, B. & Hofreiter, M. (eds.). Humana Press, p. 81-85 5 p. (Methods in Molecular Biology, Vol. 840).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
DNA extraction from keratin and chitin
Campos, P. & Gilbert, M Thomas P, 2012, Ancient DNA: methods and protocols. Shapiro, B. & Hofreiter, M. (eds.). Humana Press, p. 43-49 7 p. (Methods in Molecular Biology, Vol. 840).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
DNA from keratinous tissue. Part I: hair and nail
Bengtsson, C. F., Olsen, M. E., Brandt, Luise Ørsted, Bertelsen, Mads Frost, Willerslev, Eske, Tobin, D. J., Wilson, A. S. & Gilbert, M Thomas P, 2012, In: Annals of Anatomy. 194, 1, p. 17-25 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DNA from keratinous tissue. Part II: feather
Olsen, M. E., Bengtsson, C. F., Bertelsen, Mads Frost, Willerslev, Eske & Gilbert, M Thomas P, 2012, In: Annals of Anatomy. 194, 1, p. 31-35 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fellow travellers: a concordance of colonization patterns between mice and men in the North Atlantic region
Jones, E. P., Skirnisson, K., McGovern, T. H., Gilbert, M Thomas P, Willerslev, Eske & Searle, J. B., 2012, In: BMC Evolutionary Biology. 12, 1, 8 p., 35.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic affinities of two 7,000-year-old Iberian hunter-gatherers
Sánchez-Quinto, F., Schroeder, Hannes, Ramirez, O., Avila Arcos, M. D. C., Pybus, M., Olalde, I., Velazquez, A. M. V., Marcos, M., Encinas, J., Bertranpetit, J., Orlando, L. A. A., Gilbert, M Thomas P & Lalueza-Fox, C., 2012, In: Current Biology. 22, 16, p. 1494-1499 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Islands in the ice: detecting past vegetation on Greenlandic nunataks using historical records and sedimentary ancient DNA Meta-barcoding
Jørgensen, Tina, Kjær, Kurt H., Haile, James Seymour, Rasmussen, M., Boessenkool, S., Andersen, K., Coissac, E., Taberlet, P., Brochmann, C., Orlando, L. A. A., Gilbert, M Thomas P & Willerslev, Eske, 2012, In: Molecular Ecology. 21, 8, p. 1980-1988 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity
Andersen, K., Bird, K. L., Rasmussen, M., Haile, James Seymour, Breuning-Madsen, H., Kjær, Kurt H., Orlando, L. A. A., Gilbert, M Thomas P & Willerslev, Eske, 2012, In: Molecular Ecology. 21, 8, p. 1966-1979 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mitogenome sequencing reveals shallow evolutionary histories and recent divergence time between morphologically and ecologically distinct European whitefish (Coregonus spp.)
Jacobsen, L. M. W., Hansen, M. M., Orlando, L. A. A., Bekkevold, D., Bernatchez, L., Willerslev, Eske & Gilbert, M Thomas P, 2012, In: Molecular Ecology. 21, 11, p. 2727-2742 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Monitoring endangered freshwater biodiversity using environmental DNA
Thomsen, P. F., Kielgast, J., Iversen, Lars Lønsmann, Wiuf, C. H., Rasmussen, M., Gilbert, M Thomas P, Orlando, L. A. A. & Willerslev, Eske, 2012, In: Molecular Ecology. 21, 11, p. 2565-2573 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Origins and genetic legacy of Neolithic farmers and hunter-gatherers in Europe
Skoglund, P., Malmström, H., Raghavan, M., Storå, J., Hall, P., Willerslev, Eske, Gilbert, M Thomas P, Götherström, A. & Jakobsson, M., 2012, In: Science. 336, 6080, p. 466-469 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Partial genetic turnover in Neandertals: continuity in the East and population replacement in the West
Dalén, L., Orlando, L. A. A., Shapiro, B., Brandström-Durling, M., Quam, R., Gilbert, M Thomas P, Díez Fernández-Lomana, J. C., Willerslev, Eske, Arsuaga, J. L. & Götherström, A., 2012, In: Molecular Biology and Evolution. 29, 8, p. 1893-1897 5 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Probable transmission of coxsackie B3 virus from human to chimpanzee, Denmark
Nielsen, S. C. A., Mourier, T., Baandrup, U., Søland, Tine Mangart, Bertelsen, Mads Frost, Gilbert, M Thomas P & Nielsen, L. P., 2012, In: Emerging Infectious Diseases . 18, 7, p. 1163-1165 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Proteomic analysis of a pleistocene mammoth femur reveals more than one hundred ancient bone proteins
Cappellini, Enrico, Jensen, Lars Juhl, Szklarczyk, D. M., Ginolhac, A., Rodrigues da Fonseca, Rute Andreia, Stafford jr., T., Holen, S. R., Collins, M. J., Orlando, L. A. A., Willerslev, Eske, Gilbert, M Thomas P & Olsen, Jesper Velgaard, 2012, In: Journal of Proteome Research. 11, 2, p. 917-926 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Screening mammal biodiversity using DNA from leeches
Schnell, I. B., Thomsen, P. F., Wilkinson, N., Rasmussen, M., Jensen, L. R. D., Willerslev, Eske, Bertelsen, Mads Frost & Gilbert, M Thomas P, 2012, In: Current Biology. 22, 8, p. R262-R263 2 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils
Allentoft, Morten Erik, Collins, M., Harker, D., Haile, J., Oskam, C. L., Hale, M. L., Campos, P., Samaniego Castruita, J. A., Gilbert, M Thomas P, Willerslev, Eske, Zhang, G., Scofield, R. P., Holdaway, R. N. & Bunce, M., 2012, In: Proceedings of the Royal Society B: Biological Sciences. 279, 1748, p. 4724-4733 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Finding the founder of Stockholm - A kinship study based on Y-chromosomal, autosomal and mitochondrial DNA
Malmström, H., Vretemark, M., Tillmar, A., Durling, M. B., Skoglund, P., Gilbert, M Thomas P, Willerslev, Eske, Holmlund, G. & Götherström, A., Jan 2012, In: Annals of Anatomy. 194, 1, p. 138-145 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DNA in ancient bone - where is it located and how should we extract it?
Campos, P., Craig, O. E., Turner-Walker, G., Peacock, E., Willerslev, Eske & Gilbert, M Thomas P, 20 Jan 2012, In: Annals of Anatomy. 194, 1, p. 7-16 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Glacial survival of boreal trees in northern Scandinavia
Parducci, L., Jørgensen, T., Tollefsrud, M. M., Elverland, E., Alm, T., Fontana, S. L., Bennett, K. D., Haile, J. S., Matetovici, I., Suyama, Y., Edwards, M. E., Andersen, K., Rasmussen, M., Boessenkool, S., Coissac, E., Brochmann, C., Taberlet, P., Houmark-Nielsen, M., Larsen, N. K., Orlando, L. A. A. & 4 others, , 2 Mar 2012, In: Science. 335, 6072, p. 1083-1086 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Statistical guidelines for detecting past population shifts using ancient DNA
Mourier, T., Ho, S. Y. W., Gilbert, M Thomas P, Willerslev, Eske & Orlando, L. A. A., 16 Mar 2012, In: Molecular Biology and Evolution. 29, 9, p. 2241-2251 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Improving the performance of true single molecule sequencing for ancient DNA
Ginolhac, A., Mouatt, J. T. V., Stenderup, Jesper Tandberg, Rasmussen, M., Stiller, M., Shapiro, B., Zazula, G., Froese, D., Steinmann, K. E., Thompson, J. F., Al-Rasheid, K. A. S., Gilbert, M Thomas P, Willerslev, Eske & Orlando, L. A. A., 10 May 2012, In: BMC Genomics. 13, 14 p., 177.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Clovis age Western stemmed projectile points and human coprolites at the Paisley Caves
Jenkins, D. L., Davis, L. G., Stafford jr., T., Campos, P., Hockett, B., Jones, G. T., Cummings, L. S., Yost, C., Connolly, T. J., Yohe II, R. M., Gibbons, S. C., Raghavan, M., Rasmussen, M., Paijmans, J. L. A., Hofreiter, M., Kemp, B. M., Barta, J. L., Monroe, C., Gilbert, M Thomas P & Willerslev, Eske, 13 Jul 2012, In: Science. 337, 6091, p. 223-228 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DNA from soil mirrors plant taxonomic and growth form diversity
Yoccoz, N. G., Bråthen, K. A., Gielly, L., Haile, J. S., Edwards, M. E., Goslar, T., von Stedingk, H., Brysting, A. K., Coissac, E., Pompanon, F., Sønstebo, J. H., Miquel, C., Valentini, A., de Bello, F., Chave, J., Thuiller, W., Wincker, P., Cruaud, C., Gavory, F., Rasmussen, M. & 5 others, , 1 Aug 2012, In: Molecular Ecology. 21, 15, p. 3647-3655 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Investigating the potential use of environmental DNA (eDNA) for genetic monitoring of marine mammals
Foote, A. D., Thomsen, P. F., Sveegaard, S., Wahlberg, M., Kielgast, J., Kyhn, L. A., Salling, A. B., Galatius, A., Orlando, L. A. A. & Gilbert, M Thomas P, 29 Aug 2012, In: PLoS ONE. 7, 8, 6 p., e41781.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Choosing the best plant for the job: a cost-effective assay to prescreen ancient plant remains destined for shotgun sequencing
Wales, N., Romero-Navarro, J. A., Cappellini, Enrico & Gilbert, M Thomas P, 20 Sep 2012, In: PLoS ONE. 7, 9, 8 p., e45644.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Marine turtle mitogenome phylogenetics and evolution
Duchene, S., Frey, A., Alfaro-Núñez, L. A., Dutton, P. H., Gilbert, M Thomas P & Morin, P. A., 1 Oct 2012, In: Molecular Phylogenetics and Evolution. 65, 1, p. 241-250 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Minimally destructive DNA extraction from archaeological artefacts made from whale baleen
Sinding, Mikkel Holger Strander, Gilbert, M Thomas P, Grønnow, B., Gulløv, H. C., Toft, P. A. & Foote, A. D., 1 Dec 2012, In: Journal of Archaeological Science. 39, 12, p. 3750-3753 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
High-throughput sequencing of ancient plant and mammal DNA preserved in herbivore middens
Murray, D. C., Pearson, S. G., Fullagar, R., Chase, B. M., Houston, J., Atchison, J., White, N. E., Bellgard, M. I., Clarke, E., Macphail, M., Gilbert, M Thomas P, Haile, James Seymour & Bunce, M., 14 Dec 2012, In: Quaternary Science Reviews. 58, p. 135-145 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2013
- Published
Genetic diversity among pandemic 2009 influenza viruses isolated from a transmission chain
Fordyce, S. L., Bragstad, K., Pedersen, S. S., Jensen, T. G., Gahrn-Hansen, B., Daniels, R., Hay, A., Kampmann, Marie-Louise, Bruhn, C. A. W., Moreno Mayar, J. Víctor, Avila Arcos, M. D. C., Gilbert, M Thomas P & Nielsen, L. P., 2013, In: Virology Journal. 10, 9 p., 116.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deep sequencing of RNA from ancient maize kernels
Fordyce, S. L., Avila Arcos, M. D. C., Rasmussen, M., Cappellini, Enrico, Romero-Navarro, J. A., Wales, N., Alquezar Planas, D. E., Penfield, S., Brown, T. A., Vielle-Calzada, J., Montiel, R., Jørgensen, Tina, Odegaard, N., Jacobs, M., Arriaza, B., Higham, T. F. G., Ramsey, C. B., Willerslev, Eske & Gilbert, M Thomas P, 11 Jan 2013, In: PLoS ONE. 8, 1, 9 p., e50961.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
One hundred twenty years of koala retrovirus evolution determined from museum skins
Avila Arcos, M. D. C., Ho, S. Y. W., Ishida, Y., Nikolaidis, N., Tsangaras, K., Hönig, K., Medina, R., Rasmussen, M., Fordyce, S. L., Calvignac-Spencer, S., Willerslev, Eske, Gilbert, M Thomas P, Helgen, K. M., Roca, A. L. & Greenwood, A. D., Feb 2013, In: Molecular Biology and Evolution. 30, 2, p. 299-304 6 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
When bugs reveal biodiversity
Bohmann, Kristine, Schnell, I. B. & Gilbert, M Thomas P, 13 Feb 2013, In: Molecular Ecology. 22, 4, p. 909-911 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic diversity and evolution of the head crest in the rock pigeon
Shapiro, M. D., Kronenberg, Z., Li, C., Domyan, E. T., Pan, H., Campbell, M., Tan, H., Huff, C. D., Hu, H., Vickrey, A. I., Nielsen, S. C. A., Stringham, S. A., Hu, H., Willerslev, Eske, Gilbert, M Thomas P, Yandell, M., Zhang, G. & Wang, J., 1 Mar 2013, In: Science. 339, 6123, p. 1063-1067 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ancient DNA reveals that bowhead whale lineages survived Late Pleistocene climate change and habitat shifts
Foote, A. D., Kaschner, K., Schultze, S. E., Garilao, C., Ho, S. Y. W., Post, K., Higham, T. F. G., Stokowska, C., van der Es, H., Embling, C. B., Gregersen, K., Johansson, F., Willerslev, Eske & Gilbert, M Thomas P, 9 Apr 2013, In: Nature Communications. 4, 7 p., 1677.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-term RNA persistence in postmortem contexts
Fordyce, S. L., Kampmann, Marie-Louise, van Doorn, N. L. & Gilbert, M Thomas P, 23 Apr 2013, In: Investigative Genetics. 4, 1, 7 p., 7.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mitochondrial genome diversity and population structure of the giant squid Architeuthis: genetics sheds new light on one of the most enigmatic marine species
Winkelmann, I. E. H., Campos, P., Strugnell, J., Cherel, Y., Smith, P. J., Kubodera, T., Allcock, L., Kampmann, Marie-Louise, Schroeder, Hannes, Guerra, A., Norman, M., Finn, J., Ingrao, D., Clarke, M. & Gilbert, M Thomas P, 22 May 2013, In: Proceedings of the Royal Society B: Biological Sciences. 280, 1759, 9 p., 20130273.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
Orlando, L. A. A., Ginolhac, A., Zhang, G., Froese, D., Albrechtsen, A., Stiller, M., Schubert, M., Cappellini, E., Petersen, B., Moltke, I., Johnson, P. L. F., Fumagalli, M., Mouatt, J. T. V., Raghavan, M., Korneliussen, T. S., Malaspinas, A. S., Vogt, J., Szklarczyk, D. M., Kelstrup, C., Vinther, J. & 36 others, , 4 Jul 2013, In: Nature. 499, 7456, p. 74-78 5 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
Martin, M. D., Cappellini, Enrico, Samaniego Castruita, J. A., Zepeda Mendoza, M. L., Campos, P., Seguin-Orlando, A., Wales, N., Orlando, L. A. A., Ho, S. Y. W., Dietrich, F. S., Mieczkowski, P. A., Heitman, J., Willerslev, Eske, Krogh, Anders, Ristaino, J. B. & Gilbert, M Thomas P, 18 Jul 2013, In: Nature Communications. 4, 7 p., 2172.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mitogenomic insights into a recently described and rarely observed killer whale morphotype
Foote, A. D., Morin, P., Pitman, R. L., Avila Arcos, M. D. C., Durban, J. W., Helden, A. V., Sinding, Mikkel Holger Strander & Gilbert, M Thomas P, Oct 2013, In: Polar Biology. 36, 10, p. 1519-1523 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Tracking niche variation over millennial timescales in sympatric killer whale lineages
Foote, A. D., Newton, J., Avila Arcos, M. D. C., Kampmann, Marie-Louise, Samaniego Castruita, J. A., Post, K., Rosing-Asvid, A., Sinding, Mikkel Holger Strander & Gilbert, M Thomas P, 7 Oct 2013, In: Proceedings of the Royal Society B.. 280, 1768, 9 p., 20131481.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mitogenomic analyses from ancient DNA
Paijmans, J. L. A., Gilbert, M Thomas P & Hofreiter, M., Nov 2013, In: Molecular Phylogenetics and Evolution. 69, 2, p. 404-416 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Recent diversification of a marine genus (Tursiops spp.) Tracks habitat preference and environmental change
Moura, A. E., Nielsen, S. C. A., Mouatt, J. T. V., Moreno Mayar, J. Víctor, Gilbert, M Thomas P, Gray, H. W. I., Natoli, A., Möller, L. & Hoelzel, A. R., Nov 2013, In: Systematic Biology. 62, 6, p. 865-77 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An invertebrate stomach's view on vertebrate ecology: certain invertebrates could be used as "vertebrate samplers'' and deliver DNA-based information on many aspects of vertebrate ecology
Calvignac-Spencer, S., Leendertz, F. H., Gilbert, M Thomas P & Schubert, G., 1 Nov 2013, In: BioEssays. 35, 11, p. 1004-1013 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pulling out the 1%: whole-genome capture for the targeted enrichment of ancient DNA sequencing libraries
Carpenter, M. L., Buenrostro, J. D., Valdiosera Morales, C., Schroeder, H., Allentoft, M. E., Sikora, M., Rasmussen, M., Gravel, S., Guillén, S., Nekhrizov, G., Leshtakov, K., Dimitrova, D., Theodossiev, N., Pettener, D., Luiselli, D., Sandoval, K., Moreno-Estrada, A., Li, Y., Wang, J., Gilbert, T. & 3 others, , 7 Nov 2013, In: American Journal of Human Genetics. 93, 5, p. 852-864 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2014
- Published
A flock of Genomes
KU, thw266, Jarvis, E. D. & Gilbert, M Thomas P, 2014, In: Science. 346, 6215, p. 1308-1309 2 p.Research output: Contribution to journal › Editorial › Research › peer-review
- Published
Biochemistry. Unlocking ancient protein palimpsests
Cappellini, Enrico, Collins, M. J. & Gilbert, M Thomas P, 2014, In: Science. 343, 6177, p. 1320-1322 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative Performance of Two Whole Genome Capture Methodologies on Ancient DNA Illumina Libraries
Ávila-Arcos, M. C., Sandoval-Velasco, Marcela, Schroeder, Hannes, Carpenter, M. L., Malaspinas, A., Wales, N., Peñaloza, F., Bustamante, C. D. & Gilbert, M Thomas P, 2014, 6 ed., bioRxiv, 37 p.Research output: Working paper › Preprint › Research
- Published
Comparative genomic data of the Avian Phylogenomics Project
KU, thw266, Li, B., Li, C., Gilbert, M Thomas P, Jarvis, E. D., Wang, J. & Avian Genome Consortium, A. G. C., 2014, In: GigaScience. 3, 8 p., 26.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative genomics reveals insights into avian genome evolution and adaptation
Zhang, G., Li, C., Li, Q., Li, B., Larkin, D. M., Lee, C., Storz, J. F., Antunes, A., Greenwold, M. J., Meredith, R. W., Ödeen, A., Cui, J., Zhou, Q., Xu, L., Pan, H., Wang, Z., Jin, L., Zhang, P., Hu, H., Yang, W. & 85 others, , 2014, In: Science. 346, 6215, p. 1311-1320 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complex evolutionary trajectories of sex chromosomes across bird taxa
Zhou, Q., Zhang, J., Bachtrog, D., An, N., Huang, Q., Jarvis, E. D., Gilbert, M Thomas P & KU, thw266, 2014, In: Science. 346, 6215, 8 p., 1246338.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Convergent transcriptional specializations in the brains of humans and song-learning birds
Pfenning, A. R., Hara, E., Whitney, O., Rivas, M. V., Wang, R., Roulhac, P. L., Howard, J. T., Wirthlin, M., Lovell, P. V., Ganapathy, G., Mouncastle, J., Moseley, M. A., Thompson, J. W., Soderblom, E. J., Iriki, A., Kato, M., Gilbert, M. T. P., Zhang, G., Bakken, T., Bongaarts, A. & 5 others, , 2014, In: Science. 346, 6215, 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Current perspectives and the future of domestication studies
Larson, G., Piperno, D. R., Allaby, R. G., Purugganan, M. D., Andersson, L., Arroyo-Kalin, M., Barton, L., Vigueira, C. C., Denham, T., Dobney, K., Doust, A. N., Gepts, P., Gilbert, M. T. P., Gremillion, K. J., Lucas, L., Lukens, L., Marshall, F. B., Olsen, K. M., Pires, J. C., Richerson, P. J. & 4 others, , 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 17, p. 6139-6146 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Direct evidence of milk consumption from ancient human dental calculus
Warinner, C., Hendy, J., Speller, C., Cappellini, E., Fischer, R., Trachsel, C., Arneborg, J., Lynnerup, N., Craig, O. E., Swallow, D. M., Fotakis, A. K., Jersie-Christensen, R. R., Olsen, J. V., Liebert, A., Montalva, N., Fiddyment, S., Charlton, S., Mackie, M. E., Canci, A., Bouwman, A. & 3 others, , 2014, In: Scientific Reports. 4, 6 p., 7104.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dynamic evolution of the alpha (α) and beta (β) keratins has accompanied integument diversification and the adaptation of birds into novel lifestyles
Greenwold, M. J., Bao, W., Jarvis, E. D., Hu, H., Li, C., Gilbert, M Thomas P, KU, thw266 & Sawyer, R. H., 2014, In: B M C Evolutionary Biology. 14, 16 p., 249.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Environmental DNA for wildlife biology and biodiversity monitoring
Bohmann, Kristine, Evans, A., Gilbert, M Thomas P, Carvalho, G. R., Creer, S., Knapp, M., Yu, D. W. & de Bruyn, M., 2014, In: Trends in Ecology & Evolution. 29, 6, p. 358-367 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evaluating the Y chromosomal timescale in human demographic and lineage dating
Wang, C., Gilbert, M Thomas P, Jin, L. & Li, H., 2014, In: Investigative Genetics. 5, 7 p., 12.Research output: Contribution to journal › Review › Research › peer-review
- Published
Evidence for a single loss of mineralized teeth in the common avian ancestor
Meredith, R. W., KU, thw266, Gilbert, M Thomas P, Jarvis, E. D. & Springer, M. S., 2014, In: Science. 346, 6215, 6 p., 1254390.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolutionary genomics and adaptive evolution of the hedgehog gene family (Shh, Ihh and Dhh) in vertebrates
Pereira, J., Johnson, W. E., O'Brien, S. J., Jarvis, E. D., KU, thw266, Gilbert, M Thomas P, Vasconcelos, V. & Antunes, A., 2014, In: PloS one. 9, 12, 35 p., e74132.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Extinct New Zealand megafauna were not in decline before human colonization
Allentoft, Morten Erik, Heller, Rasmus, Oskam, C. L., Lorenzen, Eline, Hale, M. L., Gilbert, M Thomas P, Jacomb, C., Holdaway, R. N. & Bunce, M., 2014, In: Proceedings of the National Academy of Sciences USA (PNAS). 111, 13, p. 4922-4927 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fifty thousand years of Arctic vegetation and megafaunal diet
Willerslev, E., Davison, J., Moora, M., Zobel, M., Coissac, E., Edwards, M. E., Lorenzen, E., Vestergård, M., Gussarova, G., Haile, J. S., Craine, J., Gielly, L., Boessenkool, S., Epp, L. S., Pearman, P. B., Cheddadi, R., Murray, D., Bråthen, K. A., Yoccoz, N., Binney, H. & 30 others, , 2014, In: Nature. 506, 7486, p. 47-51 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome
Pedersen, J. S., Valen, E., Velazquez, A. M. V., Parker, B. J., Rasmussen, M., Lindgreen, S., Lilje, B., Tobin, D. J., Kelly, T. K., Vang, S., Andersson, R., Jones, P. A., Hoover, C. A., Tikhonov, A., Prokhortchouk, E., Rubin, E. M., Sandelin, A. G., Gilbert, M. T. P., Krogh, A., Willerslev, E. & 1 others, , 2014, In: Genome Research. 24, 3, p. 454-466 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species
Li, S., Li, B., Cheng, C., Xiong, Z., Liu, Q., Lai, J., Carey, H. V., Zhang, Q., Zheng, H., Wei, S., Zhang, H., Chang, L., Liu, S., Zhang, S., Yu, B., Zeng, X., Hou, Y., Nie, W., Guo, Y., Chen, T. & 13 others, , 2014, In: Genome Biology (Online Edition). 15, 16 p., 557.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Global distribution of Chelonid fibropapilloma-associated herpesvirus among clinically healthy sea turtles
Alfaro Nuñez, L. A., Bertelsen, Mads Frost, Bojesen, Anders Miki, Rasmussen, I., Zepeda Mendoza, M. L., Olsen, Morten Tange & Gilbert, M Thomas P, 2014, In: B M C Evolutionary Biology. 14, 11 p., 206.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Herbarium specimens reveal a historical shift in phylogeographic structure of common ragweed during native range disturbance
Martin, M. D., Zimmer, E. A., Olsen, Morten Tange, Foote, A. D., Gilbert, M Thomas P & Brush, G. S., 2014, In: Molecular Ecology. 23, 7, p. 1701-1716 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Hybridization capture using short PCR products enriches small genomes by Capturing Flanking Sequences (CapFlank)
Tsangaras, K., Wales, N., Sicheritz-Pontén, T., Rasmussen, Simon, Michaux, J., Ishida, Y., Morand, S., Kampmann, Marie-Louise, Gilbert, M Thomas P & Greenwood, A. D., 2014, In: PLoS ONE. 9, 10, 10 p., e109101.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Low frequency of paleoviral infiltration across the avian phylogeny
Cui, J., Zhao, W., Huang, Z., Jarvis, E. D., Gilbert, M Thomas P, Walker, P. J., Holmes, E. C. & KU, thw266, 2014, In: Genome Biology (Online Edition). 15, 12, 13 p., 539.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Near-complete genome sequencing of swine vesicular disease virus using the Roche GS FLX sequencing platform
Nielsen, S. C. A., Bruhn, C. A. W., Samaniego Castruita, J. A., Wadsworth, J., Knowles, N. J. & Gilbert, M Thomas P, 2014, In: PLOS ONE. 9, 5, 7 p., e97180.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Optimization of DNA recovery and amplification from non-carbonized archaeobotanical remains
Wales, N., Andersen, K., Cappellini, Enrico, Avila Arcos, M. D. C. & Gilbert, M Thomas P, 2014, In: PLOS ONE. 9, 1, 14 p., e86827.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pathogens and host immunity in the ancient human oral cavity
Warinner, C., Rodrigues, J. F. M., Vyas, R., Trachsel, C., Shved, N., Grossmann, J., Radini, A., Hancock, Y., Tito, R. Y., Fiddyment, S., Speller, C., Hendy, J., Charlton, S., Luder, H. U., Salazar-García, D. C., Eppler, E., Seiler, R., Hansen, L. H., Samaniego Castruita, J. A., Barkow-Oesterreicher, S. & 12 others, , 2014, In: Nature Genetics. 46, p. 336-344 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Persistence of the mitochondrial lineage responsible for the Irish potato famine in extant New World Phytophthora infestans
Martin, M. D., Ho, S. Y. W., Wales, N., Ristaino, J. B. & Gilbert, M Thomas P, 2014, In: Molecular Biology and Evolution. 31, 6, p. 1414-1420 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Prehistoric genomes reveal the genetic foundation and cost of horse domestication
Schubert, M., Jónsson, H., Chang, D., Der Sarkissian, C., Ermini, L., Ginolhac, A., Albrechtsen, A., Dupanloup, I., Foucal, A., Petersen, B., Fumagalli, M., Raghavan, M., Seguin-Orlando, A., Korneliussen, T. S., Velazquez, A. M. V., Stenderup, J., Hoover, C. A., Rubin, C-J., Alfarhan, A. H., Alquraishi, S. A. & 15 others, , 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 52, p. E5661–E5669 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Resolution of the type material of the Asian elephant, Elephas maximus Linnaeus, 1758 (Proboscidea, Elephantidae)
Cappellini, Enrico, Gentry, A., Palkopoulou, E., Ishida, Y., Cram, D., Roos, A., Watson, M., Johansson, U. S., Fernholm, B., Agnelli, P., Barbagli, F., Littlewood, D. T. J., Kelstrup, C., Olsen, Jesper Velgaard, Lister, A. M., Roca, A. L., Dalén, L. & Gilbert, M Thomas P, 2014, In: Zoological Journal of the Linnean Society. 170, 1, p. 222-232 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Second generation sequencing and morphological faecal analysis reveal unexpected foraging behaviour by Myotis nattereri (Chiroptera, Vespertilionidae) in winter
Hope, P. R., Bohmann, Kristine, Gilbert, M Thomas P, Zepeda Mendoza, M. L., Razgour, O. & Jones, G., 2014, In: Frontiers in Zoology. 11, 15 p., 39.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Speciation and demographic history of Atlantic eels (Anguilla anguilla and A. rostrata) revealed by mitogenome sequencing
Jacobsen, M. W., Pujolar, J. M., Gilbert, M Thomas P, Moreno Mayar, J. Víctor, Bernatchez, L., Als, T. D., Lobon-Cervia, J. & Hansen, M. M., 2014, In: Heredity. 113, p. 432-442 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Storytelling and story testing in domestication
Gerbault, P., Allaby, R. G., Boivin, N., Rudzinski, A., Grimaldi, I. M., Pires, J. C., Climer Vigueira, C., Dobney, K., Gremillion, K. J., Barton, L., Arroyo-Kalin, M., Purugganan, M. D., Rubio de Casas, R., Bollongino, R., Burger, J., Fuller, D. Q., Bradley, D. G., Balding, D. J., Richerson, P. J., Gilbert, M. T. P. & 2 others, , 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 17, p. 6159-6164 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The genetic prehistory of the New World Arctic
Raghavan, M., DeGiorgio, M., Albrechtsen, A., Moltke, I., Skoglund, P., Korneliussen, T. S., Grønnow, B., Appelt, M., Gulløv, H. C., Friesen, T. M., Fitzhugh, W., Malmström, H. S., Rasmussen, S., Olsen, J., Melchior, L. C., Fuller, B. T., Fahrni, S. M., Stafford jr., T., Grimes, V., Renouf, M. A. P. & 36 others, , 2014, In: Science. 345, 6200, 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The microbiome of New World vultures
Roggenbuck, M., Schnell, I. B., Blom, N., Bælum, J., Bertelsen, M. F., Sicheritz-Pontén, T., Sørensen, Søren Johannes, Gilbert, M Thomas P, Graves, G. R. & Hansen, L. H., 2014, In: Nature Communications. 5, 7 p., 5498.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The origin and emergence of an HIV-1 epidemic: from introduction to endemicity
Bruhn, C. A. W., Audelin, A. M., Helleberg, Marie, Bjorn-Mortensen, K., Obel, Niels, Gerstoft, Jan, Nielsen, C., Melbye, M., Medstrand, P., Gilbert, M Thomas P & Esbjörnsson, J., 2014, In: AIDS (London, England). 28, 7, p. 1031-1040 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment
Li, C., Zhang, Y., Li, J., Kong, L., Hu, H., Pan, H., Xu, L., Deng, Y., Li, Q., Jin, L., Yu, H., Chen, Y., Liu, B., Yang, L., Liu, S., Zhang, Y., Lang, Y., Xia, J., He, W., Shi, Q. & 21 others, , 2014, In: GigaScience. 3, 27, 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Whole-genome analyses resolve early branches in the tree of life of modern birds
Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., Rodrigues da Fonseca, R. A., Li, J., Zhang, F., Li, H., Zhou, L., Narula, N., Liu, L., Ganapathy, G. & 85 others, , 2014, In: Science. 346, 6215, p. 1320-1331 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Yersinia pestis: one pandemic, two pandemics, three pandemics, more?
Gilbert, M Thomas P, Apr 2014, In: The Lancet Infectious Diseases. 14, 4, p. 264-265 2 p.Research output: Contribution to journal › Comment/debate › Research
- Published
Validation of a sensitive PCR assay for the detection of Chelonid fibropapilloma-associated herpesvirus in latent turtle infections
Alfaro Nuñez, L. A. & Gilbert, M Thomas P, Sep 2014, In: Journal of Virological Methods. 206, p. 38-41 4 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
The lectotype for the Asian elephant, Elephas maximus Linnaeus, 1758 (Mammalia, Proboscidea) and comments on `primary, secondary and tertiary syntypes' and `virtual lectotype designation'
Gentry, A., Lister, A. M., Roos, A., Gilbert, M Thomas P & Cappellini, Enrico, 1 Sep 2014, In: Bulletin of Zoological Nomenclature. 71, 3, 6 p.Research output: Contribution to journal › Journal article › Communication
- 2015
- Published
A common genetic origin for early farmers from Mediterranean Cardial and Central European LBK cultures
Olalde, I., Schroeder, Hannes, Sandoval-Velasco, Marcela, Vinner, Lasse, Lobón, I., Ramirez, O., Civit, S., Borja, P. G., Salazar-García, D. C., Talamo, S., Fullola, J. M., Oms, F. X., Pedro, M., Martínez, P., Sanz, M., Daura, J., Zilhão, J., Marquès-Bonet, T., Gilbert, M Thomas P & Lalueza-Fox, C., 2015, In: Molecular Biology and Evolution. 32, 12, p. 3132-3142 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A refined model of the genomic basis for phenotypic variation in vertebrate hemostasis
Ribeiro, Â. M., Zepeda Mendoza, M. L., Bertelsen, Mads Frost, Kristensen, Annemarie T., Jarvis, E. D., Gilbert, M Thomas P & Rodrigues da Fonseca, Rute Andreia, 2015, In: B M C Evolutionary Biology. 15, 8 p., 124.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ancient DNA unravels the truth behind the controversial GUS Greenlandic Norse fur samples: the bison was a horse, and the muskox and bears were goats
Sinding, Mikkel Holger Strander, Arneborg, J., Nyegaard, G. & Gilbert, M Thomas P, 2015, In: Journal of Archaeological Science. 53, p. 297-303 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ancient and modern environmental DNA
Pedersen, Mikkel Winther, Overballe-Petersen, S., Ermini, L., Der Sarkissian, C., Haile, James Seymour, Hellström, A. M., Spens, J., Thomsen, P. F., Bohmann, Kristine, Cappellini, Enrico, Schnell, I. B., Wales, N., Carøe, C., Campos, P., Schmidt, A. M. Z., Gilbert, M Thomas P, Hansen, Anders Johannes, Orlando, L. A. A. & Willerslev, Eske, 2015, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 370, 1660, 11 p., 20130383.Research output: Contribution to journal › Review › Research › peer-review
- Published
Ancient genomics
Der Sarkissian, C., Allentoft, M. E., Avila Arcos, M. D. C., Barnett, R., Campos, P. F., Cappellini, E., Ermini, L., Fernandez Garcia, R., Rodrigues da Fonseca, R. A., Ginolhac, A., Hansen, A. J., Jónsson, H., Korneliussen, T. S., Margaryan, A., Martin, M. D., Moreno Mayar, J. V., Raghavan, M., Rasmussen, M., Sandoval Velasco, M., Schroeder, H. & 6 others, , 2015, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 370, 1660, 12 p., 20130387.Research output: Contribution to journal › Review › Research › peer-review
- Published
Ancient mitochondrial DNA from the northern fringe of the Neolithic farming expansion in Europe sheds light on the dispersion process
Malmström, H., Linderholm, A., Skoglund, P., Storå, J., Sjödin, P., Gilbert, M Thomas P, Holmlund, G., Willerslev, Eske, Jakobsson, M., Lidén, K. & Götherström, A., 2015, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 370, 10 p., 20130373.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Avianbase: a community resource for bird genomics
Eöry, L., Gilbert, M Thomas P, Li, C., Li, B., Archibald, A., Aken, B. L., KU, thw266, Jarvis, E., Flicek, P. & Burt, D. W., 2015, In: Genome Biology (Online Edition). 16, 4 p., 21.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Bird sequencing project takes off
KU, thw266, Rahbek, Carsten, Graves, G. R., Jarvis, E. D. & Gilbert, M Thomas P, 2015, In: Nature. 522, 7554, p. 34 1 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Comparative performance of two whole-genome capture methodologies on ancient DNA Illumina libraries
Avila Arcos, M. D. C., Sandoval-Velasco, Marcela, Schroeder, Hannes, Carpenter, M. L., Malaspinas, A. S., Wales, N., Peñaloza, F., Bustamante, C. D. & Gilbert, M Thomas P, 2015, In: Methods in Ecology and Evolution. 6, 6, p. 725-734 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 12980
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6191
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Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
Research output: Contribution to journal › Journal article › Research › peer-review
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5645
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Deep sequencing of RNA from ancient maize kernels
Research output: Contribution to journal › Journal article › Research › peer-review
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5252
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True single-molecule DNA sequencing of a pleistocene horse bone
Research output: Contribution to journal › Journal article › Research › peer-review
Published