Tom Gilbert

Tom Gilbert

Professor

Member of:

    ORCID: 0000-0002-5805-7195

    Publication year:
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    51 - 75 out of 441Page size: 25
    1. 2022
    2. Published

      The Earth BioGenome Project 2020: Starting the clock

      Lewin, H. A., Richards, S., Aiden, E. L., Allende, M. L., Archibald, J. M., Bálint, M., Barker, K. B., Baumgartner, B., Belov, K., Bertorelle, G., Blaxter, M. L., Cai, J., Caperello, N. D., Carlson, K., Castilla-Rubio, J. C., Chaw, S. M., Chen, L., Childers, A. K., Coddington, J. A., Conde, D. A. & 65 others, Corominas, M., Crandall, K. A., Crawford, A. J., DiPalma, F., Durbin, R., Ebenezer, T. E., Edwards, S. V., Fedrigo, O., Flicek, P., Formenti, G., Gibbs, R. A., Gilbert, M Thomas P, Goldstein, M. M., Graves, J. M., Greely, H. T., Grigoriev, I. V., Hackett, K. J., Hall, N., Haussler, D., Helgen, K. M., Hogg, C. J., Isobe, S., Jakobsen, K. S., Janke, A., Jarvis, E. D., Johnson, W. E., Jones, S. J. M., Karlsson, E. K., Kersey, P. J., Kim, J. H., Kress, W. J., Kuraku, S., Lawniczak, M. K. N., Leebens-Mack, J. H., Li, X., Lindblad-Toh, K., Liu, X., Lopez, J. V., Marques-Bonet, T., Mazard, S., Mazet, J. A. K., Mazzoni, C. J., Myers, E. W., O’Neill, R. J., Paez, S., Park, H., Robinson, G. E., Roquet, C., Ryder, O. A., Sabir, J. S. M., Shaffer, H. B., Shank, T. M., Sherkow, J. S., Soltis, P. S., Tang, B., Tedersoo, L., Uliano-Silva, M., Wang, K., Wei, X., Wetzer, R., Wilson, J. L., Xu, X., Yang, H., Yoder, A. D. & KU, thw266, 2022, In: PNAS. 119, 4, 7 p., e2115635118.

      Research output: Contribution to journal › Review › Research › peer-review

    3. Published

      The era of reference genomes in conservation genomics

      Formenti, G., Theissinger, K., Fernandes, C., Bista, I., Bombarely, A., Bleidorn, C., Ciofi, C., Crottini, A., Godoy, J. A., Höglund, J., Malukiewicz, J., Mouton, A., Oomen, R. A., Paez, S., Palsbøll, P. J., Pampoulie, C., Ruiz-López, M. J., Svardal, H., Theofanopoulou, C., de Vries, J. & 8 others, Waldvogel, A. M., KU, thw266, Mazzoni, C. J., Jarvis, E., Bálint, M., Gilbert, M Thomas P, tsr259, tsr259 & European Reference Genome Atlas (ERGA) Consortium, E. R. G. A. (. C., 2022, In: Trends in Ecology and Evolution. 37, 3, p. 197-202 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      The genomic basis of the plant island syndrome in Darwin’s giant daisies

      Cerca, J., Petersen, B., Lazaro-Guevara, J. M., Rivera-Colón, A., Birkeland, S., Vizueta, J., Li, S., Li, Q., Loureiro, J., Kosawang, C., Díaz, P. J., Rivas-Torres, G., Fernández-Mazuecos, M., Vargas, P., McCauley, R. A., Petersen, G., Santos-Bay, L., Wales, N., Catchen, J. M., Machado, D. & 9 others, Nowak, M. D., Suh, A., Sinha, N. R., Nielsen, Lene Rostgaard, Seberg, Ole, Gilbert, M Thomas P, Leebens-Mack, J. H., Rieseberg, L. H. & Martin, M. D., 2022, In: Nature Communications. 13, 13 p., 3729.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      The population genomic legacy of the second plague pandemic

      Gopalakrishnan, S., Ebenesersdóttir, S. S., Lundstrøm, I. K. C., Turner-Walker, G., Moore, K. H. S., Luisi, P., Margaryan, A., Martin, M. D., Ellegaard, M. R., Magnússon, Ó., Sigurðsson, Á., Snorradóttir, S., Magnúsdóttir, D. N., Laffoon, J. E., van Dorp, L., Liu, X., Moltke, I., Ávila-Arcos, M. C., Schraiber, J. G., Rasmussen, S. & 40 others, Juan, D., Gelabert, P., de-Dios, T., Fotaki, Anna Katerina, Iraeta Orbegozo, Miren, Vågene, Åshild Joanne, Denham, S. D., Christophersen, A., Stenøien, H. K., Vieira, Filipe Garrett, Liu, Shanlin, Günther, T., Kivisild, T., Moseng, O. G., Skar, B., Cheung, C., Sandoval-Velasco, Marcela, Wales, N., Schroeder, Hannes, Campos, P. F., Guðmundsdóttir, V. B., Sicheritz-Pontén, Thomas, Petersen, Bent, Halgunset, J., Gilbert, E., Cavalleri, G. L., Hovig, E., Kockum, I., Olsson, T., Alfredsson, L., Hansen, Thomas Folkmann, Werge, Thomas, Willerslev, Eske, Balloux, F., Marques-Bonet, T., Lalueza-Fox, C., Nielsen, Rasmus, Stefánsson, K., Helgason, A. & Gilbert, M Thomas P, 2022, In: Current Biology. 32, 21, p. 4743-4751.e6

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      The potential of aquatic bloodfeeding and nonbloodfeeding leeches as a tool for iDNA characterisation

      Lynggaard, Christina Islas, Oceguera-Figueroa, A., Kvist, S., Gilbert, M Thomas P & Bohmann, Kristine, 2022, In: Molecular Ecology Resources. 22, 2, p. 539-553 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      To bee, or not to bee? One leg is the question

      Cavill, Emily Louisa, Liu, S., Zhou, X. & Gilbert, M Thomas P, 2022, In: Molecular Ecology Resources. 22, 5, p. 1868-1874 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      Travel Tales of a Worldwide Weed: Genomic Signatures of Plantago major L. Reveal Distinct Genotypic Groups With Links to Colonial Trade Routes

      Iwanycki Ahlstrand, N., Gopalakrishnan, S., Vieira, F. G., Bieker, V. C., Meudt, H. M., Dunbar-Co, S., Rothfels, C. J., Martinez-Swatson, K. A., Maldonado, C., Hassemer, G., Shipunov, A., Bowers, M. D., Gardner, E., Xu, M., Ghorbani, A., Amano, M., Grace, O. M., Pringle, J. S., Bishop, M., Manzanilla, V. & 18 others, Cotrim, H., Blaney, S., Zubov, D., Choi, H., Yesil, Y., Bennett, B., Vimolmangkang, S., El-Seedi, H. R., Staub, P. O., Li, Z., Boldbaatar, D., Hislop, M., Caddy, L. J., Muasya, A. M., Saslis-Lagoudakis, C. H., Gilbert, M Thomas P, Zerega, N. J. C. & Rønsted, Nina, 2022, In: Frontiers in Plant Science. 13, 16 p., 838166.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      Uncovering the genomic basis of an extraordinary plant invasion

      Bieker, V. C., Battlay, P., Petersen, B., Sun, X., Wilson, J., Brealey, J. C., Bretagnolle, F., Nurkowski, K., Lee, C., Barreiro, F. S., Owens, G. L., Lee, J. Y., Kellner, F. L., van Boheeman, L., Gopalakrishnan, S., Gaudeul, M., Mueller-Schaerer, H., Lommen, S., Karrer, G., Chauvel, B. & 8 others, Sun, Y., Kostantinovic, B., Dalén, L., Poczai, P., Rieseberg, L. H., Gilbert, M Thomas P, Hodgins, K. A. & Martin, M. D., 2022, In: Science Advances. 8, 34, 18 p., eabo5115.

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. 2021
    11. Published

      The pangenome of the fungal pathogen Neonectria neomacrospora

      Nielsen, Knud Nor, Sirén, K., Petersen, Bent, Sicheritz-Pontén, Thomas, Gilbert, M Thomas P, Korneliussen, Thorfinn Sand & Hansen, Ole Kim, 12 Mar 2021, 30 p. (bioRxiv).

      Research output: Working paper › Preprint › Research

    12. Published

      A genomic exploration of the early evolution of extant cats and their sabre-toothed relatives: [version 2; peer review: 2 approved]

      Westbury, Michael Vincent, Barnett, R., Sandoval-Velasco, Marcela, Gower, Graham, Vieira, Filipe Garrett, de Manuel, M., Hansen, Anders Johannes, Yamaguchi, N., Werdelin, L., Marques-Bonet, T., Gilbert, M Thomas P & Lorenzen, Eline, 2021, In: Open Research Europe. 1, 16 p., 25.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      A genomic exploration of the early evolution of extant cats and their sabre-toothed relatives: [version 1; peer review: 2 approved]

      Westbury, Michael Vincent, Barnett, R., Sandoval-Velasco, Marcela, Gower, Graham, Vieira, Filipe Garrett, de Manuel, M., Hansen, Anders Johannes, Yamaguchi, N., Werdelin, L., Marques-Bonet, T., Gilbert, M Thomas P & Lorenzen, Eline, 2021, In: Open Research Europe. 1, 15 p., 25.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      A towering genome: Experimentally validated adaptations to high blood pressure and extreme stature in the giraffe

      Liu, C., Gao, J., Cui, X., Li, Z., Chen, L., Yuan, Y., Zhang, Y., Mei, L., Zhao, L., Cai, D., Hu, M., Zhou, B., Li, Z., Qin, T., Si, H., Li, G., Lin, Z., Xu, Y., Zhu, C., Yin, Y. & 9 others, Zhang, C., Xu, W., Li, Q., Wang, K., Gilbert, M Thomas P, Heller, Rasmus, Wang, W., Huang, J. & Qiu, Q., 2021, In: Science Advances. 7, 12, 13 p., eabe9459.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      An integrated morphological-molecular approach reveals new insights on the systematics of the octocoral Telestula humilis (Thomson, 1927) (Octocorallia: Alcyonacea : Clavulariidae)

      Poliseno, A., Altuna, A., Puetz, Lara Christine, Mak, Sarah Siu Tze, Rios, P., Petroni, E., McFadden, C. S., Sørensen, Martin Vinther & Gilbert, M Thomas P, 2021, In: Invertebrate Systematics. 35, 3, p. 261-281 21 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      Ancient and modern genomes unravel the evolutionary history of the rhinoceros family

      Liu, S., Westbury, M. V., Dussex, N., Mitchell, K. J., Sinding, M. H. S., Heintzman, P. D., Duchêne, D. A., Kapp, J. D., von Seth, J., Heiniger, H., Sánchez-Barreiro, F., Margaryan, A., André-Olsen, R., De Cahsan, B., Meng, G., Yang, C., Chen, L., van der Valk, T., Moodley, Y., Rookmaaker, K. & 19 others, Bruford, M. W., Ryder, O., Steiner, C., Sonsbeek, L. G. R. B., Vartanyan, S., Guo, C., Cooper, A., Kosintsev, P., Kirillova, I., Lister, A. M., Marques-Bonet, T., Gopalakrishnan, Shyam, Dunn, Rob, Lorenzen, Eline, Shapiro, B., KU, thw266, Antoine, P. O., Dalén, L. & Gilbert, M Thomas P, 2021, In: Cell. 184, 19, p. 4874-4885.e16

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      Ancient and modern stickleback genomes reveal the demographic constraints on adaptation

      Kirch, M., Romundset, A., Gilbert, M Thomas P, Jones, F. C. & Foote, A. D., 2021, In: Current Biology. 31, 9, p. 2027-2036.e8 18 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      Ancient microRNA profiles of 14,300-yr-old canid samples confirm taxonomic origin and provide glimpses into tissue-specific gene regulation from the Pleistocene

      Fromm, B., Tarbier, M., Smith, O., Marmol-Sanchez, E., Dalen, L., Gilbert, M Thomas P & Friedlander, M. R., 2021, In: RNA. 27, 3, p. 324-334 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      Contrasting genetic signal of recolonization after rainforest fragmentation in African trees with different dispersal abilities

      Piñeiro, R., Hardy, O. J., Tovar, C., Gopalakrishnan, Shyam, Vieira, Filipe Garrett & Gilbert, M Thomas P, 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 27, 9 p., e2013979118.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. Published

      Dire wolves were the last of an ancient New World canid lineage

      Perri, A. R., Mitchell, K. J., Mouton, A., Alvarez-Carretero, S., Hulme-Beaman, A., Haile, J., Jamieson, A., Meachen, J., Lin, A. T., Schubert, B. W., Ameen, C., Antipina, E. E., Bover, P., Brace, S., Carmagnini, A., Carøe, C., Samaniego Castruita, J. A., Chatters, J. C., Dobney, K., dos Reis, M. & 29 others, Evin, A., Gaubert, P., Gopalakrishnan, Shyam, Gower, Graham, Heiniger, H., Helgen, K. M., Kapp, J., Kosintsev, P. A., Linderholm, A., Ozga, A. T., Presslee, S., Salis, A. T., Saremi, N. F., Shew, C., Skerry, K., Taranenko, D. E., Thompson, M., Sablin, M. V., Kuzmin, Y. V., Collins, Matthew James, Sinding, M. S., Gilbert, M Thomas P, Stone, A. C., Shapiro, B., Van Valkenburgh, B., Wayne, R. K., Larson, G., Cooper, A. & Frantz, L. A. F., 2021, In: Nature. 591, p. 87-91

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      Evolutionary history of the extinct Sardinian dhole

      Ciucani, M. M., Jensen, J. K., Sinding, M. S., Smith, O., Lucenti, S. B., Rosengren, E., Rook, L., Tuveri, C., Arca, M., Cappellini, Enrico, Galaverni, M., Randi, E., Guo, C., KU, thw266, Sicheritz-Pontén, Thomas, Dalén, L., Gilbert, M Thomas P & Gopalakrishnan, Shyam, 2021, In: Current Biology. 31, 24, p. 5571-5579.e6 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      Extended survival of Pleistocene Siberian wolves into the early 20th century on the island of Honshu

      Niemann, Jonas, Gopalakrishnan, Shyam, Yamaguchi, N., Ramos Madrigal, Jazmin, Wales, N., Gilbert, M Thomas P & Sinding, M. S., 2021, In: iScience. 24, 25 p., 101904.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      Feasibility of applying shotgun metagenomic analyses to grapevine leaf, rhizosphere and soil microbiome characterisation

      Azevedo-Silva, D., Rasmussen, Jacob Agerbo, Carneiro, M., Gilbert, M Thomas P & Azevedo, H., 2021, In: Australian Journal of Grape and Wine Research. 27, 4, p. 519-526 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      Fine-tuning biodiversity assessments: A framework to pair eDNA metabarcoding and morphological approaches

      Pereira, Catia Lucio, Gilbert, M Thomas P, Araújo, M. B. & Matias, M. G., 2021, In: Methods in Ecology and Evolution. 12, 12, p. 2397-2409 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts

      Rasmussen, Jacob Agerbo, Villumsen, Kasper Rømer, Duchene, David, Puetz, Lara Christine, Delmont, T. O., Sveier, H., Jørgensen, Louise von Gersdorff, Præbel, K., Martin, M. D., Bojesen, Anders Miki, Gilbert, M Thomas P, Kristiansen, Karsten & Limborg, Morten Tønsberg, 2021, In: Communications Biology. 4, 10 p., 579.

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. Published

      Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations

      von Seth, J., Dussex, N., Diez-del-Molino, D., van der Valk, T., Kutschera, V. E., Kierczak, M., Steiner, C. C., Liu, S., Gilbert, M. T. P., Sinding, M-H. S., Prost, S., Guschanski, K., Nathan, S. K. S. S., Brace, S., Chan, Y. L., Wheat, C. W., Skoglund, P., Ryder, O. A., Goossens, B., Gotherstrom, A. & 1 others, Dalen, L., 2021, In: Nature Communications. 12, 1, 11 p., 2393.

      Research output: Contribution to journal › Journal article › Research › peer-review

    27. Published

      Gut Microbiota Linked with Reduced Fear of Humans in Red Junglefowl Has Implications for Early Domestication

      Puetz, Lara Christine, Delmont, T. O., Aizpurua Arrieta, Ostaizka, Guo, C., KU, thw266, Katajamaa, R., Jensen, P. & Gilbert, M Thomas P, 2021, In: Advanced Genetics. 2, 4, 12 p., 2100018.

      Research output: Contribution to journal › Journal article › Research › peer-review

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    ID: 12980