Tom Gilbert

Tom Gilbert

Professor

Member of:

    ORCID: 0000-0002-5805-7195

    Publication year:
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    76 - 100 out of 441Page size: 25
    1. 2021
    2. Published

      Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum)

      Sánchez-Barreiro, F., Gopalakrishnan, Shyam, Ramos Madrigal, Jazmin, Westbury, Michael Vincent, de Manuel, M., Margaryan, Ashot, Ciucani, M. M., Vieira, Filipe Garrett, Patramanis, Ioannis, Kalthoff, D. C., Timmons, Z., Sicheritz-Pontén, Thomas, Dalén, L., Ryder, O. A., KU, thw266, Marques-Bonet, T., Moodley, Y. & Gilbert, M Thomas P, 2021, In: Molecular Ecology. 30, 23, p. 6355-6369 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    3. Published

      Identification of African swine fever virus transcription within peripheral blood mononuclear cells of acutely infected pigs

      Olesen, A. S., Kodama, M., Lohse, L., Accensi, F., Rasmussen, T. B., Lazov, Christina Marie, Limborg, Morten Tønsberg, Gilbert, M Thomas P, Bøtner, A. & Belsham, Graham John, 2021, In: Viruses. 13, 11, 2333.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos

      Sinding, M. S., Ciucani, M. M., Ramos Madrigal, Jazmin, Carmagnini, A., Rasmussen, Jacob Agerbo, Feng, S., Chen, G., Vieira, Filipe Garrett, Mattiangeli, V., Ganjoo, R. K., Larson, G., Sicheritz-Pontén, Thomas, Petersen, Bent, Frantz, L., Gilbert, M Thomas P & Bradley, D. G., 2021, In: iScience. 24, 11, 18 p., 103226.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Leech blood-meal invertebrate-derived DNA reveals differences in Bornean mammal diversity across habitats

      Drinkwater, R., Jucker, T., Potter, J. H. T., Swinfield, T., Coomes, D. A., Slade, E. M., Gilbert, M Thomas P, Lewis, O. T., Bernard, H., Struebig, M. J., Clare, E. L. & Rossiter, S. J., 2021, In: Molecular Ecology. 30, 13, p. 3299-3312 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      Mitochondrial genomes of Danish vertebrate species generated for the national DNA reference database, DNAmark

      Margaryan, Ashot, Noer, Christina, Richter, S. R., Restrup, M. E., Bülow‐hansen, J. L., Leerhøi, Frederik, Arfaoui, Emilia Marie Rolander, Gopalakrishnan, Shyam, Carøe, C., Gilbert, M Thomas P & Bohmann, Kristine, 2021, In: Environmental DNA. 3, 2, p. 472-480

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal

      Feuerborn, T. R., Carmagnini, A., Losey, R. J., Nomokonova, T., Askeyev, A., Askeyev, I., Askeyev, O., Antipina, E. E., Appelt, M., Bachura, O. P., Beglane, F., Bradley, D. G., Daly, K. G., Gopalakrishnan, S., Gregersen, K. M., Guo, C., Gusev, A. V., Jones, C., Kosintsev, P. A., Kuzmin, Y. V. & 17 others, Mattiangeli, V., Perri, A. R., Plekhanov, A. V., Ramos Madrigal, Jazmin, Schmidt, A. L., Shaymuratova, D., Smith, O., Yavorskaya, L. V., KU, thw266, Willerslev, Eske, Meldgaard, Morten, Gilbert, M Thomas P, Larson, G., Dalén, L., Hansen, Anders Johannes, Sinding, Mikkel Holger Strander & Frantz, L., 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 39, e2100338118.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      Molecular parallelisms between pigmentation in the avian iris and the integument of ectothermic vertebrates

      Andrade, P., Gazda, M. A., Araújo, P. M., Afonso, S., Rasmussen, Jacob Agerbo, Marques, C. I., Lopes, R. J., Gilbert, M Thomas P & Carneiro, M., 2021, In: PLOS Genetics. 17, 2, 16 p., 1009404.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      Non-invasive surveys of mammalian viruses using environmental DNA

      Alfano, N., Dayaram, A., Axtner, J., Tsangaras, K., Kampmann, Marie-Louise, Mohamed, A., Wong, S. T., Gilbert, M Thomas P, Wilting, A. & Greenwood, A. D., 2021, In: Methods in Ecology and Evolution. 12, 10, p. 1941-1952

      Research output: Contribution to journal › Journal article › Research › peer-review

    10. Published

      Rapid discovery of novel prophages using biological feature engineering and machine learning

      Sirén, K., Millard, A., Petersen, Bent, Gilbert, M Thomas P, Clokie, M. R. J. & Sicheritz-Pontén, Thomas, 2021, In: NAR Genomics and Bioinformatics. 3, 1, 10 p., lqaa109.

      Research output: Contribution to journal › Journal article › Research › peer-review

    11. Published

      Reconsidering domestication from a process archaeology perspective

      Bogaard, A., Allaby, R., Arbuckle, B. S., Bendrey, R., Crowley, S., Cucchi, T., Denham, T., Frantz, L., Fuller, D., Gilbert, M Thomas P, Karlsson, E., Manin, A., Marshall, F., Mueller, N., Peters, J., Stépanoff, C., Weide, A. & Larson, G., 2021, In: World Archaeology. 53, 1, p. 56-77 22 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      Runs of homozygosity in killer whale genomes provide a global record of demographic histories

      Foote, A. D., Hooper, R., Alexander, A., Baird, R. W., Baker, C. S., Ballance, L., Barlow, J., Brownlow, A., Collins, T., Constantine, R., Dalla Rosa, L., Davison, N. J., Durban, J. W., Esteban, R., Excoffier, L., Martin, S. L. F., Forney, K. A., Gerrodette, T., Gilbert, M. T. P., Guinet, C. & 14 others, Hanson, M. B., Li, S., Martin, M. D., Robertson, K. M., Samarra, F. I. P., de Stephanis, R., Tavares, S. B., Tixier, P., Totterdell, J. A., Wade, P., Wolf, J. B. W., Fan, G., Zhang, Y. & Morin, P. A., 2021, In: Molecular Ecology. 30, 23, p. 6162-6177 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      Salmon gut microbiota correlates with disease infection status: potential for monitoring health in farmed animals

      Bozzi, D., Rasmussen, Jacob Agerbo, Carøe, C., Sveier, H., Nordøy, K., Gilbert, M Thomas P & Limborg, Morten Tønsberg, 2021, In: BMC Animal Microbiome. 3, 1, 17 p., 30.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      The genetic impact of an Ebola outbreak on a wild gorilla population

      Fontsere, C., Frandsen, P., Hernandez-Rodriguez, J., Niemann, Jonas, Scharff-Olsen, Camilla Hjorth, Vallet, D., Le Gouar, P., Ménard, N., Navarro, A., Siegismund, Hans Redlef, Hvilsom, C., Gilbert, M Thomas P, Kuhlwilm, M., Hughes, D. & Marques-Bonet, T., 2021, In: BMC Genomics. 22, 12 p., 735.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      The genome sequence of the grey wolf, Canis lupus Linnaeus 1758

      Sinding, Mikkel Holger Strander, Gopalakrishnan, Shyam, Raundrup, K., Dalén, L., Threlfall, J., Gilbert, M Thomas P, Darwin Tree of Life Barcoding collective, D. T. O. L. B. C., Wellcome Sanger Institute Tree of Life programme, W. S. I. T. O. L. P., Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, W. S. I. S. O. D. P. C. & Tree of Life Core Informatics collective, Darwin Tree of Life Consortium, T. O. L. C. I. C. D. T. O. L. C., 2021, In: Wellcome Open Research. 6, 12 p., 310.

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      The germline mutational process in rhesus macaque and its implications for phylogenetic dating

      Bergeron, Lucie Adrienne, Besenbacher, S., Bakker, J., Zheng, J., Li, P., Antunes Pacheco, George, Sinding, Mikkel Holger Strander, Kamilari, M., Gilbert, M Thomas P, Schierup, M. H. & KU, thw266, 2021, In: GigaScience. 10, 5, 14 p., giab029.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      The role of the gut microbiota in the dietary niche expansion of fishing bats

      Aizpurua Arrieta, Ostaizka, Jessen, Lasse Nyholm, Morris, E., Chaverri, G., Montalvo, L. G. H., Flores-Martinez, J. J., Lin, A., Razgour, O., Gilbert, M Thomas P & Alberdi, Antton, 2021, In: BMC Animal Microbiome. 3, 14 p., 76.

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      Towards complete and error-free genome assemblies of all vertebrate species

      Rhie, A., McCarthy, S. A., Fedrigo, O., Damas, J., Formenti, G., Koren, S., Uliano-Silva, M., Chow, W., Fungtammasan, A., Kim, J., Lee, C., Ko, B. J., Chaisson, M., Gedman, G. L., Cantin, L. J., Thibaud-Nissen, F., Haggerty, L., Bista, I., Smith, M., Haase, B. & 107 others, Mountcastle, J., Winkler, S., Paez, S., Howard, J., Vernes, S. C., Lama, T. M., Grutzner, F., Warren, W. C., Balakrishnan, C. N., Burt, D., George, J. M., Biegler, M. T., Iorns, D., Digby, A., Eason, D., Robertson, B., Edwards, T., Wilkinson, M., Turner, G., Meyer, A., Kautt, A. F., Franchini, P., Detrich, H. W., Svardal, H., Wagner, M., Naylor, G. J. P., Pippel, M., Malinsky, M., Mooney, M., Simbirsky, M., Hannigan, B. T., Pesout, T., Houck, M., Misuraca, A., Kingan, S. B., Hall, R., Kronenberg, Z., Sović, I., Dunn, C., Ning, Z., Hastie, A., Lee, J., Selvaraj, S., Green, R. E., Putnam, N. H., Gut, I., Ghurye, J., Garrison, E., Sims, Y., Collins, J., Pelan, S., Torrance, J., Tracey, A., Wood, J., Dagnew, R. E., Guan, D., London, S. E., Clayton, D. F., Mello, C. V., Friedrich, S. R., Lovell, P. V., Osipova, E., Al-Ajli, F. O., Secomandi, S., Kim, H., Theofanopoulou, C., Hiller, M., Zhou, Y., Harris, R. S., Makova, K. D., Medvedev, P., Hoffman, J., Masterson, P., Clark, K., Martin, F., Howe, K., Flicek, P., Walenz, B. P., Kwak, W., Clawson, H., Diekhans, M., Nassar, L., Paten, B., Kraus, R. H. S., Crawford, A. J., Gilbert, M Thomas P, KU, thw266, Venkatesh, B., Murphy, R. W., Koepfli, K., Shapiro, B., Johnson, W. E., Di Palma, F., Marques-Bonet, T., Teeling, E. C., Warnow, T., Graves, J. M., Ryder, O. A., Haussler, D., O’Brien, S. J., Korlach, J., Lewin, H. A., Howe, K., Myers, E. W., Durbin, R., Phillippy, A. M. & Jarvis, E. D., 2021, In: Nature. 592, 7856, p. 737-746 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      eDNA‐based biomonitoring at an experimental German vineyard to characterize how management regimes shape ecosystem diversity

      Rasmussen, Jacob Agerbo, Nielsen, M., Mak, Sarah Siu Tze, Döring, J., Klincke, F., Gopalakrishnan, Shyam, Dunn, Rob, Kauer, R. & Gilbert, M Thomas P, 2021, In: Environmental DNA. 3, 1, p. 70-82 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    20. 2020
    21. Published

      Using paleo-archives to safeguard biodiversity under climate change

      Fordham, D. A., Jackson, S. T., Brown, S. C., Huntley, B., Dahl-Jensen, Dorthe, Gilbert, M Thomas P, Otto-Bliesner, B., Svensson, Anders, Theodoridis, S., Wilmshurst, J. M., Buettel, J. C., Canteri, Elisabetta, McDowell, M., Orlando, L. A. A., Pilowsky, Julia Aaron, Rahbek, Carsten & Nogues, David Bravo, 28 Aug 2020, In: Science. 369, 6507, p. 1072-1083 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      A draft genome sequence of the elusive giant squid, Architeuthis dux

      da Fonseca, R. R., Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, Â. M., Barrio-Hernandez, I., Hoving, H-J., Tafur-Jimenez, R., Chu, C., Frazão, B., Petersen, B., Peñaloza, F., Musacchia, F., Alexander, G. C. & 24 others, Osório, H., Winkelmann, I., Simakov, O., Rasmussen, Simon, Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., KU, thw266, Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Pontén, Thomas, Nielsen, Rasmus & Gilbert, M Thomas P, 2020, In: GigaScience. 9, 1, 12 p., giz152.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      Adaptive venom evolution and toxicity in octopods is driven by extensive novel gene formation, expansion, and loss

      Whitelaw, B. L., Cooke, I. R., Finn, J., Rodrigues da Fonseca, Rute Andreia, Ritschard, E. A., Gilbert, M Thomas P, Simakov, O. & Strugnell, J. M., 2020, In: GigaScience. 9, 11, 15 p., giaa120.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia

      Loog, L., Thalmann, O., Sinding, M. H. S., Schuenemann, V. J., Perri, A., Germonpré, M., Bocherens, H., Witt, K. E., Samaniego Castruita, J. A., Velasco, M. S., Lundstrøm, I. K. C., Wales, N., Sonet, G., Frantz, L., Schroeder, H., Budd, J., Jimenez, E. L., Fedorov, S., Gasparyan, B., Kandel, A. W. & 16 others, Lázničková-Galetová, M., Napierala, H., Uerpmann, H. P., Nikolskiy, P. A., Pavlova, E. Y., Pitulko, V. V., Herzig, K., Malhi, R. S., Willerslev, Eske, Hansen, Anders Johannes, Dobney, K., Gilbert, M Thomas P, Krause, J., Larson, G., Eriksson, A. & Manica, A., 2020, In: Molecular Ecology. 29, 9, p. 1596-1610 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Arctic-adapted dogs emerged at the Pleistocene-Holocene transition

      Sinding, M. H. S., Gopalakrishnan, S., Ramos-Madrigal, J., de Manuel, M., Pitulko, V. V., Kuderna, L., Feuerborn, T. R., Frantz, L. A. F., Vieira, F. G., Niemann, J., Samaniego Castruita, J. A., Carøe, C., Andersen-Ranberg, E. U., Jordan, P. D., Pavlova, E. Y., Nikolskiy, P. A., Kasparov, A. K., Ivanova, V. V., Willerslev, E., Skoglund, P. & 15 others, Fredholm, Merete, Wennerberg, S. E., Heide-Jørgensen, M. P., Dietz, R., Sonne, C., Meldgaard, Morten, Dalén, L., Larson, G., Petersen, Bent, Sicheritz-Pontén, Thomas, Bachmann, L., Wiig, Ø., Marques-Bonet, T., Hansen, Anders Johannes & Gilbert, M Thomas P, 2020, In: Science (New York, N.Y.). 368, 6498, p. 1495-1499 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    26. Published

      Beyond DNA barcoding: The unrealized potential of genome skim data in sample identification

      Bohmann, Kristine, Mirarab, S., Bafna, V. & Gilbert, M Thomas P, 2020, In: Molecular Ecology. 29, 14, p. 2521-2534

      Research output: Contribution to journal › Journal article › Research › peer-review

    27. Published

      Bone biodeterioration - The effect of marine and terrestrial depositional environments on early diagenesis and bone bacterial community

      Eriksen, A. M. H., Nielsen, Tue Kjærgaard, Matthiesen, H., Carøe, C., Hansen, Lars Hestbjerg, Gregory, D. J., Turner-Walker, G., Collins, Matthew James & Gilbert, M Thomas P, 2020, In: PLoS ONE. 15, 10 October, 24 p., e0240512.

      Research output: Contribution to journal › Journal article › Research › peer-review

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    ID: 12980