Transcriptome analysis of root-knot nematode (Meloidogyne incognita)-infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance responses

Research output: Contribution to journal › Journal article › Research › peer-review

Standard

Transcriptome analysis of root-knot nematode (Meloidogyne incognita)-infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance responses. / Shukla, Neha; Yadav, Rachita; Kaur, Pritam; Rasmussen, Simon; Goel, Shailendra; Agarwal, Manu; Jagannath, Arun; Gupta, Ramneek; Kumar, Amar.

In: Molecular Plant Pathology, Vol. 19, No. 3, 2018, p. 615-633.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

Shukla, N, Yadav, R, Kaur, P, Rasmussen, S, Goel, S, Agarwal, M, Jagannath, A, Gupta, R & Kumar, A 2018, 'Transcriptome analysis of root-knot nematode (Meloidogyne incognita)-infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance responses', Molecular Plant Pathology, vol. 19, no. 3, pp. 615-633. https://doi.org/10.1111/mpp.12547

APA

Shukla, N., Yadav, R., Kaur, P., Rasmussen, S., Goel, S., Agarwal, M., Jagannath, A., Gupta, R., & Kumar, A. (2018). Transcriptome analysis of root-knot nematode (Meloidogyne incognita)-infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance responses. Molecular Plant Pathology, 19(3), 615-633. https://doi.org/10.1111/mpp.12547

Vancouver

Shukla N, Yadav R, Kaur P, Rasmussen S, Goel S, Agarwal M et al. Transcriptome analysis of root-knot nematode (Meloidogyne incognita)-infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance responses. Molecular Plant Pathology. 2018;19(3):615-633. https://doi.org/10.1111/mpp.12547

Author

Shukla, Neha ; Yadav, Rachita ; Kaur, Pritam ; Rasmussen, Simon ; Goel, Shailendra ; Agarwal, Manu ; Jagannath, Arun ; Gupta, Ramneek ; Kumar, Amar. / Transcriptome analysis of root-knot nematode (Meloidogyne incognita)-infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance responses. In: Molecular Plant Pathology. 2018 ; Vol. 19, No. 3. pp. 615-633.

Bibtex

@article{3e78e7bac398407caa5d4b1890fca3d7,
title = "Transcriptome analysis of root-knot nematode (Meloidogyne incognita)-infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance responses",
abstract = "Root-knot nematodes (RKNs, Meloidogyne incognita) are economically important endoparasites with a wide host range. We used a comprehensive transcriptomic approach to investigate the expression of both tomato and RKN genes in tomato roots at five infection time intervals from susceptible plants and two infection time intervals from resistant plants, grown under soil conditions. Differentially expressed genes during susceptible (1827, tomato; 462, RKN) and resistance (25, tomato; 160, RKN) interactions were identified. In susceptible responses, tomato genes involved in cell wall structure, development, primary and secondary metabolite, and defence signalling pathways, together with RKN genes involved in host parasitism, development and defence, are discussed. In resistance responses, tomato genes involved in secondary metabolite and hormone-mediated defence responses, together with RKN genes involved in starvation stress-induced apoptosis, are discussed. In addition, 40 novel differentially expressed RKN genes encoding secretory proteins were identified. Our findings provide novel insights into the temporal regulation of genes involved in various biological processes from tomato and RKN simultaneously during susceptible and resistance responses, and reveal the involvement of a complex network of biosynthetic pathways during disease development.",
keywords = "Animals, Gene Expression Regulation, Plant/genetics, Host-Parasite Interactions/genetics, Lycopersicon esculentum/genetics, Plant Diseases/genetics, Plant Roots/genetics, Transcriptome/genetics, Tylenchoidea/pathogenicity",
author = "Neha Shukla and Rachita Yadav and Pritam Kaur and Simon Rasmussen and Shailendra Goel and Manu Agarwal and Arun Jagannath and Ramneek Gupta and Amar Kumar",
note = "{\textcopyright} 2017 BSPP AND JOHN WILEY & SONS LTD.",
year = "2018",
doi = "10.1111/mpp.12547",
language = "English",
volume = "19",
pages = "615--633",
journal = "Molecular Plant Pathology",
issn = "1464-6722",
publisher = "Wiley-Blackwell",
number = "3",

}

RIS

TY - JOUR

T1 - Transcriptome analysis of root-knot nematode (Meloidogyne incognita)-infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance responses

AU - Shukla, Neha

AU - Yadav, Rachita

AU - Kaur, Pritam

AU - Rasmussen, Simon

AU - Goel, Shailendra

AU - Agarwal, Manu

AU - Jagannath, Arun

AU - Gupta, Ramneek

AU - Kumar, Amar

N1 - © 2017 BSPP AND JOHN WILEY & SONS LTD.

PY - 2018

Y1 - 2018

N2 - Root-knot nematodes (RKNs, Meloidogyne incognita) are economically important endoparasites with a wide host range. We used a comprehensive transcriptomic approach to investigate the expression of both tomato and RKN genes in tomato roots at five infection time intervals from susceptible plants and two infection time intervals from resistant plants, grown under soil conditions. Differentially expressed genes during susceptible (1827, tomato; 462, RKN) and resistance (25, tomato; 160, RKN) interactions were identified. In susceptible responses, tomato genes involved in cell wall structure, development, primary and secondary metabolite, and defence signalling pathways, together with RKN genes involved in host parasitism, development and defence, are discussed. In resistance responses, tomato genes involved in secondary metabolite and hormone-mediated defence responses, together with RKN genes involved in starvation stress-induced apoptosis, are discussed. In addition, 40 novel differentially expressed RKN genes encoding secretory proteins were identified. Our findings provide novel insights into the temporal regulation of genes involved in various biological processes from tomato and RKN simultaneously during susceptible and resistance responses, and reveal the involvement of a complex network of biosynthetic pathways during disease development.

AB - Root-knot nematodes (RKNs, Meloidogyne incognita) are economically important endoparasites with a wide host range. We used a comprehensive transcriptomic approach to investigate the expression of both tomato and RKN genes in tomato roots at five infection time intervals from susceptible plants and two infection time intervals from resistant plants, grown under soil conditions. Differentially expressed genes during susceptible (1827, tomato; 462, RKN) and resistance (25, tomato; 160, RKN) interactions were identified. In susceptible responses, tomato genes involved in cell wall structure, development, primary and secondary metabolite, and defence signalling pathways, together with RKN genes involved in host parasitism, development and defence, are discussed. In resistance responses, tomato genes involved in secondary metabolite and hormone-mediated defence responses, together with RKN genes involved in starvation stress-induced apoptosis, are discussed. In addition, 40 novel differentially expressed RKN genes encoding secretory proteins were identified. Our findings provide novel insights into the temporal regulation of genes involved in various biological processes from tomato and RKN simultaneously during susceptible and resistance responses, and reveal the involvement of a complex network of biosynthetic pathways during disease development.

KW - Animals

KW - Gene Expression Regulation, Plant/genetics

KW - Host-Parasite Interactions/genetics

KW - Lycopersicon esculentum/genetics

KW - Plant Diseases/genetics

KW - Plant Roots/genetics

KW - Transcriptome/genetics

KW - Tylenchoidea/pathogenicity

U2 - 10.1111/mpp.12547

DO - 10.1111/mpp.12547

M3 - Journal article

C2 - 28220591

VL - 19

SP - 615

EP - 633

JO - Molecular Plant Pathology

JF - Molecular Plant Pathology

SN - 1464-6722

IS - 3

ER -

ID: 214022094