Rasmus Nielsen

Rasmus Nielsen

Professor

ORCID: 0000-0003-0513-6591

Publication year:
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26 - 50 out of 255Page size: 25
  1. 2021

  2. The distribution of waiting distances in ancestral recombination graphs

    Deng, Y., Song, Y. S. & Nielsen, Rasmus, 2021, In: Theoretical Population Biology. 141, p. 34-43 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. The CALeDNA program: Citizen scientists and researchers inventory California's biodiversity

    Meyer, R. S., Ramos, M. M., Lin, M., Schweizer, T. M., Gold, Z., Ramos, D. R., Shirazi, S., Kandlikar, G., Kwan, W. Y., Curd, E. E., Freise, A., Parker, J. M., Sexton, J. P., Wetzer, R., Pentcheff, N. D., Wall, A. R., Pipes, L., Garcia- Vedrenne, A., Mejia, M. P., Moore, T. & 12 others, Orland, C., Ballare, K. M., Worth, A., Beraut, E., Aronson, E. L., Nielsen, Rasmus, Lewin, H. A., Barber, P. H., Wall, J., Kraft, N., Shapiro, B. & Wayne, R. K., 2021, In: California Agriculture. 75, 1, p. 20-32 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Assessing Uncertainty in the Rooting of the SARS-CoV-2 Phylogeny

    Pipes, L., Wang, H., Huelsenbeck, J. P. & Nielsen, Rasmus, 2021, In: Molecular Biology and Evolution. 38, 4, p. 1537-1543 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Convergent evolution of increased urine-concentrating ability in desert mammals

    Rocha, J. L., Brito, J. C., Nielsen, Rasmus & Godinho, R., 2021, In: Mammal Review. 51, 4, p. 482-491 10 p.

    Research output: Contribution to journal › Review › Research › peer-review

  6. Published

    Life in Deserts: The Genetic Basis of Mammalian Desert Adaptation

    Rocha, J. L., Godinho, R., Brito, J. C. & Nielsen, Rasmus, 2021, In: Trends in Ecology & Evolution. 36, 7, p. 637-650

    Research output: Contribution to journal › Review › Research › peer-review

  7. Disentangling selection on genetically correlated polygenic traits via whole-genome genealogies

    Stern, A. J., Speidel, L., Zaitlen, N. A. & Nielsen, Rasmus, 2021, In: American Journal of Human Genetics. 108, 2, p. 219-239 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. The genomics of mimicry: Gene expression throughout development provides insights into convergent and divergent phenotypes in a Müllerian mimicry system

    Stuckert, A. M. M., Chouteau, M., McClure, M., LaPolice, T. M., Linderoth, T., Nielsen, Rasmus, Summers, K. & MacManes, M. D., 2021, In: Molecular Ecology. 30, 16, p. 4039-4061 23 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Inferring Adaptive Introgression Using Hidden Markov Models

    Svedberg, J., Shchur, V., Reinman, S., Nielsen, Rasmus & Corbett-Detig, R., 2021, In: Molecular Biology and Evolution. 38, 5, p. 2152-2165 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Synonymous mutations and the molecular evolution of SARS-CoV-2 origins

    Wang, H., Pipes, L. & Nielsen, Rasmus, 2021, In: Virus Evolution. 7, 1, 11 p., veaa098.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    The history and evolution of the Denisovan-EPAS1 haplotype in Tibetans

    Zhang, X., Witt, K. E., Banuelos, M. M., Ko, A., Yuan, K., Xu, S., Nielsen, Rasmus & Huerta-Sanchez, E., 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 22, 9 p., 2020803118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. 2020

  13. Pronounced somatic bottleneck in mitochondrial DNA of human hair

    Barrett, A., Arbeithuber, B., Zaidi, A., Wilton, P., Paul, I. M., Nielsen, Rasmus & Makova, K. D., 2020, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 375, 1790, 11 p., 20190175.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Phenotypic Convergence Is Not Mirrored at the Protein Level in a Lizard Adaptive Radiation

    Corbett-Detig, R. B., Russell, S. L., Nielsen, Rasmus & Losos, J., 2020, In: MOLECULAR BIOLOGY AND EVOLUTION . 37, 6, p. 1604-1614 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    The genetic architecture of sporadic and multiple consecutive miscarriage

    Laisk, T., Soares, A. L. G., Ferreira, T., Painter, J. N., Censin, J. C., Laber, S., Bacelis, J., Chen, C. Y., Lepamets, M., Lin, K., Liu, S., Millwood, I. Y., Ramu, A., Southcombe, J., Andersen, M. S., Yang, L., Becker, C. M., Børglum, A. D., Gordon, S. D., Bybjerg-Grauholm, J. & 35 others, Helgeland, Ø., Hougaard, D. M., Jin, X., Johansson, S., Juodakis, J., Kartsonaki, C., Kukushkina, V., Lind, P. A., Metspalu, A., Montgomery, G. W., Morris, A. P., Mors, O., Mortensen, P. B., Njølstad, P. R., Nordentoft, Merete, Nyholt, D. R., Lippincott, M., Seminara, S., Salumets, A., Snieder, H., Zondervan, K., Werge, Thomas, Chen, Z., Conrad, D. F., Jacobsson, B., Li, L., Martin, N. G., Neale, B. M., Nielsen, Rasmus, Walters, R. G., Granne, I., Medland, S. E., Mägi, R., Lawlor, D. A. & Lindgren, C. M., 2020, In: Nature Communications. 11, 5980.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. A Bayesian Framework for Inferring the Influence of Sequence Context on Point Mutations

    Ling, G., Miller, D., Nielsen, Rasmus & Stern, A., 2020, In: Molecular Biology and Evolution. 37, 3, p. 893-903 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    No statistical evidence for an effect of CCR5-∆32 on lifespan in the UK Biobank cohort

    Maier, R., Akbari, A., Wei, X., Patterson, N., Nielsen, Rasmus & Reich, D., 2020, In: Nature Medicine. 26, 2, p. 178-180 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Population genomics of the Viking world: [incl. correction]

    Margaryan, A., Lawson, D. J., Sikora, M., Racimo, F., Rasmussen, S., Moltke, I., Cassidy, L. M., Jørsboe, E., Ingason, A., Pedersen, M. W., Korneliussen, T., Wilhelmson, H., Buś, M. M., de Barros Damgaard, P., Martiniano, R., Renaud, G., Bhérer, C., Moreno-Mayar, J. V., Fotakis, A. K., Allen, M. & 30 others, Allmäe, R., Molak, M., Cappellini, Enrico, Scorrano, Gabriele, McColl, Hugh, Buzhilova, A., Fox, A., Albrechtsen, Anders, Schütz, B., Skar, B., Arcini, C., Lundstrøm, I., Cheng, J., Stenderup, Jesper Tandberg, Iversen, K. H., Arge, S. V., Ellingvåg, S., Orlando, L., Pentz, P., Jessen, M. D., Pedersen, A., Jørkov, M L S, Lynnerup, Niels, Gilbert, M Thomas P, Allentoft, Morten Erik, Sindbæk, S. M., Kristiansen, K., Nielsen, Rasmus, Werge, Thomas & Willerslev, Eske, 2020, In: Nature. 585, 7825, p. 390-396 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data

    Moreno-Mayar, J. V., Korneliussen, Thorfinn Sand, Dalal, J., Renaud, Gabriel, Albrechtsen, Anders, Nielsen, Rasmus & Malaspinas, A., 2020, In: Bioinformatics. 36, 3, p. 828-841 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Divergence, gene flow, and the origin of leapfrog geographic distributions: The history of colour pattern variation in Phyllobates poison-dart frogs

    Márquez, R., Linderoth, T. P., Mejia-Vargas, D., Nielsen, Rasmus, Amezquita, A. & Kronforst, M. R., 2020, In: Molecular Ecology. 29, 19, p. 3702-3719 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Inferring the ancestry of parents and grandparents from genetic data

    Pei, J., Zhang, Y., Nielsen, Rasmus & Wu, Y., 2020, In: PLOS Computational Biology. 16, 8, 22 p., 1008065.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    On the Distribution of Tract Lengths During Adaptive Introgression

    Shchur, V., Svedberg, J., Medina, P., Corbett-Detig, R. & Nielsen, Rasmus, 2020, In: G3: Genes, Genomes, Genetics (Bethesda). 10, 10, p. 3663-3673 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Massive haplotypes underlie ecotypic differentiation in sunflowers

    Todesco, M., Owens, G. L., Bercovich, N., Légaré, J. S., Soudi, S., Burge, D. O., Huang, K., Ostevik, K. L., Drummond, E. B. M., Imerovski, I., Lande, K., Pascual-Robles, M. A., Nanavati, M., Jahani, M., Cheung, W., Staton, S. E., Muños, S., Nielsen, R., Donovan, L. A., Burke, J. M. & 2 others, Yeaman, S. & Rieseberg, L. H., 2020, In: Nature. 584, 7822, p. 602-607 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Ancient Hybridization with an Unknown Population Facilitated High-Altitude Adaptation of Canids

    Wang, M., Wang, S., Li, Y., Jhala, Y., Thakur, M., Otecko, N. O., Si, J., Chen, H., Shapiro, B., Nielsen, Rasmus, Zhang, Y., Wu, D. & Parsch, J. (ed.), 2020, In: MOLECULAR BIOLOGY AND EVOLUTION . 37, 9, p. 2616-2629

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    A draft genome sequence of the elusive giant squid, Architeuthis dux

    da Fonseca, R. R., Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, Â. M., Barrio-Hernandez, I., Hoving, H-J., Tafur-Jimenez, R., Chu, C., Frazão, B., Petersen, B., Peñaloza, F., Musacchia, F., Alexander, G. C. & 24 others, Osório, H., Winkelmann, I., Simakov, O., Rasmussen, Simon, Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., KU, thw266, Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Pontén, Thomas, Nielsen, Rasmus & Gilbert, M Thomas P, 2020, In: GigaScience. 9, 1, 12 p., giz152.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. 2019
  27. Published

    Parallel adaptation of rabbit populations to myxoma virus

    Alves, J. M., Carneiro, M., Cheng, J. Y., Matos, A. L. D., Rahman, M. M., Loog, L., Campos, P. F., Wales, N., Eriksson, A., Manica, A., Strive, T., Graham, S. C., Afonso, S., Bell, D. J., Belmont, L., Day, J. P., Fuller, S. J., Marchandeau, S., Palmer, W. J., Queney, G. & 8 others, Surridge, A. K., Vieira, Filipe Garrett, McFadden, G., Nielsen, Rasmus, Gilbert, M Thomas P, Esteves, P. J., Ferrand, N. & Jiggins, F. M., 2019, In: Science. 363, 6433

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Temporal genomic contrasts reveal rapid evolutionary responses in an alpine mammal during recent climate change

    Bi, K., Linderoth, T., Singhal, S., Vanderpool, D., Patton, J. L., Nielsen, Rasmus, Moritz, C. & Good, J. M., 2019, In: PLOS Genetics. 15, 5, 22 p., e1008119.

    Research output: Contribution to journal › Journal article › Research › peer-review

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