Tom Gilbert

Tom Gilbert

Professor

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    ORCID: 0000-0002-5805-7195

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    1. Published

      Ancient and historical DNA in conservation policy

      Jensen, E. L., Díez-del-Molino, D., Gilbert, M Thomas P, Bertola, Laura, Borges, F., Cubric-Curik, V., de Navascués, M., Frandsen, P., Heuertz, M., Hvilsom, C., Jiménez-Mena, B., Miettinen, A., Moest, M., Chrzanová Pecnerová, Patrícia, Barnes, I. & Vernesi, C., 2022, In: Trends in Ecology and Evolution. 37, 5, p. 420-429 10 p.

      Research output: Contribution to journal › Review › Research › peer-review

    2. Published

      Stone Age “chewing gum” yields 5,700 yearold human genome and oral microbiome

      Jensen, Theis Zetner Trolle, Niemann, Jonas, Iversen, K. H., Fotaki, Anna Katerina, Gopalakrishan, S., Sinding, Mikkel Holger Strander, Ellegaard, M. R., Allentoft, Morten Erik, Lanigan, Liam Thomas, Taurozzi, Alberto John, Nielsen, Sofie Holtsmark, Dee, M. W., Mortensen, M. N., Christensen, M. C., Sørensen, S. A., Collins, Matthew James, Gilbert, M Thomas P, Sikora, Martin, Rasmussen, Simon & Schroeder, Hannes, 2018, bioRxiv, 32 p.

      Research output: Working paper › Preprint › Research

    3. Published

      A 5700 year-old human genome and oral microbiome from chewed birch pitch

      Jensen, T. Z. T., Niemann, J., Iversen, K. H., Fotakis, A. K., Gopalakrishnan, S., Vågene, Å. J., Pedersen, M. W., Sinding, M-H. S., Ellegaard, M. R., Allentoft, M. E., Lanigan, L. T., Taurozzi, A. J., Nielsen, S. H., Dee, M. W., Mortensen, M. N., Christensen, M. C., Sørensen, S. A., Collins, M. J., Gilbert, M. T. P., Sikora, M. & 2 others, Rasmussen, Simon & Schroeder, Hannes, 2019, In: Nature Communications. 10, 10 p., 5520.

      Research output: Contribution to journal › Journal article › Research › peer-review

    4. Published

      Ancient bacteria show evidence of DNA repair.

      Johnson, S. S., Hebsgaard, M. B., Christensen, T. R., Mastepanov, M., Nielsen, Rasmus, Munch, K., Brand, T., Gilbert, M Thomas P, Zuber, M. T., Bunce, M., Rønn, Regin, Gilichinsky, D., Froese, D. & Willerslev, Eske, 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 36, p. 14401-5 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    5. Published

      Fellow travellers: a concordance of colonization patterns between mice and men in the North Atlantic region

      Jones, E. P., Skirnisson, K., McGovern, T. H., Gilbert, M Thomas P, Willerslev, Eske & Searle, J. B., 2012, In: BMC Evolutionary Biology. 12, 1, 8 p., 35.

      Research output: Contribution to journal › Journal article › Research › peer-review

    6. Published

      Resolving a clinical tuberculosis outbreak using palaeogenomic genome reconstruction methodologies

      Jones, R., Sandoval-Velasco, Marcela, Harris, L. G., Morgan, S., Temple, M., Ruddy, M. C., Williams, R., Perry, M. D., Hitchings, M., Wilkinson, T. S., Humphrey, T., Gilbert, M Thomas P & Davies, A. P., Dec 2019, In: Tuberculosis. 119, 5 p., 101865.

      Research output: Contribution to journal › Journal article › Research › peer-review

    7. Published

      Islands in the ice: detecting past vegetation on Greenlandic nunataks using historical records and sedimentary ancient DNA Meta-barcoding

      Jørgensen, Tina, Kjær, Kurt H., Haile, James Seymour, Rasmussen, M., Boessenkool, S., Andersen, K., Coissac, E., Taberlet, P., Brochmann, C., Orlando, L. A. A., Gilbert, M Thomas P & Willerslev, Eske, 2012, In: Molecular Ecology. 21, 8, p. 1980-1988 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    8. Published

      A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals long-term vegetational stability

      Jørgensen, Tina, Haile, James Seymour, Möller, P., Andreev, A., Boessenkool, S., Rasmussen, M., Kienast, F., Coissac, E., Taberlet, P., Brochmann, C., Bigelow, N. H., Andersen, K., Orlando, L. A. A., Gilbert, M Thomas P & Willerslev, Eske, 2012, In: Molecular Ecology. 21, 8, p. 1989-2003 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    9. Published

      A simple method for the parallel deep sequencing of full influenza A genomes

      Kampmann, Marie-Louise, Fordyce, S. L., Avila Arcos, M. D. C., Rasmussen, M., Willerslev, Eske, Nielsen, L. P. & Gilbert, M Thomas P, Dec 2011, In: Journal of Virological Methods. 178, 1-2, p. 243-248 6 p.

      Research output: Contribution to journal › Letter › Research › peer-review

    10. Published

      Leeches as a source of mammalian viral DNA and RNA - a study in medicinal leeches

      Kampmann, Marie-Louise, Schnell, I. B., Jensen, R. H., Axtner, J., Sander, Adam F. , Hansen, Anders Johannes, Bertelsen, Mads Frost, Greenwood, A. D., Gilbert, M Thomas P & Wilting, A., 2017, In: European Journal of Wildlife Research. 63, 6 p., 36.

      Research output: Contribution to journal › Letter › Research › peer-review

    11. Published

      Macroevolution of complex retroviruses

      Katzourakis, A., Gifford, R. J., Tristem, M., Gilbert, M Thomas P & Pybus, O. G., 2009, In: Science. 325, 5947, p. 1512 1 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    12. Published

      The Vertebrate TLR Supergene Family Evolved Dynamically by Gene Gain/Loss and Positive Selection Revealing a Host-Pathogen Arms Race in Birds

      Khan, I., Maldonado, E., Silva, L., Almeida, D., Johnson, W. E., O'Brien, S. J., KU, thw266, Jarvis, E. D., Gilbert, M Thomas P & Antunes, A., 2019, In: Diversity. 11, 8, 25 p., 131.

      Research output: Contribution to journal › Journal article › Research › peer-review

    13. Published

      Olfactory receptor subgenomes linked with broad ecological adaptations in sauropsida

      Khan, I., Yang, Z., Maldonado, E., Li, C., KU, thw266, Gilbert, M Thomas P, Jarvis, E. D., O'Brien, S. J., Johnson, W. E. & Antunes, A., 2015, In: MOLECULAR BIOLOGY AND EVOLUTION . 32, 11, p. 2832-2843 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    14. Published

      Diabetic cats have decreased gut microbial diversity and a lack of butyrate producing bacteria

      Kieler, Ida Nordang, Osto, M., Hugentobler, L., Puetz, Lara Christine, Gilbert, M Thomas P, Hansen, Torben, Pedersen, Oluf Borbye, Reusch, C. E., Zini, E., Lutz, T. A. & Bjørnvad, Charlotte Reinhard, 2019, In: Scientific Reports. 9, p. 1-13 13 p., 4822.

      Research output: Contribution to journal › Journal article › Research › peer-review

    15. Published

      Recovery of DNA from archaeological insect remains: first results, problems and potential

      King, G. A., Gilbert, M Thomas P, Willerslev, Eske, Collins, M. & Kenward, H., 2009, In: Journal of Archaeological Science. 36, p. 1179-1183

      Research output: Contribution to journal › Journal article › Research › peer-review

    16. Published

      Ancient and modern stickleback genomes reveal the demographic constraints on adaptation

      Kirch, M., Romundset, A., Gilbert, M Thomas P, Jones, F. C. & Foote, A. D., 2021, In: Current Biology. 31, 9, p. 2027-2036.e8 18 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    17. Published

      Multiproxy evidence highlights a complex evolutionary legacy of maize in South America

      Kistler, L., Maezumi, S. Y., Gregorio De Souza, J., Przelomska, N. A. S., Malaquias Costa, F., Smith, O., Loiselle, H., Ramos Madrigal, Jazmin, Wales, N., Ribeiro, E. R., Morrison, R. R., Grimaldo, C., Prous, A. P., Arriaza, B., Gilbert, M Thomas P, De Oliveira Freitas, F. & Allaby, R. G., 14 Dec 2018, In: Science. 362, 6420, p. 1309-1313

      Research output: Contribution to journal › Journal article › Research › peer-review

    18. Published

      Mitogenomic evidence of close relationships between New Zealand's extinct giant raptors and small-sized Australian sister-taxa

      Knapp, M., Thomas, J. E., Haile, James Seymour, Prost, S., Ho, S. Y. W., Dussex, N., Cameron-Christie, S., Kardailsky, O., Barnett, R., Bunce, M., Gilbert, M Thomas P & Scofield, R. P., 2019, In: Molecular Phylogenetics and Evolution. 134, p. 122-128

      Research output: Contribution to journal › Journal article › Research › peer-review

    19. Published

      The Genome 10K Project: a way forward

      Koepfli, K-P., Paten, B., O'Brien, S. J., Antunes, A., Belov, K., Bustamante, C., Castoe, T. A., Clawson, H., Crawford, A. J., Diekhans, M., Distel, D., Durbin, R., Earl, D., Fujita, M. K., Gamble, T., Georges, A., Gemmell, N., Gilbert, M. T. P., Graves, J. M., Green, R. E. & 25 others, Hickey, G., Jarvis, E. D., Johnson, W., Komissarov, A., Korf, I., Kuhn, R., Larkin, D. M., Lewin, H., Lopez, J. V., Ma, J., Marques-Bonet, T., Miller, W., Murphy, R., Pevzner, P., Shapiro, B., Steiner, C., Tamazian, G., Venkatesh, B., Wang, J., Wayne, R., Wiley, E., Yang, H., KU, thw266, Haussler, D. & Ryder, O., 2015, In: Annual Review of Animal Biosciences. 3, p. 57-111 55 p.

      Research output: Contribution to journal › Review › Research › peer-review

    20. Published

      Testosterone in ancient hair from an extinct species

      Koren, L., Matas, D., Pečnerová, P., Dalén, L., Tikhonov, A., Gilbert, M Thomas P, Wynne-edwards, K. E. & Geffen, E., 1 Nov 2018, In: Special Papers in Palaeontology. 61, 6, p. 797-802

      Research output: Contribution to journal › Journal article › Research › peer-review

    21. Published

      Exploring the microbial diversity of novel misos with metagenomics

      Kothe, C. I., Rasmussen, Jacob Agerbo, Mak, Sarah Siu Tze, Gilbert, M Thomas P & Evans, J., 2024, In: Food Microbiology. 117, 9 p., 104372.

      Research output: Contribution to journal › Journal article › Research › peer-review

    22. Published

      Enriching captivity conditions with natural elements does not prevent the loss of wild-like gut microbiota but shapes its compositional variation in two small mammals

      Koziol, Adam Leslie, Larrañaga, Iñaki Odriozola, Jessen, Lasse Nyholm, Leonard, Aoife Mary, San Jose, C., Pauperio, J., Ferreira, C., Hansen, Anders Johannes, Aizpurua Arrieta, Ostaizka, Gilbert, M Thomas P & Alberdi, Antton, 2022, In: MicrobiologyOpen. 11, 5, 19 p., e1318.

      Research output: Contribution to journal › Journal article › Research › peer-review

    23. Published

      A preliminary analysis of the DNA and diet of the extinct Beothuk: a systematic approach to ancient human DNA.

      Kuch, M., Gröcke, D. R., Knyf, M. C., Gilbert, M Thomas P, Younghusband, B., Young, T., Marshall, I., Willerslev, Eske, Stoneking, M. & Poinar, H., 2007, In: American Journal of Physical Anthropology. 132, 4, p. 594-604 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    24. Published

      Late Pleistocene stickleback environmental genomes reveal the chronology of freshwater adaptation

      Laine, J., Mak, Sarah Siu Tze, Martins, N. F. G., Chen, Xihan, Gilbert, M Thomas P, Jones, F. C., Pedersen, Mikkel Winther, Romundset, A. & Foote, A. D., 2024, In: Current Biology. 34, 5, p. 1142-1147 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    25. Published

      Reply to Vigilant and Langergraber: patrilocality in Neandertals is still the most plausible explanation

      Lalueza-Fox, C., Rosas, A., de la Rasilla, M., Gilbert, M Thomas P & Willerslev, Eske, 3 May 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 18, p. E88 1 p.

      Research output: Contribution to journal › Comment/debate › Research

    26. Published

      Genetic evidence for patrilocal mating behavior among Neandertal groups

      Lalueza-Fox, C., Rosas, A., Estalrrich, A., Gigli, E., Campos, P., García-Tabernero, A., García-Vargas, S., Sánchez-Quinto, F., Ramírez, O., Civit, S., Bastir, M., Huguet, R., Santamaría, D., Gilbert, M Thomas P, Willerslev, Eske & la Rasilla, M. D., 4 Jan 2011, In: National Academy of Sciences. Proceedings. 108, 1, p. 250-253 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    27. Published

      Paleogenomics of archaeic hominins

      Lalueza-Fox, C. & Gilbert, M Thomas P, 2011, In: Current Biology. 21, 24, p. R1002-R1009 8 p.

      Research output: Contribution to journal › Review › Research › peer-review

    28. Published

      Current perspectives and the future of domestication studies

      Larson, G., Piperno, D. R., Allaby, R. G., Purugganan, M. D., Andersson, L., Arroyo-Kalin, M., Barton, L., Vigueira, C. C., Denham, T., Dobney, K., Doust, A. N., Gepts, P., Gilbert, M. T. P., Gremillion, K. J., Lucas, L., Lukens, L., Marshall, F. B., Olsen, K. M., Pires, J. C., Richerson, P. J. & 4 others, Rubio de Casas, R., Sanjur, O. I., Thomas, M. G. & Fuller, D. Q., 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 17, p. 6139-6146 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    29. Published

      Plasmodium falciparum erythrocyte membrane protein 1 domain cassettes 8 and 13 are associated with severe malaria in children

      Lavstsen, Thomas, Turner, Louise, Saguti, F., Magistrado, P. A., Rask, T. S., Jespersen, Jakob Schmidt, Wang, Christian William, Berger, S. S., Baraka, V., Marquard, A. M., Seguin-Orlando, A., Willerslev, Eske, Gilbert, M Thomas P, Lusingu, J. P. A. & Theander, Thor Grundtvig, 2012, In: Proceedings of the National Academy of Sciences of the United States of America. 109, 26, p. E1791-E1800 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    30. Published

      The evolutionary history of dogs in the Americas

      Leathlobhair, M. N., Perri, A. R., Irving-Pease, E. K., Witt, K. E., Linderholm, A., Haile, J., Lebrasseur, O., Ameen, C., Blick, J., Boyko, A. R., Brace, S., Cortes, Y. N., Crockford, S. J., Devault, A., Dimopoulos, E. A., Eldridge, M., Enk, J., Gopalakrishnan, S., Gori, K., Grimes, V. & 30 others, Guiry, E., Hansen, Anders Johannes, Hulme-Beaman, A., Johnson, J., Kitchen, A., Kasparov, A. K., Kwon, Y., Nikolskiy, P. A., Lope, C. P., Manin, A., Martin, T., Meyer, M., Myers, K. N., Omura, M., Rouillard, J., Pavlova, E. Y., Sciulli, P., Sinding, M. S., Strakova, A., Ivanova, V. V., Widga, C., Willerslev, Eske, Pitulko, V. V., Barnes, I., Gilbert, M Thomas P, Dobney, K. M., Malhi, R. S., Murchison, E. P., Larson, G. & Frantz, L. A. F., 2018, In: Science. 361, 6397, p. 81-85 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    31. Published

      The Earth BioGenome Project 2020: Starting the clock

      Lewin, H. A., Richards, S., Aiden, E. L., Allende, M. L., Archibald, J. M., Bálint, M., Barker, K. B., Baumgartner, B., Belov, K., Bertorelle, G., Blaxter, M. L., Cai, J., Caperello, N. D., Carlson, K., Castilla-Rubio, J. C., Chaw, S. M., Chen, L., Childers, A. K., Coddington, J. A., Conde, D. A. & 65 others, Corominas, M., Crandall, K. A., Crawford, A. J., DiPalma, F., Durbin, R., Ebenezer, T. E., Edwards, S. V., Fedrigo, O., Flicek, P., Formenti, G., Gibbs, R. A., Gilbert, M Thomas P, Goldstein, M. M., Graves, J. M., Greely, H. T., Grigoriev, I. V., Hackett, K. J., Hall, N., Haussler, D., Helgen, K. M., Hogg, C. J., Isobe, S., Jakobsen, K. S., Janke, A., Jarvis, E. D., Johnson, W. E., Jones, S. J. M., Karlsson, E. K., Kersey, P. J., Kim, J. H., Kress, W. J., Kuraku, S., Lawniczak, M. K. N., Leebens-Mack, J. H., Li, X., Lindblad-Toh, K., Liu, X., Lopez, J. V., Marques-Bonet, T., Mazard, S., Mazet, J. A. K., Mazzoni, C. J., Myers, E. W., O’Neill, R. J., Paez, S., Park, H., Robinson, G. E., Roquet, C., Ryder, O. A., Sabir, J. S. M., Shaffer, H. B., Shank, T. M., Sherkow, J. S., Soltis, P. S., Tang, B., Tedersoo, L., Uliano-Silva, M., Wang, K., Wei, X., Wetzer, R., Wilson, J. L., Xu, X., Yang, H., Yoder, A. D. & KU, thw266, 2022, In: PNAS. 119, 4, 7 p., e2115635118.

      Research output: Contribution to journal › Review › Research › peer-review

    32. Published

      Earth BioGenome Project: sequencing life for the future of life

      Lewin, H. A., Robinson, G. E., Kress, W. J., Baker, W. J., Coddington, J., Crandall, K. A., Durbin, R., Edwards, S. V., Forest, F., Gilbert, M. T. P., Goldstein, M. M., Grigoriev, I. V., Hackett, K. J., Haussler, D., Jarvis, E. D., Johnson, W. E., Patrinos, A., Richards, S., Castilla-Rubio, J. C., van Sluys, M-A. & 4 others, Soltis, P. S., Xu, X., Yang, H. & KU, thw266, 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 17, p. 4325-4333 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    33. Published

      Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment

      Li, C., Zhang, Y., Li, J., Kong, L., Hu, H., Pan, H., Xu, L., Deng, Y., Li, Q., Jin, L., Yu, H., Chen, Y., Liu, B., Yang, L., Liu, S., Zhang, Y., Lang, Y., Xia, J., He, W., Shi, Q. & 21 others, Subramanian, S., Millar, C. D., Meader, S., Rands, C. M., Fujita, M. K., Greenwold, M. J., Castoe, T. A., Pollock, D. D., Gu, W., Nam, K., Ellegren, H., Ho, S. Y., Burt, D. W., Ponting, C. P., Jarvis, E. D., Gilbert, M Thomas P, Yang, H., Wang, J., Lambert, D. M., Wang, J. & KU, thw266, 2014, In: GigaScience. 3, 27, 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    34. Published

      Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species

      Li, S., Li, B., Cheng, C., Xiong, Z., Liu, Q., Lai, J., Carey, H. V., Zhang, Q., Zheng, H., Wei, S., Zhang, H., Chang, L., Liu, S., Zhang, S., Yu, B., Zeng, X., Hou, Y., Nie, W., Guo, Y., Chen, T. & 13 others, Han, J., Wang, J., Wang, J., Chen, C., Liu, J., Stambrook, P. J., Xu, M., KU, thw266, Gilbert, M Thomas P, Yang, H., Jarvis, E. D., Yu, J. & Yan, J., 2014, In: Genome Biology (Online Edition). 15, 16 p., 557.

      Research output: Contribution to journal › Journal article › Research › peer-review

    35. Published

      Applied Hologenomics: Feasibility and Potential in Aquaculture

      Limborg, Morten Tønsberg, Alberdi, Antton, Kodama, M., Roggenbuck, M., Kristiansen, Karsten & Gilbert, M Thomas P, 2018, In: Trends in Biotechnology. 36, 3, p. 252-264 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    36. Published

      Probing the genomic limits of de-extinction in the Christmas Island rat

      Lin, J., Duchene, David, Carøe, C., Smith, O., Ciucani, M. M., Niemann, Jonas, Richmond, D., Greenwood, A. D., MacPhee, R., KU, thw266, Gopalakrishnan, Shyam & Gilbert, M Thomas P, 2022, In: Current Biology. 32, 7, p. 1650-1656.e3

      Research output: Contribution to journal › Journal article › Research › peer-review

    37. Published

      Biological adaptations in the Arctic cervid, the reindeer (Rangifer tarandus)

      Lin, Z., Chen, L., Chen, X., Zhong, Y., Yang, Y., Xia, W., Liu, C., Zhu, W., Wang, H., Yan, B., Yang, Y., Liu, X., Kvie, K. S., Røed, K. H., Wang, K., Xiao, W., Wei, H., Li, G., Heller, R., Gilbert, M. T. P. & 3 others, Qiu, Q., Wang, W. & Li, Z., 2019, In: Science. 364, 6446, p. 1154-+ 7 p., eaav6312.

      Research output: Contribution to journal › Journal article › Research › peer-review

    38. Published

      Ancient DNA reveals traces of Iberian Neolithic and Bronze Age lineages in modern Iberian horses

      Lira, J., Linderholm, A., Olaria, C., Brandström Durling, M., Gilbert, M Thomas P, Ellegren, H., Willerslev, Eske, Lidén, K., Arsuaga, J. L. & Götherström, A., Jan 2010, In: Molecular Ecology. 19, 1, p. 64-78 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    39. Published

      A towering genome: Experimentally validated adaptations to high blood pressure and extreme stature in the giraffe

      Liu, C., Gao, J., Cui, X., Li, Z., Chen, L., Yuan, Y., Zhang, Y., Mei, L., Zhao, L., Cai, D., Hu, M., Zhou, B., Li, Z., Qin, T., Si, H., Li, G., Lin, Z., Xu, Y., Zhu, C., Yin, Y. & 9 others, Zhang, C., Xu, W., Li, Q., Wang, K., Gilbert, M Thomas P, Heller, Rasmus, Wang, W., Huang, J. & Qiu, Q., 2021, In: Science Advances. 7, 12, 13 p., eabe9459.

      Research output: Contribution to journal › Journal article › Research › peer-review

    40. Published

      Ancient and modern genomes unravel the evolutionary history of the rhinoceros family

      Liu, S., Westbury, M. V., Dussex, N., Mitchell, K. J., Sinding, M. H. S., Heintzman, P. D., Duchêne, D. A., Kapp, J. D., von Seth, J., Heiniger, H., Sánchez-Barreiro, F., Margaryan, A., André-Olsen, R., De Cahsan, B., Meng, G., Yang, C., Chen, L., van der Valk, T., Moodley, Y., Rookmaaker, K. & 19 others, Bruford, M. W., Ryder, O., Steiner, C., Sonsbeek, L. G. R. B., Vartanyan, S., Guo, C., Cooper, A., Kosintsev, P., Kirillova, I., Lister, A. M., Marques-Bonet, T., Gopalakrishnan, Shyam, Dunn, Rob, Lorenzen, Eline, Shapiro, B., KU, thw266, Antoine, P. O., Dalén, L. & Gilbert, M Thomas P, 2021, In: Cell. 184, 19, p. 4874-4885.e16

      Research output: Contribution to journal › Journal article › Research › peer-review

    41. Published

      Whole-Genome Sequencing of African Dogs Provides Insights into Adaptations against Tropical Parasites

      Liu, Y., Wang, L., Xu, T., Guo, X., Li, Y., Yin, T., Yang, H., Hu, Y., Adeola, A. C., Sanke, O. J., Otecko, N. O., Wang, M., Ma, Y., Charles, O. S., Sinding, M. S., Gopalakrishnan, S., Alfredo Samaniego, J., Hansen, A. J., Fernandes, C., Gaubert, P. & 10 others, Budd, J., Dawuda, P. M., Knispel Rueness, E., Jiang, L., Zhai, W., Gilbert, M Thomas P, Peng, M., Qi, X., Wang, G. & Zhang, Y., 1 Feb 2018, In: MOLECULAR BIOLOGY AND EVOLUTION . 35, 2, p. 287-298

      Research output: Contribution to journal › Letter › Research › peer-review

    42. Published

      Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia

      Loog, L., Thalmann, O., Sinding, M. H. S., Schuenemann, V. J., Perri, A., Germonpré, M., Bocherens, H., Witt, K. E., Samaniego Castruita, J. A., Velasco, M. S., Lundstrøm, I. K. C., Wales, N., Sonet, G., Frantz, L., Schroeder, H., Budd, J., Jimenez, E. L., Fedorov, S., Gasparyan, B., Kandel, A. W. & 16 others, Lázničková-Galetová, M., Napierala, H., Uerpmann, H. P., Nikolskiy, P. A., Pavlova, E. Y., Pitulko, V. V., Herzig, K., Malhi, R. S., Willerslev, Eske, Hansen, Anders Johannes, Dobney, K., Gilbert, M Thomas P, Krause, J., Larson, G., Eriksson, A. & Manica, A., 2020, In: Molecular Ecology. 29, 9, p. 1596-1610 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    43. Published

      Pre-extinction Demographic Stability and Genomic Signatures of Adaptation in the Woolly Rhinoceros

      Lord, E., Dussex, N., Kierczak, M., Díez-del-Molino, D., Ryder, O. A., Stanton, D. W. G., Gilbert, M. T. P., Sánchez-Barreiro, F., Zhang, G., Sinding, M. H. S., Lorenzen, E. D., Willerslev, E., Protopopov, A., Shidlovskiy, F., Fedorov, S., Bocherens, H., Nathan, S. K. S. S., Goossens, B., van der Plicht, J., Chan, Y. L. & 10 others, Prost, S., Potapova, O., Kirillova, I., Lister, A. M., Heintzman, P. D., Kapp, J. D., Shapiro, B., Vartanyan, S., Götherström, A. & Dalén, L., 2020, In: Current Biology. 30, 19, p. 3871-3879, e1-e7 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    44. Published

      Species-specific responses of Late Quaternary megafauna to climate and humans

      Lorenzen, E., Nogues, D. B., Orlando, L. A. A., Weinstock Arenovitz, J., Binladen, J. K. M. A., Marske, K. A., Ugan, A., Borregaard, M. K., Gilbert, M. T. P., Nielsen, R., Ho, S. Y. W., Goebel, T., Graf, K. E., Byers, D., Stenderup, J., Rasmussen, M., Campos, P., Leonard, J. A., Koepfli, K-P., Froese, D. & 35 others, Zazula, G., Stafford jr., T., Aaris-Sørensen, Kim, Batra, P., Haywood, A. M., Singarayer, J. S., Valdes, P. J., Boeskorov, G., Burns, J. A., Davydov, S. P., Haile, James Seymour, Jenkins, D. L., Kosintsev, P., Kuznetsova, T., Lai, X., Martin, L. D., McDonald, H. G., Mol, D., Meldgaard, Morten, Munch, K., Stephan, E., Sablin, M., Sommer, R. S., Sipko, T., Scott, E., Suchard, M. A., Tikhonov, A., Willerslev, R., Wayne, R. K., Cooper, A., Hofreiter, M., Sher, A., Shapiro, B., Rahbek, Carsten & Willerslev, Eske, 2011, In: Nature. 479, 7373, p. 359-364 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    45. Published

      Rhizosphere bacterial communities differ among traditional maize landraces

      Lund, M., Rasmussen, Jacob Agerbo, Ramos Madrigal, Jazmin, Sawers, R., Gilbert, M Thomas P & Barnes, Christopher James, 2022, In: Environmental DNA. 4, 6, p. 1241-1249 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    46. Published

      Beringian paleoecology inferred from permafrost-preserved fungal DNA

      Lydolph, M. C., Jacobsen, J., Arctander, P., Gilbert, M Thomas P, Gilichinsky, D. A., Hansen, Anders Johannes, Willerslev, Eske & Lange, L., 2005, In: Applied and Environmental Microbiology. 71, 2, p. 1012-7 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    47. Published

      The potential of aquatic bloodfeeding and nonbloodfeeding leeches as a tool for iDNA characterisation

      Lynggaard, Christina Islas, Oceguera-Figueroa, A., Kvist, S., Gilbert, M Thomas P & Bohmann, Kristine, 2022, In: Molecular Ecology Resources. 22, 2, p. 539-553 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    48. Published

      DNA-Based Arthropod Diversity Assessment in Amazonian Iron Mine Lands Show Ecological Succession Towards Undisturbed Reference Sites

      Lynggaard, Christina Islas, Yu, D. W., Oliveira, G., Caldeira, C. F., Ramos, S. J., Ellegaard, M. R., Gilbert, M Thomas P, Gastauer, M. & Bohmann, Kristine, 2020, In: Frontiers in Ecology and Evolution. 8, 15 p., 590976.

      Research output: Contribution to journal › Journal article › Research › peer-review

    49. Published

      Bone-associated gene evolution and the origin of flight in birds

      Machado, J. P., Johnson, W. E., Gilbert, M Thomas P, KU, thw266, Jarvis, E. D., O'Brien, S. J. & Antunes, A., 2016, In: BMC Genomics. 17, 15 p., 371.

      Research output: Contribution to journal › Journal article › Research › peer-review

    50. Published

      Progress for research of grape and wine culture in Georgia, the South Caucasus

      Maghradze, D., Aslanishvili, A., Mdinaradze, I., Tkemaladze, D., Mekhuzla, L., Lordkipanidze, D., Jalabadze, M., Kvavadze, E., Rusishvili, N., Mcgovern, P., This, P., Bacilieri, R., Failla, O., Cola, G., Mariani, L., Toffolatti, S. L., Lorenzis, G. D., Bianco, P. A., Quaglino, F., Wales, N. & 11 others, Gilbert, M Thomas P, Bouby, L., Kazeli, T., Ujmajuridze, L., Mamasakhlisashili, L., Batiuk, S., Graham, A., Boaretto, E., Cheishvili, A., Davitashvili, A. L. & Aurand, J. (ed.), 2019. 10 p.

      Research output: Contribution to conference › Paper › Research › peer-review

    51. Published

      Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

      Mak, Sarah Siu Tze, Gopalakrishnan, Shyam, Carøe, C., Geng, C., Liu, Shanlin, Sinding, Mikkel Holger Strander, Kuderna, L. F. K., Zhang, W., Fu, S., Vieira, Filipe Garrett, Germonpré, M., Bocherens, H., Fedorov, S., Petersen, Bent, Sicheritz-Pontén, T., Marques-Bonet, T., KU, thw266, Jiang, H. & Gilbert, M Thomas P, Aug 2017, In: GigaScience. 6, 8, p. 1–13 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    52. Published

      More on contamination: the use of asymmetric molecular behavior to identify authentic ancient human DNA.

      Malmström, H., Svensson, E. M., Gilbert, M Thomas P, Willerslev, Eske, Götherström, A. & Holmlund, G., 2007, In: Molecular Biology and Evolution. 24, 4, p. 998-1004 6 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    53. Published

      Ancient mitochondrial DNA from the northern fringe of the Neolithic farming expansion in Europe sheds light on the dispersion process

      Malmström, H., Linderholm, A., Skoglund, P., Storå, J., Sjödin, P., Gilbert, M Thomas P, Holmlund, G., Willerslev, Eske, Jakobsson, M., Lidén, K. & Götherström, A., 2015, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 370, 10 p., 20130373.

      Research output: Contribution to journal › Journal article › Research › peer-review

    54. Published

      Barking up the wrong tree: modern northern European dogs fail to explain their origin.

      Malmström, H., Vilà, C., Gilbert, M Thomas P, Storå, J., Willerslev, Eske, Holmlund, G. & Götherström, A., 2008, In: BMC Evolutionary Biology. 8, p. 71

      Research output: Contribution to journal › Journal article › Research › peer-review

    55. Published

      Ancient DNA reveals lack of continuity between neolithic hunter-gatherers and contemporary Scandinavians

      Malmström, H., Gilbert, M Thomas P, Thomas, M. G., Brandström, M., Storå, J., Molnar, P., Andersen, P. K., Bendixen, C., Holmlund, G., Götherström, A. & Willerslev, Eske, 2009, In: Current Biology. 19, 20, p. 1758-62 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    56. Published

      Finding the founder of Stockholm - A kinship study based on Y-chromosomal, autosomal and mitochondrial DNA

      Malmström, H., Vretemark, M., Tillmar, A., Durling, M. B., Skoglund, P., Gilbert, M Thomas P, Willerslev, Eske, Holmlund, G. & Götherström, A., Jan 2012, In: Annals of Anatomy. 194, 1, p. 138-145 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    57. Published

      Mitochondrial genomes of Danish vertebrate species generated for the national DNA reference database, DNAmark

      Margaryan, Ashot, Noer, Christina, Richter, S. R., Restrup, M. E., Bülow‐hansen, J. L., Leerhøi, Frederik, Arfaoui, Emilia Marie Rolander, Gopalakrishnan, Shyam, Carøe, C., Gilbert, M Thomas P & Bohmann, Kristine, 2021, In: Environmental DNA. 3, 2, p. 472-480

      Research output: Contribution to journal › Journal article › Research › peer-review

    58. Published

      Recent mitochondrial lineage extinction in the critically endangered Javan rhinoceros

      Margaryan, Ashot, Sinding, Mikkel Holger Strander, Liu, Shanlin, Vieira, Filipe Garrett, Chan, Y. L., Nathan, S. K. S. S., Moodley, Y., Bruford, M. W. & Gilbert, M Thomas P, 2020, In: Zoological Journal of the Linnean Society. 190, 1, p. 372-383 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    59. Published

      Population genomics of the Viking world: [incl. correction]

      Margaryan, A., Lawson, D. J., Sikora, M., Racimo, F., Rasmussen, S., Moltke, I., Cassidy, L. M., Jørsboe, E., Ingason, A., Pedersen, M. W., Korneliussen, T., Wilhelmson, H., Buś, M. M., de Barros Damgaard, P., Martiniano, R., Renaud, G., Bhérer, C., Moreno-Mayar, J. V., Fotakis, A. K., Allen, M. & 30 others, Allmäe, R., Molak, M., Cappellini, Enrico, Scorrano, Gabriele, McColl, Hugh, Buzhilova, A., Fox, A., Albrechtsen, Anders, Schütz, B., Skar, B., Arcini, C., Lundstrøm, I., Cheng, J., Stenderup, Jesper Tandberg, Iversen, K. H., Arge, S. V., Ellingvåg, S., Orlando, L., Pentz, P., Jessen, M. D., Pedersen, A., Jørkov, M L S, Lynnerup, Niels, Gilbert, M Thomas P, Allentoft, Morten Erik, Sindbæk, S. M., Kristiansen, K., Nielsen, Rasmus, Werge, Thomas & Willerslev, Eske, 2020, In: Nature. 585, 7825, p. 390-396 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    60. Published

      Persistence of the mitochondrial lineage responsible for the Irish potato famine in extant New World Phytophthora infestans

      Martin, M. D., Ho, S. Y. W., Wales, N., Ristaino, J. B. & Gilbert, M Thomas P, 2014, In: Molecular Biology and Evolution. 31, 6, p. 1414-1420 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    61. Published

      Reconstructing genome evolution in historic samples of the Irish potato famine pathogen

      Martin, M. D., Cappellini, Enrico, Samaniego Castruita, J. A., Zepeda Mendoza, M. L., Campos, P., Seguin-Orlando, A., Wales, N., Orlando, L. A. A., Ho, S. Y. W., Dietrich, F. S., Mieczkowski, P. A., Heitman, J., Willerslev, Eske, Krogh, Anders, Ristaino, J. B. & Gilbert, M Thomas P, 18 Jul 2013, In: Nature Communications. 4, 7 p., 2172.

      Research output: Contribution to journal › Journal article › Research › peer-review

    62. Published

      Genomic characterization of a South American Phytophthora hybrid mandates reassessment of the geographic origins of Phytophthora infestans

      Martin, M. D., Vieira, Filipe Garrett, Ho, S. Y. W., Wales, N., Schubert, Mikkel, Seguin-Orlando, A., Ristaino, J. B. & Gilbert, M Thomas P, 2016, In: Molecular Biology and Evolution. 33, 2, p. 478-491 14 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    63. Published

      Herbarium specimens reveal a historical shift in phylogeographic structure of common ragweed during native range disturbance

      Martin, M. D., Zimmer, E. A., Olsen, Morten Tange, Foote, A. D., Gilbert, M Thomas P & Brush, G. S., 2014, In: Molecular Ecology. 23, 7, p. 1701-1716 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    64. Published

      The population genomic basis of geographic differentiation in North American common ragweed (Ambrosia artemisiifolia L.)

      Martin, M. D., Olsen, Morten Tange, Samaniego Castruita, J. A., Zimmer, E. A. & Gilbert, M Thomas P, Jun 2016, In: Ecology and Evolution. 6, 11, p. 3760-3771 12 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    65. Published

      Rare mtDNA haplogroups and genetic differences in rich and poor Danish Iron-Age villages.

      Melchior, L., Gilbert, M Thomas P, Kivisild, T., Lynnerup, Niels & Dissing, J., 2008, In: American Journal of Physical Anthropology. 135, 2, p. 206-15 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    66. Published

      Evidence for a single loss of mineralized teeth in the common avian ancestor

      Meredith, R. W., KU, thw266, Gilbert, M Thomas P, Jarvis, E. D. & Springer, M. S., 2014, In: Science. 346, 6215, 6 p., 1254390.

      Research output: Contribution to journal › Journal article › Research › peer-review

    67. Published

      Application of full mitochondrial genome sequencing using 454 GS FLX pyrosequencing

      Mikkelsen, M., Rockenbauer, Eszter, Wächter, A., Fendt, L., Zimmermann, B., Parson, W., Nielsen, S. A., Gilbert, M Thomas P, Willerslev, Eske & Morling, Niels, 2009, Progress in Forensic Genetics 13: Proceedings of the 23rd International ISFG Congress. Morling, N. (ed.). Elsevier, Vol. 2. p. 518 - 519 2 p. (Forensic Science International: Genetics Supplement Series; No. 1, Vol. 2).

      Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

    68. Published

      The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus)

      Miller, W., Drautz, D. I., Janecka, J. E., Lesk, A. M., Ratan, A., Tomsho, L. P., Packard, M., Zhang, Y., McClellan, L. R., Qi, J., Zhao, F., Gilbert, M Thomas P, Dalén, L., Arsuaga, J. L., Ericson, P. G. P., Huson, D. H., Helgen, K. M., Murphy, W. J., Götherström, A. & Schuster, S. C., 2009, In: Genome Research. 19, 2, p. 213-20 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    69. Published

      An expanded mammal mitogenome dataset from Southeast Asia

      Mohd Salleh, F. B., Ramos Madrigal, Jazmin, Peñaloza, F., Liu, Shanlin, Sinding, Mikkel Holger Strander, Patel, R. P., Martins, R., Lenz, D., Fickel, J., Roos, C., Shamsir, M. S., Azman, M. S., Lim, B. K., Rossiter, S. J., Wilting, A. & Gilbert, M Thomas P, Aug 2017, In: GigaScience. 6, 8, p. 1–8 8 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    70. Published

      Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species

      Morin, P. A., Archer, F. I., Foote, A. D., Mouatt, J. T. V., Allen, E. E., Wade, P., Durban, J., Parsons, K., Pitman, R., Li, L., Bouffard, P., Nielsen, S. C. A., Rasmussen, M., Willerslev, Eske, Gilbert, M Thomas P & Harkins, T., 1 Jul 2010, In: Genome Research. 20, 7, p. 908-916 9 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    71. Published

      Geographic and temporal dynamics of a global radiation and diversification in the killer whale

      Morin, P. A., Parsons, K. M., Archer, F. I., Avila Arcos, M. D. C., Barrett-Lennard, L. G., Dalla Rosa, L., Duchêne, S., Durban, J. W., Ellis, G. M., Ferguson, S. H., Ford, J. K., Ford, M. J., Garilao, C., Gilbert, M. T. P., Kaschner, K., Matkin, C. O., Petersen, S. D., Robertson, K. M., Visser, I. N., Wade, P. R. & 2 others, Ho, S. Y. W. & Foote, A. D., 2015, In: Molecular Ecology. 24, 15, p. 3964-3979 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    72. Published

      Mitogenomic phylogenetic analyses of the Delphinidae with an emphasis on the Globicephalinae

      Mouatt, J. T. V., Ho, S. Y. W., Foote, A. D., Morin, P. A., Kreb, D., Krützen, M., Parra, G. J., Robertson, K. M., de Stephanis, R., Verborgh, P., Willerslev, Eske, Orlando, L. A. A. & Gilbert, M Thomas P, 1 Jan 2011, In: BMC Evolutionary Biology. 11, 10 p., 65.

      Research output: Contribution to journal › Journal article › Research › peer-review

    73. Published

      Recent diversification of a marine genus (Tursiops spp.) Tracks habitat preference and environmental change

      Moura, A. E., Nielsen, S. C. A., Mouatt, J. T. V., Moreno Mayar, J. Víctor, Gilbert, M Thomas P, Gray, H. W. I., Natoli, A., Möller, L. & Hoelzel, A. R., Nov 2013, In: Systematic Biology. 62, 6, p. 865-77 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    74. Published

      Statistical guidelines for detecting past population shifts using ancient DNA

      Mourier, T., Ho, S. Y. W., Gilbert, M Thomas P, Willerslev, Eske & Orlando, L. A. A., 16 Mar 2012, In: Molecular Biology and Evolution. 29, 9, p. 2241-2251 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    75. Published

      High-throughput sequencing of ancient plant and mammal DNA preserved in herbivore middens

      Murray, D. C., Pearson, S. G., Fullagar, R., Chase, B. M., Houston, J., Atchison, J., White, N. E., Bellgard, M. I., Clarke, E., Macphail, M., Gilbert, M Thomas P, Haile, James Seymour & Bunce, M., 14 Dec 2012, In: Quaternary Science Reviews. 58, p. 135-145 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    76. Published

      Natural selection shaped the rise and fall of passenger pigeon genomic diversity

      Murray, G. G. R., Soares, A. E. R., Novak, B. J., Schaefer, N. K., Cahill, J. A., Baker, A. J., Demboski, J. R., Doll, A., Rodrigues da Fonseca, R. A., Fulton, T. L., Gilbert, T., Heintzman, P. D., Letts, B., McIntosh, G., O'Connell, B. L., Peck, M., Pipes, M-L., Rice, E. S., Santos, K. M., Sohrweide, A. G. & 4 others, Vohr, S. H., Corbett-Detig, R. B., Green, R. E. & Shapiro, B., 17 Nov 2017, In: Science. 358, 6365, p. 951-954 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    77. Published

      Extreme freeze-tolerance in cryophilic tardigrades relies on controlled ice formation but does not involve significant change in transcription: [Corrigendum]

      Møbjerg, A., Kodama, M., Ramos Madrigal, Jazmin, Neves, R. C., Jørgensen, Aslak, Schiøtt, M., Gilbert, M Thomas P & Møbjerg, Nadja, 2022, In: Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology. 271, 8 p., 111245.

      Research output: Contribution to journal › Journal article › Research › peer-review

    78. Published

      Near-Random Distribution of Chromosome-Derived Circular DNA in the Condensed Genome of Pigeons and the Larger, More Repeat-Rich Human Genome

      Møller, H. D., Ramos Madrigal, Jazmin, Prada Luengo, Inigo, Gilbert, M Thomas P & Regenberg, Birgitte, 2020, In: Genome Biology and Evolution. 12, 2, p. 3762-3777 16 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    79. Published

      Differential expression profiling of heat stressed tardigrades reveals major shift in the transcriptome

      Neves, R. C., Møbjerg, A., Kodama, M., Ramos Madrigal, Jazmin, Gilbert, M Thomas P & Møbjerg, Nadja, 2022, In: Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology. 267, 7 p., 111169.

      Research output: Contribution to journal › Journal article › Research › peer-review

    80. Published

      The pangenome of the fungal pathogen Neonectria neomacrospora

      Nielsen, Knud Nor, Sirén, K., Petersen, Bent, Sicheritz-Pontén, Thomas, Gilbert, M Thomas P, Korneliussen, Thorfinn Sand & Hansen, Ole Kim, 12 Mar 2021, 30 p. (bioRxiv).

      Research output: Working paper › Preprint › Research

    81. Published

      A simplified DNA extraction protocol for unsorted bulk arthropod samples that maintains exoskeletal integrity

      Nielsen, M., Gilbert, M Thomas P, Pape, Thomas & Bohmann, Kristine, 2019, In: Environmental DNA. 1, 2, p. 144-154

      Research output: Contribution to journal › Journal article › Research › peer-review

    82. Published

      Near-complete genome sequencing of swine vesicular disease virus using the Roche GS FLX sequencing platform

      Nielsen, S. C. A., Bruhn, C. A. W., Samaniego Castruita, J. A., Wadsworth, J., Knowles, N. J. & Gilbert, M Thomas P, 2014, In: PLOS ONE. 9, 5, 7 p., e97180.

      Research output: Contribution to journal › Journal article › Research › peer-review

    83. Published

      Probable transmission of coxsackie B3 virus from human to chimpanzee, Denmark

      Nielsen, S. C. A., Mourier, T., Baandrup, U., Søland, Tine Mangart, Bertelsen, Mads Frost, Gilbert, M Thomas P & Nielsen, L. P., 2012, In: Emerging Infectious Diseases . 18, 7, p. 1163-1165 3 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    84. Published

      Extended survival of Pleistocene Siberian wolves into the early 20th century on the island of Honshu

      Niemann, Jonas, Gopalakrishnan, Shyam, Yamaguchi, N., Ramos Madrigal, Jazmin, Wales, N., Gilbert, M Thomas P & Sinding, M. S., 2021, In: iScience. 24, 25 p., 101904.

      Research output: Contribution to journal › Journal article › Research › peer-review

    85. Published

      Historical isolation facilitates species radiation by sexual selection: Insights from Chorthippus grasshoppers

      Nolen, Z. J., Yildirim, B., Irisarri, I., Liu, Shanlin, Groot Crego, C., Amby, Daniel Buchvaldt, Mayer, F., Gilbert, M Thomas P & Pereira, R. J., 2020, In: Molecular Ecology. 29, 24, p. 4985-5002

      Research output: Contribution to journal › Journal article › Research › peer-review

    86. Published

      The discovery of Neotropical Lepidosira (Collembola, Entomobryidae) and its systematic position

      Nunes, R. C., Godeiro, N. N., Antunes Pacheco, George, Liu, Shanlin, Gilbert, M Thomas P, Alvarez-Valin, F., Zhang, F. & Bellini, B. C., 2019, In: Zoologica Scripta. 48, 6, p. 783-800

      Research output: Contribution to journal › Journal article › Research › peer-review

    87. Published

      Holo-Omics: Integrated Host-Microbiota Multi-omics for Basic and Applied Biological Research

      Jessen, Lasse Nyholm, Koziol, Adam Leslie, Marcos, S., Botnen, A. B., Aizpurua Arrieta, Ostaizka, Gopalakrishnan, Shyam, Limborg, Morten Tønsberg, Gilbert, M Thomas P & Alberdi, Antton, 2020, In: iScience. 23, 8, p. 1-16 101414.

      Research output: Contribution to journal › Review › Research › peer-review

    88. Published

      Postglacial Colonization of Northern Coastal Habitat by Bottlenose Dolphins: a Marine Leading-Edge Expansion?

      Nykänen, M., Kaschner, K., Dabin, W., Brownlow, A., Davison, N. J., Deaville, R., Garilao, C., Kesner-Reyes, K., Gilbert, M Thomas P, Penrose, R., Islas-Villanueva, V., Wales, N., Ingram, S. N., Rogan, E., Louis, Marie Georgette Yolande J & Foote, A. D., 2019, In: The Journal of Heredity. 110, 6, p. 662-674

      Research output: Contribution to journal › Journal article › Research › peer-review

    89. Published

      A common genetic origin for early farmers from Mediterranean Cardial and Central European LBK cultures

      Olalde, I., Schroeder, Hannes, Sandoval-Velasco, Marcela, Vinner, Lasse, Lobón, I., Ramirez, O., Civit, S., Borja, P. G., Salazar-García, D. C., Talamo, S., Fullola, J. M., Oms, F. X., Pedro, M., Martínez, P., Sanz, M., Daura, J., Zilhão, J., Marquès-Bonet, T., Gilbert, M Thomas P & Lalueza-Fox, C., 2015, In: Molecular Biology and Evolution. 32, 12, p. 3132-3142 11 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    90. Published

      Identification of African swine fever virus transcription within peripheral blood mononuclear cells of acutely infected pigs

      Olesen, A. S., Kodama, M., Lohse, L., Accensi, F., Rasmussen, T. B., Lazov, Christina Marie, Limborg, Morten Tønsberg, Gilbert, M Thomas P, Bøtner, A. & Belsham, Graham John, 2021, In: Viruses. 13, 11, 2333.

      Research output: Contribution to journal › Journal article › Research › peer-review

    91. Published

      DNA from keratinous tissue. Part II: feather

      Olsen, M. E., Bengtsson, C. F., Bertelsen, Mads Frost, Willerslev, Eske & Gilbert, M Thomas P, 2012, In: Annals of Anatomy. 194, 1, p. 31-35 5 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    92. Published

      True single-molecule DNA sequencing of a pleistocene horse bone

      Orlando, L. A. A., Ginolhac, A., Raghavan, M., Mouatt, J. T. V., Rasmussen, M., Magnussen, K., Steinmann, K. E., Kapranov, P., Thompson, J. F., Zazula, G., Froese, D., Moltke, Ida, Shapiro, B., Hofreiter, M., Al-Rasheid, K. A. S., Gilbert, M Thomas P & Willerslev, Eske, 2011, In: Genome Research. 21, 10, p. 1705-1719 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    93. Published

      Reconstructing ancient genomes and epigenomes

      Orlando, L. A. A., Gilbert, M Thomas P & Willerslev, Eske, 2015, In: Nature Reviews. Genetics. 16, 7, p. 395-408 14 p.

      Research output: Contribution to journal › Review › Research › peer-review

    94. Published

      Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

      Orlando, L. A. A., Ginolhac, A., Zhang, G., Froese, D., Albrechtsen, A., Stiller, M., Schubert, M., Cappellini, E., Petersen, B., Moltke, I., Johnson, P. L. F., Fumagalli, M., Mouatt, J. T. V., Raghavan, M., Korneliussen, T. S., Malaspinas, A. S., Vogt, J., Szklarczyk, D. M., Kelstrup, C., Vinther, J. & 36 others, Dolocan, A., Stenderup, Jesper Tandberg, Velazquez, A. M. V., Cahill, J., Rasmussen, M., Wang, X., Min, J., Zazula, G. D., Seguin-Orlando, A., Mortensen, C., Magnussen, K., Thompson, J. F., Weinstock, J., Gregersen, K., Røed, K. H., Eisenmann, V., Rubin, C. J., Miller, D. C., Antczak, D. F., Bertelsen, M. F., Brunak, S., Al-Rasheid, K. A. S., Ryder, O., Andersson, L., Mundy, J., Krogh, Anders, Gilbert, M Thomas P, Kjær, Kurt H., Sicheritz-Pontén, T., Jensen, Lars Juhl, Olsen, Jesper Velgaard, Hofreiter, M., Nielsen, R., Shapiro, B., Wang, J. & Willerslev, Eske, 4 Jul 2013, In: Nature. 499, 7456, p. 74-78 5 p.

      Research output: Contribution to journal › Letter › Research › peer-review

    95. Published

      Fossil avian eggshell preserves ancient DNA

      Oskam, C. L., Haile, James Seymour, McLay, E., Rigby, P., Allentoft, Morten Erik, Olsen, M. E., Bengtsson, C., Miller, G. H., Schwenninger, J., Jacomb, C., Walter, R., Baynes, A., Dortch, J., Parker-Pearson, M., Gilbert, M Thomas P, Holdaway, R. N., Willerslev, Eske & Bunce, M., 7 Jul 2010, In: Royal Society of London. Proceedings B. Biological Sciences. 277, 1690, p. 1991-2000 10 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    96. Published

      Darwin's Fancy Revised: An Updated Understanding of the Genomic Constitution of Pigeon Breeds

      Antunes Pacheco, George, van Grouw, H., Shapiro, M. D., Gilbert, M Thomas P & Vieira, Filipe Garrett, 2020, In: Genome Biology and Evolution. 12, 3, p. 136-150 15 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    97. Published

      Mitogenomic analyses from ancient DNA

      Paijmans, J. L. A., Gilbert, M Thomas P & Hofreiter, M., Nov 2013, In: Molecular Phylogenetics and Evolution. 69, 2, p. 404-416 13 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    98. Published

      Evolutionary history of Saber-toothed cats based on ancient mitogenomics

      Paijmans, J. L. A., Barnett, R., Gilbert, M Thomas P, Zepeda Mendoza, M. L., Reumer, J. W. F., de Vos, J., Zazula, G., Nagel, D., Baryshnikov, G. F., Leonard, J. A., Rohland, N., Westbury, Michael Vincent, Barlow, A. & Hofreiter, M., 6 Nov 2017, In: Current Biology. 27, 21, p. 3330-3336 7 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

    99. Published

      High-coverage genomes to elucidate the evolution of penguins

      Pan, H., Cole, T. L., Bi, X., Fang, M., Zhou, C., Yang, Z., Ksepka, D. T., Hart, T., Bouzat, J. L., Argilla, L. S., Bertelsen, M. F., Boersma, P. D., Bost, C. A., Cherel, Y., Dann, P., Fiddaman, S. R., Howard, P., Labuschagne, K., Mattern, T., Miller, G. & 26 others, Parker, P., Phillips, R. A., Quillfeldt, P., Ryan, P. G., Taylor, H., Thompson, D. R., Young, M. J., Ellegaard, M. R., Gilbert, M Thomas P, Sinding, Mikkel Holger Strander, Antunes Pacheco, George, Shepherd, L. D., Tennyson, A. J. D., Grosser, S., Kay, E., Nupen, L. J., Ellenberg, U., Houston, D. M., Reeve, A. H., Johnson, K., Masello, J. F., Stracke, T., McKinlay, B., Borboroglu, P. G., Zhang, D. X. & KU, thw266, 2019, In: GigaScience. 8, 9, p. 1-17

      Research output: Contribution to journal › Journal article › Research › peer-review

    100. Published

      Glacial survival of boreal trees in northern Scandinavia

      Parducci, L., Jørgensen, T., Tollefsrud, M. M., Elverland, E., Alm, T., Fontana, S. L., Bennett, K. D., Haile, J. S., Matetovici, I., Suyama, Y., Edwards, M. E., Andersen, K., Rasmussen, M., Boessenkool, S., Coissac, E., Brochmann, C., Taberlet, P., Houmark-Nielsen, M., Larsen, N. K., Orlando, L. A. A. & 4 others, Gilbert, M Thomas P, Kjær, Kurt H., Alsos, I. G. & Willerslev, Eske, 2 Mar 2012, In: Science. 335, 6072, p. 1083-1086 4 p.

      Research output: Contribution to journal › Journal article › Research › peer-review

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